| 1. |
- Bouckaert, R., et al.
(författare)
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
- 2019
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Ingår i: Plos Computational Biology. - : Public Library of Science (PLoS). - 1553-7358. ; 15:4
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Tidskriftsartikel (refereegranskat)abstract
- Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent years with major new advances in nearly all aspects of the joint modelling of evolutionary data. It is increasingly appreciated that some evolutionary questions can only be adequately answered by combining evidence from multiple independent sources of data, including genome sequences, sampling dates, phenotypic data, radiocarbon dates, fossil occurrences, and biogeographic range information among others. Including all relevant data into a single joint model is very challenging both conceptually and computationally. Advanced computational software packages that allow robust development of compatible (sub-)models which can be composed into a full model hierarchy have played a key role in these developments. Developing such software frameworks is increasingly a major scientific activity in its own right, and comes with specific challenges, from practical software design, development and engineering challenges to statistical and conceptual modelling challenges. BEAST 2 is one such computational software platform, and was first announced over 4 years ago. Here we describe a series of major new developments in the BEAST 2 core platform and model hierarchy that have occurred since the first release of the software, culminating in the recent 2.5 release. Author summary Bayesian phylogenetic inference methods have undergone considerable development in recent years, and joint modelling of rich evolutionary data, including genomes, phenotypes and fossil occurrences is increasingly common. Advanced computational software packages that allow robust development of compatible (sub-)models which can be composed into a full model hierarchy have played a key role in these developments. Developing scientific software is increasingly crucial to advancement in many fields of biology. The challenges range from practical software development and engineering, distributed team coordination, conceptual development and statistical modelling, to validation and testing. BEAST 2 is one such computational software platform for phylogenetics, population genetics and phylodynamics, and was first announced over 4 years ago. Here we describe the full range of new tools and models available on the BEAST 2.5 platform, which expand joint evolutionary inference in many new directions, especially for joint inference over multiple data types, non-tree models and complex phylodynamics.
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| 2. |
- Bourgoin, M., et al.
(författare)
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Investigation of the small-scale statistics of turbulence in the Modane S1MA wind tunnel
- 2018
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Ingår i: CEAS Aeronautical Journal. - : Springer. - 1869-5582 .- 1869-5590. ; 9:2, s. 269-281
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Tidskriftsartikel (refereegranskat)abstract
- This article describes the planning, set-up, turbulence characterization and analysis of measurements of a passive grid turbulence experiment that was carried out in the S1MA wind-tunnel from ONERA in Modane, in the context of the ESWIRP European project. This experiment aims at a detailed investigation of the statistical properties of turbulent flows at large Reynolds numbers. The primary goal is to take advantage of the unequaled large-scale dimensions of the ONERA S1MA wind-tunnel facility, to make available to the broad turbulence community high-quality experimental turbulence data with unprecendented resolution (both spatial and temporal) and accuracy (in terms of statistical convergence). With this goal, we designed the largest grid-generated turbulence experiment planned and performed to date. Grid turbulence is a canonical flow known to produce almost perfectly homogeneous and isotropic turbulence (HIT) which remains a unique framework to investigate fundamental physics of turbulent flows. Here, we present a brief description of the measurements, in particular those based on hot-wire diagnosis. By comparing results from classical hot-wires and from a nano-fabricated wire (developed at Princeton University), we show that our goal of resolving down to the smallest dissipative scales of the flow has been achieved. We also present the full characterization of the turbulence here, in terms of turbulent energy dissipation rate, injection and dissipation scales (both spatial and temporal) and Reynolds number.
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| 3. |
- Coudert, S., et al.
(författare)
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Double large field stereoscopic PIV in a high Reynolds number turbulent boundary layer
- 2011
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Ingår i: Experiments in Fluids. - : Springer Science and Business Media LLC. - 1432-1114 .- 0723-4864. ; 50:1, s. 1-12
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Tidskriftsartikel (refereegranskat)abstract
- An experiment on a flat plate turbulent boundary layer at high Reynolds number has been carried out in the Laboratoire de Mecanique de Lille (LML, UMR CNRS 8107) wind tunnel. This experiment was performed jointly with LEA (UMR CNRS 6609) in Poitiers (France) and Chalmers University of Technology (Sweden), in the frame of the WALLTURB European project. The simultaneous recording of 143 hot wires in one transverse plane and of two perpendicular stereoscopic PIV fields was performed successfully. The first SPIV plane is 1 cm upstream of the hot wire rake and the second is both orthogonal to the first one and to the wall. The first PIV results show a blockage effect which based on both statistical results (i.e. mean, RMS and spatial correlation) and a potential model does not seem to affect the turbulence organization.
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| 4. |
- Delville, J., et al.
(författare)
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The WALLTURB joined experiment to assess the large scale structures in a high reynolds number turbulent boundary layer
- 2011
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Ingår i: ERCOFTAC Series. - Dordrecht : Springer Netherlands. - 1382-4309 .- 2215-1826. - 9789048196029 ; 14, s. 64-73
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Konferensbidrag (refereegranskat)abstract
- Experiments, involving the joint effort of three European teams and aiming at using the state-of-the-art techniques to study the dynamics of the high Reynolds turbulent boundary layer, have been performed in June 2006 in the LML large wind tunnel. A set of four stereoscopic PIV systems and a rake of 143 hot wires were used to provide synchronised measurements. This paper summarises these ex-periments, presents sample results of both PIV and hot-wire rake data and illustrates the complementarity of such a coupled approach that combines the advantages of each technique.
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