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Sökning: WFRF:(Gelpi Josep)

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1.
  • Altenhoff, Adrian M., et al. (författare)
  • The Quest for Orthologs benchmark service and consensus calls in 2020
  • 2020
  • Ingår i: Nucleic Acids Research. - : Oxford University Press (OUP). - 0305-1048 .- 1362-4962. ; 48:W1, s. W538-W545
  • Tidskriftsartikel (refereegranskat)abstract
    • The identification of orthologs-genes in different species which descended from the same gene in their last common ancestor-is a prerequisite for many analyses in comparative genomics and molecular evolution. Numerous algorithms and resources have been conceived to address this problem, but benchmarking and interpreting them is fraught with difficulties (need to compare them on a common input dataset, absence of ground truth, computational cost of calling orthologs). To address this, the Quest for Orthologs consortium maintains a reference set of proteomes and provides a web server for continuous orthology benchmarking (http://orthology.benchmarkservice.org). Furthermore, consensus ortholog calls derived from public benchmark submissions are provided on the Alliance of Genome Resources website, the joint portal of NIH-funded model organism databases.
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2.
  • Ison, Jon, et al. (författare)
  • The bio.tools registry of software tools and data resources for the life sciences
  • 2019
  • Ingår i: Genome Biology. - : BMC. - 1465-6906 .- 1474-760X. ; 20:1
  • Tidskriftsartikel (refereegranskat)abstract
    • Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue () of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.
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