| 1. |
- Kehoe, Laura, et al.
(författare)
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Make EU trade with Brazil sustainable
- 2019
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 364:6438, s. 341-
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 2. |
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| 3. |
- Aguado, D. S., et al.
(författare)
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The Fifteenth Data Release of the Sloan Digital Sky Surveys : First Release of MaNGA-derived Quantities, Data Visualization Tools, and Stellar Library
- 2019
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Ingår i: Astrophysical Journal Supplement Series. - : Institute of Physics Publishing (IOPP). - 0067-0049 .- 1538-4365. ; 240:2
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Tidskriftsartikel (refereegranskat)abstract
- Twenty years have passed since first light for the Sloan Digital Sky Survey (SDSS). Here, we release data taken by the fourth phase of SDSS (SDSS-IV) across its first three years of operation (2014 July-2017 July). This is the third data release for SDSS-IV, and the 15th from SDSS (Data Release Fifteen; DR15). New data come from MaNGA-we release 4824 data cubes, as well as the first stellar spectra in the MaNGA Stellar Library (MaStar), the first set of survey-supported analysis products (e.g., stellar and gas kinematics, emission-line and other maps) from the MaNGA Data Analysis Pipeline, and a new data visualization and access tool we call "Marvin." The next data release, DR16, will include new data from both APOGEE-2 and eBOSS; those surveys release no new data here, but we document updates and corrections to their data processing pipelines. The release is cumulative; it also includes the most recent reductions and calibrations of all data taken by SDSS since first light. In this paper, we describe the location and format of the data and tools and cite technical references describing how it was obtained and processed. The SDSS website (www.sdss.org) has also been updated, providing links to data downloads, tutorials, and examples of data use. Although SDSS-IV will continue to collect astronomical data until 2020, and will be followed by SDSS-V (2020-2025), we end this paper by describing plans to ensure the sustainability of the SDSS data archive for many years beyond the collection of data.
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| 4. |
- Abolfathi, Bela, et al.
(författare)
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The Fourteenth Data Release of the Sloan Digital Sky Survey : First Spectroscopic Data from the Extended Baryon Oscillation Spectroscopic Survey and from the Second Phase of the Apache Point Observatory Galactic Evolution Experiment
- 2018
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Ingår i: Astrophysical Journal Supplement Series. - : IOP Publishing Ltd. - 0067-0049 .- 1538-4365. ; 235:2
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Tidskriftsartikel (refereegranskat)abstract
- The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) has been in operation since 2014 July. This paper describes the second data release from this phase, and the 14th from SDSS overall (making this Data Release Fourteen or DR14). This release makes the data taken by SDSS-IV in its first two years of operation (2014-2016 July) public. Like all previous SDSS releases, DR14 is cumulative, including the most recent reductions and calibrations of all data taken by SDSS since the first phase began operations in 2000. New in DR14 is the first public release of data from the extended Baryon Oscillation Spectroscopic Survey; the first data from the second phase of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE-2), including stellar parameter estimates from an innovative data-driven machine-learning algorithm known as "The Cannon"; and almost twice as many data cubes from the Mapping Nearby Galaxies at APO (MaNGA) survey as were in the previous release (N = 2812 in total). This paper describes the location and format of the publicly available data from the SDSS-IV surveys. We provide references to the important technical papers describing how these data have been taken (both targeting and observation details) and processed for scientific use. The SDSS web site (www.sdss.org) has been updated for this release and provides links to data downloads, as well as tutorials and examples of data use. SDSS-IV is planning to continue to collect astronomical data until 2020 and will be followed by SDSS-V.
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| 5. |
- Alberto, Helena, V, et al.
(författare)
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Characterization of the Interfacial Defect Layer in Chalcopyrite Solar Cells by Depth-Resolved Muon Spin Spectroscopy
- 2022
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Ingår i: Advanced Materials Interfaces. - : John Wiley & Sons. - 2196-7350. ; 9:19
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Tidskriftsartikel (refereegranskat)abstract
- As devices become smaller and more complex, the interfaces between adjacent materials become increasingly important and are often critical to device performance. An important research goal is to improve the interface between the absorber and the window layer by inserting buffer layers to adjust the transition. Depth-resolved studies are key for a fundamental understanding of the interface. In the present experiment, the interface between the chalcopyrite Cu(In,Ga)Se-2 absorber and various buffer layers are investigated using low-energy muon spin rotation (mu SR) spectroscopy. Depth resolution in the nm range is achieved by implanting the muons with different energies so that they stop at different depths in the sample. Near the interface, a region about 50 nm wide is detected where the lattice is more distorted than further inside the absorber. The distortion is attributed to the long-range strain field caused by defects. These measurements allow a quantification of the corresponding passivation effect of the buffer layer. Bath-deposited cadmium sulfide provides the best defect passivation in the near interface region, in contrast to the dry-deposited oxides, which have a much smaller effect. The experiment demonstrates the great potential of low energy mu SR spectroscopy for microscopic interfacial studies of multilayer systems.
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| 6. |
- Alonso-Rosa, Manuel, et al.
(författare)
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An IoT based mobile augmented reality application for energy visualization in buildings environments
- 2020
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Ingår i: Applied Sciences. - : MDPI. - 2076-3417. ; 10:2
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Tidskriftsartikel (refereegranskat)abstract
- Augmented reality (AR) improves how we acquire, understand, and display information without distracting us from the real world. These technologies can be used in different applications and industries as they can incorporate domain-specific visualizations on a real-world screen. Mobile augmented reality (MAR) essentially consists of superimposing virtual elements over real objects on the screen, to give added value and enrich the interaction with reality. In numerous plants, it is being used for maintenance and repair tasks, as well as training. The Internet of Things (IoT) is increasingly pervading every aspect of our lives, including the power infrastructure of our buildings. IoT-enabled devices offer many connectivity options for helping supervise all-important energy assets. Aggregating data to cloud-based platforms enables operations teams to have on-time information access to make fast decisions and have a fast response regarding energy use, while maintenance teams keep on top of the appliance power quality and reliability needed by using MAR. This paper presents a novel approximation for visualizing appliance-related power quality to enhance awareness about the consumed electricity. A combined solution of MAR with IoT technologies is employed. Engineered solutions’ hands-free way to get data about surrounding appliances reduces the complexity, saves energy, and speeds up the operations. An innovative way to measure things at the right time leads to a competitive advantage.
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| 7. |
- Barquero-Perez, Oscar, et al.
(författare)
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On the influence of heart rate and coupling interval prematurity on heart rate turbulence
- 2017
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Ingår i: IEEE Transactions on Biomedical Engineering. - 1558-2531. ; 64:2, s. 302-309
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Tidskriftsartikel (refereegranskat)abstract
- Objective: Heart rate turbulence (HRT) has been successfully explored for cardiac risk stratification. While HRT is known to be influenced by the heart rate (HR) and the coupling interval (CI), nonconcordant results have been reported on how the CI influences HRT. The purpose of this study is to investigate HRT changes in terms of CI and HR by means of an especially designed protocol. Methods: A dataset was acquired from 11 patients with structurally normal hearts for which CI was altered by different pacing trains and HR by isoproterenol during electrophysiological study (EPS). The protocol was designed so that, first, the effect of HR changes on HRT and, second, the combined effect of HR and CI could be explored. As a complement to the EPS dataset, a database of 24-h Holters from 61 acute myocardial infarction (AMI) patients was studied for the purpose of assessing risk. Data analysis was performed by using different nonlinear ridge regression models, and the relevance of model variables was assessed using resampling methods. The EPS subjects, with and without isoproterenol, were analyzed separately. Results: The proposed nonlinear regression models were found to account for the influence of HR and CI on HRT, both in patients undergoing EPS without isoproterenol and in low-risk AMI patients, whereas this influence was absent in high-risk AMI patients. Moreover, model coefficients related to CI were not statistically significant, p > 0.05, on EPS subjects with isoproterenol. Conclusion: The observed relationship between CI and HRT, being in agreement with the baroreflex hypothesis, was statistically significant (p < 0.05), when decoupling the effect of HR and normalizing the CI by the HR. Significance: The results of this study can help to provide new risk indicators that take into account physiological influence on HRT, as well as to model how this influence changes in different cardiac conditions.
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| 8. |
- Becerro-Rey, Laura, et al.
(författare)
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Aging of stallion spermatozoa stored in vitro is delayed at 22C using a 67 mm glucose-10 mm pyruvate-based media
- 2023
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Ingår i: Andrology. - : WILEY. - 2047-2919 .- 2047-2927.
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Tidskriftsartikel (refereegranskat)abstract
- Background: Most commerce of equine seminal doses is carried out using commercial extenders under refrigeration at 5 degrees C.Objectives: To determine if 10 mM pyruvate in a 67 mM glucose extender and storage at 22 degrees C could be the basis of an alternative storage method to cooling to 5 degrees C.Material and methods: Stallion ejaculates were extendedin: INRA96 (67 mM glucose, non-pyruvate control), modified Tyrodes (67 mM glucose-10 mM pyruvate), supplemented with 0, 10, 50, and 100 mu M itaconate. As itaconate was vehiculated in DMSO, a control vehicle was also included. Sperm motility, viability, mitochondrial membrane potential, and production of reactive oxygen species were measured after collection and again after 48 and 96 h of storage at 22 degrees C. To disclose molecular metabolic changes, spermatozoa were incubated up to 3 h in modified Tyrodes 67 mM glucose-10 mM pyruvate and modified Tyrodes 67 mM glucose, and metabolic analysis conducted.Results: After 96 h of storage aliquots stored in the control, INRA96 had a very poor total motility of 5.6% +/- 2.3%, while in the 67 mM glucose-10 mM pyruvate/10 mu M itaconate extender, total motility was 34.7% +/- 3.8% (p = 0.0066). After 96 h, viability was better in most pyruvate-based media, and the mitochondrial membrane potential in spermatozoa extended in INRA96 was relatively lower (p < 0.0001). Metabolomics revealed that in the spermatozoa incubated in the high pyruvate media, there was an increase in the relative amounts of NAD(+), pyruvate, lactate, and ATP.Discussion and conclusions: Aliquots stored in a 67 mM glucose-10 mM pyruvatebased medium supplemented with 10 mu M itaconate, maintained a 35% total motility after 96 h of storage at 22 degrees C, which is considered the minimum acceptable motility for commercialization. Improvements may be related to the conversion of pyruvate to lactate and regeneration of NAD(+).
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| 9. |
- Blösch, Günter, et al.
(författare)
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Twenty-three unsolved problems in hydrology (UPH) - a community perspective
- 2019
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Ingår i: Hydrological Sciences Journal. - : Informa UK Limited. - 0262-6667 .- 2150-3435. ; 64:10, s. 1141-1158
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Tidskriftsartikel (refereegranskat)abstract
- This paper is the outcome of a community initiative to identify major unsolved scientific problems in hydrology motivated by a need for stronger harmonisation of research efforts. The procedure involved a public consultation through online media, followed by two workshops through which a large number of potential science questions were collated, prioritised, and synthesised. In spite of the diversity of the participants (230 scientists in total), the process revealed much about community priorities and the state of our science: a preference for continuity in research questions rather than radical departures or redirections from past and current work. Questions remain focused on the process-based understanding of hydrological variability and causality at all space and time scales. Increased attention to environmental change drives a new emphasis on understanding how change propagates across interfaces within the hydrological system and across disciplinary boundaries. In particular, the expansion of the human footprint raises a new set of questions related to human interactions with nature and water cycle feedbacks in the context of complex water management problems. We hope that this reflection and synthesis of the 23 unsolved problems in hydrology will help guide research efforts for some years to come.
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| 10. |
- Bustamante-Gil, Carolina, et al.
(författare)
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Checklist, new records, and taxonomic annotations of freshwater thecate dinoflagellate (Dinophyceae) in Colombia
- 2021
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Ingår i: Phytotaxa. - : Magnolia Press. - 1179-3155 .- 1179-3163. ; 509:2, s. 135-167
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Tidskriftsartikel (refereegranskat)abstract
- A study on the freshwater dinoflagellate (Dinophyceae) of Colombia was carried out based on samples from four swamps, nine reservoirs, a small insular lake, and additional specimens deposited in the phycological collection of Universidad de Antioquia, Colombia, and the collection of Universidad de La Plata, Argentina. For most species, detailed morphological descriptions and illustrations are provided. Moreover, the geographical distribution of the species is updated. Durinskia spp., Glochidinium penardiforme, Naiadinium polonicum, Peridiniopsis elpatiewskyi, Peridiniopsis quadridens, and Sphaerodinium fimbriatum, are reported for the first time in Colombia. Furthermore, the correct sulcal plate pattern was determined for Naidinium polonicum which has been misinterpreted in earlier literature.
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| 11. |
- Casanueva, Carlos, 1981-
(författare)
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Análisis dinámico de un eje de ferrocarril con capacidad de cambio de ancho automático
- 2010
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- El objetivo de la presente tesis es la mejora de los actuales ejes de ancho variable para su circulación por vías de alta velocidad (AV) a velocidades de hasta 300km/h. En la actualidad los vehículos con ejes de ancho variable no sobrepasan los 250km/h de velocidad de servicio en vías de AV, lo que supone un claro desaprovechamiento de recursos y dificultades de gestión del tráfico para el gestor de la infraestructura a causa de las distintas velocidades punta de los diferentes trenes. Los modelos ferroviarios convencionales no tienen en cuenta la flexibilidad asociada a los ejes y suponen que éstos son lo suficientemente rígidos como para no necesitar una modelización que tenga en cuenta su deformación estructural. Sin embargo, en los ejes de ancho variable, que poseen tanto mecanismos que permiten el desplazamiento lateral de rueda respecto al cuerpo de eje como mecanismos de bloqueo de dicho desplazamiento, tienen influencia diversas holguras, rozamiento entre superficies, y componentes intermedios entre ruedas y cuerpo de eje. Estos efectos provocan una flexibilización de la conexión entre ruedas y cuerpo de eje que es necesario estudiar. Por otra parte, en el caso de los ejes de ancho variable de cuerpo de eje no rotativo sus menores solicitaciones a fatiga permiten una importante reducción del diámetro del cuerpo de eje. Esto provoca una flexibilidad adicional muy superior a la de los ejes convencionales. Para el estudio de la influencia de este aumento de flexibilidad en el comportamiento dinámico del eje, en primer lugar se determina qué tipo de modelo permite la correcta representación de los efectos presentes en los análisis dinámicos. Además, se analiza en profundidad el comportamiento del eje de ancho variable, para facilitar el posterior estudio y simplificaciones, así como identificar los componentes críticos del mecanismo. En segundo lugar se calculan las relaciones esfuerzo-deformación para los distintos componentes del sistema: conjunto de rodamientos, cuerpo de eje, mecanismos de anclaje, etc. Dichas características se introducen en un modelo multicuerpo simplificado que es capaz de representar tanto ejes de ancho variable flexibles como ejes convencionales flexibles. Por último se realiza un análisis de la influencia de dichas características en el comportamiento dinámico del vehículo, así como el grado de influencia de cada una de ellas. Además se proponen posibles mejoras del sistema para mejorar sus prestaciones a altas velocidades.
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| 12. |
- Chaparro, Maria, et al.
(författare)
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Surgery due to Inflammatory Bowel Disease During Pregnancy: Mothers and Offspring Outcomes From an ECCO Confer Multicentre Case Series [Scar Study]
- 2022
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Ingår i: Journal of Crohn's & Colitis. - Oxford, United Kingdom : Oxford University Press. - 1873-9946 .- 1876-4479. ; 16:9, s. 1428-1435
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Tidskriftsartikel (refereegranskat)abstract
- Aims: i] To evaluate the evolution of pregnancies and offspring after inflammatory bowel disease [IBD] surgery during pregnancy; and ii] to describe the indications, the surgical techniques, and the frequency of caesarean section concomitant with surgery.Methods: Patients operated on due to IBD during pregnancy after 1998 were included. Participating clinicians were asked to review their databases to identify cases. Data on patients demographics, IBD characteristics, medical treatments, IBD activity, pregnancy outcomes, surgery, delivery, and foetal and maternal outcomes, were recorded.Results: In all, 44 IBD patients were included, of whom 75% had Crohns disease; 18% of the surgeries were performed in the first trimester, 55% in the second, and 27% in the third trimester. One patient had complications during surgery, and 27% had postsurgical complications. No patient died. Of deliveries, 70% were carried out by caesarean section. There were 40 newborns alive. There were four miscarriages/stillbirths [one in the first, two in the second, and one in the third trimester]; two occurred during surgery, and another two occurred 2 weeks after surgery; 14% of the surgeries during the second trimester and 64% of those in the third trimester ended up with a simultaneous caesarean section or vaginal delivery. Of the 40 newborns, 61% were premature and 47% had low birth weight; 42% of newborns needed hospitalisation [25% in the intensive care unit].Conclusions: IBD surgery during pregnancy remains an extremely serious situation. Therefore, surgical management should be performed in a multidisciplinary team, involving gastroenterologists, colorectal surgeons, obstetricians, and neonatal specialists.
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| 13. |
- Cruz, Raquel, et al.
(författare)
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Novel genes and sex differences in COVID-19 severity
- 2022
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Ingår i: Human Molecular Genetics. - : Oxford University Press. - 0964-6906 .- 1460-2083. ; 31:22, s. 3789-3806
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Tidskriftsartikel (refereegranskat)abstract
- Here, we describe the results of a genome-wide study conducted in 11 939 coronavirus disease 2019 (COVID-19) positive cases with an extensive clinical information that were recruited from 34 hospitals across Spain (SCOURGE consortium). In sex-disaggregated genome-wide association studies for COVID-19 hospitalization, genome-wide significance (P < 5 × 10−8) was crossed for variants in 3p21.31 and 21q22.11 loci only among males (P = 1.3 × 10−22 and P = 8.1 × 10−12, respectively), and for variants in 9q21.32 near TLE1 only among females (P = 4.4 × 10−8). In a second phase, results were combined with an independent Spanish cohort (1598 COVID-19 cases and 1068 population controls), revealing in the overall analysis two novel risk loci in 9p13.3 and 19q13.12, with fine-mapping prioritized variants functionally associated with AQP3 (P = 2.7 × 10−8) and ARHGAP33 (P = 1.3 × 10−8), respectively. The meta-analysis of both phases with four European studies stratified by sex from the Host Genetics Initiative (HGI) confirmed the association of the 3p21.31 and 21q22.11 loci predominantly in males and replicated a recently reported variant in 11p13 (ELF5, P = 4.1 × 10−8). Six of the COVID-19 HGI discovered loci were replicated and an HGI-based genetic risk score predicted the severity strata in SCOURGE. We also found more SNP-heritability and larger heritability differences by age (<60 or ≥60 years) among males than among females. Parallel genome-wide screening of inbreeding depression in SCOURGE also showed an effect of homozygosity in COVID-19 hospitalization and severity and this effect was stronger among older males. In summary, new candidate genes for COVID-19 severity and evidence supporting genetic disparities among sexes are provided.
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| 14. |
- Gil, Eduardo, et al.
(författare)
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Heart Rate Turbulence Analysis Based on Photoplethysmography
- 2013
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Ingår i: IEEE Transactions on Biomedical Engineering. - 1558-2531. ; 60:11, s. 3149-3155
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Tidskriftsartikel (refereegranskat)abstract
- The goal of this paper is to determine whether the photoplethysmography (PPG) can replace the ECG-based detection of heart rate turbulence. Using the PPG, classification of ventricular premature beats (VPBs) is accomplished with a linear classifier. The two conventional parameters turbulence onset and slope are studied together with a recently introduced parameter characterizing turbulence shape. Performance is studied on a dataset with 4131 VPBs, recorded from a total of 27 patients in different clinical contexts (hemodialysis treatment, intensive care monitoring, and electrophysiological study). The sensitivity/specificity of VPB classification was found to be 90.5/99.9%, with an accuracy of 99.3%, suggesting that classification of VPBs can be reliable made from the PPG. The main difference between the two types of turbulence analysis stems from the fact that the pulse transit time varies largely immediately after the VPB. Out of the 22 patients which had a sufficient number of VPBs, the outcome of the ECG-and PPG-based analysis was identical in 21. It is concluded that the PPG may serve as a surrogate technique for the ECG in turbulence analysis.
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| 15. |
- Grigonyte, Egle, et al.
(författare)
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Relative peripheral blood volume changes in response to ventricular premature beats during dialysis
- 2013
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Ingår i: [Host publication title missing]. - 2325-8861. ; 40, s. 209-212
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Konferensbidrag (refereegranskat)abstract
- The goal of this study is to determine whether peripheral blood volume fluctuations triggered by ventricular premature beats (VPBs) are significantly related to hypotensive symptoms during dialysis treatment. Patients treated with hemodialysis often suffer from cardiovascular disorders and uremic neuropathy, increasing the propensity to homeostatic imbalance that, in turn, may result in intradialytic hypotension, cramps, nausea, dizziness, headache and other complications. VPBs, being abundant in hemodialysis patients, can be viewed as an internal disturbance leading to imbalance through acute blood pressure drop and prolonged tissue deoxygenation. The present study investigates and quantifies VPB-induced relative peripheral blood volume changes, measured from the fingertip photoplethysmographic (PPG) waveform, and their significance for characterization of physiological recovery of a disturbed circulatory state. The mean decrease in PPG amplitude, corresponding to an initial post-ectopic drop in blood volume delivered to the periphery, was 4 ± 3% in asymptomatic treatments, whereas 17 ± 3% in symptomatic dialysis treatments. This result indicates that significant differences exist between the two groups of treatment, providing a potential for development of intradialytic risk predictors.
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| 16. |
- Grigonytė, Eglė, et al.
(författare)
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Relative peripheral blood volume changes induced by premature ectopic beats and their role in hemodialysis
- 2017
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Ingår i: Biomedical Signal Processing and Control. - : Elsevier BV. - 1746-8094. ; 31, s. 524-528
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Tidskriftsartikel (refereegranskat)abstract
- Hemodialysis patients often suffer from cardiovascular disorders and uremic neuropathy, increasing the propensity to homeostatic imbalance that, in turn, may result in intradialytic complications like cramp, nausea, and, worse, hypotension. Ectopic beats, being abundant in such patients, may lead to imbalance through repeated, sudden drops in blood pressure. By exploring the properties of postectopic peripheral circulation recovery, treatment sessions prone to intradialytic complications may be better identified. This paper introduces a novel method for quantifying changes in peripheral blood volume due to ventricular or supraventricular premature beats (VPBs or SVPBs). Using the fingertip photoplethysmographic pulse waveform, VPB and SVPB-induced changes in relative peripheral blood volume are quantified by the postectopic pulse amplitude. Two parameters are proposed for characterizing (i) the initial drop in peripheral blood volume following an ectopic beat, and (ii) the degree of postectopic peripheral circulation recovery. A small set of data from 16 hemodialysis sessions in 9 hypotension-prone patients are used to illustrate the method. In asymptomatic sessions, the first parameter was found to be 8 ± 13% (mean ± std), whereas, in symptomatic sessions, it increased to 32 ± 13%, suggesting that postectopic pulse amplitude recovery is related to intradialytic complications; similar results were obtained for the second parameter. Postectopic pulse amplitude recovery may also be of interest in other applications where relative changes in peripheral blood volume play a role.
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| 17. |
- Haugaard-Kedström, Linda M., et al.
(författare)
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A High-Affinity Peptide Ligand Targeting Syntenin Inhibits Glioblastoma
- 2021
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Ingår i: Journal of Medicinal Chemistry. - : American Chemical Society (ACS). - 0022-2623 .- 1520-4804. ; 64:3, s. 1423-1434
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Tidskriftsartikel (refereegranskat)abstract
- Despite the recent advances in cancer therapeutics, highly aggressive cancer forms, such as glioblastoma (GBM), still have very low survival rates. The intracellular scaffold protein syntenin, comprising two postsynaptic density protein-95/discslarge/zona occludens-1 (PDZ) domains, has emerged as a novel therapeutic target in highly malignant phenotypes including GBM. Here, we report the development of a novel, highly potent, and metabolically stable peptide inhibitor of syntenin, KSL-128114, which binds the PDZ1 domain of syntenin with nanomolar affinity. KSL-128114 is resistant toward degradation in human plasma and mouse hepatic microsomes and displays a global PDZ domain selectivity for syntenin. An X-ray crystal structure reveals that KSL128114 interacts with syntenin PDZ1 in an extended noncanonical binding mode. Treatment with KSL-128114 shows an inhibitory effect on primary GBM cell viability and significantly extends survival time in a patient-derived xenograft mouse model. Thus, KSL-128114 is a novel promising candidate with therapeutic potential for highly aggressive tumors, such as GBM.
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| 18. |
- Holmer, Mattias, et al.
(författare)
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Detection of ventricular premature beats based on the pressure signals of a hemodialysis machine
- 2018
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Ingår i: Medical Engineering and Physics. - : Elsevier BV. - 1350-4533. ; 51, s. 49-55
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Tidskriftsartikel (refereegranskat)abstract
- Monitoring of ventricular premature beats (VPBs), being abundant in hemodialysis patients, can provide information on cardiovascular instability and electrolyte imbalance. In this paper, we describe a method for VPB detection which explores the signals acquired from the arterial and the venous pressure sensors, located in the extracorporeal blood circuit of a hemodialysis machine. The pressure signals are mainly composed of a pump component and a cardiac component. The cardiac component, severely overshadowed by the pump component, is estimated from the pressure signals using an earlier described iterative method. A set of simple features is extracted, and linear discriminant analysis is performed to classify beats as either normal or ventricular premature. Performance is evaluated on signals from nine hemodialysis treatments, using leave-one-out crossvalidation. The simultaneously recorded and annotated photoplethysmographic signal serves as the reference signal, with a total of 149,686 normal beats and 3574 VPBs. The results show that VPBs can be reliably detected, quantified by a Youden's J statistic of 0.9, for average cardiac pulse pressures exceeding 1 mmHg; for lower pressures, the J statistic drops to 0.55. It is concluded that the cardiac pressure signal is suitable for VPB detection, provided that the average cardiac pulse pressure exceeds 1 mmHg.
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| 19. |
- Inoue, Juliana, et al.
(författare)
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Plasmodium falciparum Plasmepsin 2 Duplications, West Africa
- 2018
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Ingår i: Emerging Infectious Diseases. - : Centers for Disease Control and Prevention. - 1080-6040 .- 1080-6059. ; 24:8, s. 1591-1593
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Tidskriftsartikel (refereegranskat)abstract
- Dihydroartemisinin/piperaquine (DHA/PPQ) is increasingly deployed as antimalaria drug in Africa. We report the detection in Mali of Plasmodium falciparum infections carrying plasmepsin 2 duplications (associated with piperaquine resistance) in 7/65 recurrent infections within 2 months after DHA/PPQ treatment. These findings raise concerns about the long-term efficacy of DHA/PPQ treatment in Africa.
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| 20. |
- Jose Gomez-Hernandez, Eduardo, et al.
(författare)
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Efficient, Distributed, and Non-Speculative Multi-Address Atomic Operations
- 2021
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Ingår i: Proceedings of 54th Annual IEEE/ACM International Symposium on Microarchitecture, Micro 2021. - New York, NY, USA : Association for Computing Machinery (ACM). - 9781450385572 ; , s. 337-349
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Konferensbidrag (refereegranskat)abstract
- Critical sections that read, modify, and write (RMW) a small set of addresses are common in parallel applications and concurrent data structures. However, to escape from the intricacies of finegrained locks, which require reasoning about all possible thread interleavings, programmers often resort to coarse-grained locks to ensure atomicity. This results in atomic protection of a much larger set of potentially conflicting addresses, and, consequently, increased lock contention and unneeded serialization. As many before us have observed, these problems would be solved if only general RMW multi-address atomic operations were available, but current proposals are impractical because of deadlock scenarios that appear due to resource limitations. Alternatively, transactional memory can detect conflicts at run-time aiming to maximize concurrency, but it has significant overheads in highly-contended critical sections. In this work, we propose multi-address atomic operations (MAD atomics). MADatomics achieve complexity-effective, non-speculative, non-deadlocking, fine-grained locking for multiple addresses, relying solely on the coherence protocol and a predetermined locking order. Unlike prior works, MAD atomics address the challenge of enabling atomic modification over a set of cachelines with arbitrary addresses, simultaneously locking all of them while sidestepping deadlock. MAD atomics only require a small storage per core (around 68 bytes), while significantly outperforming typical lock implementations. Indeed, our evaluation using gem5-20 shows that MAD atomics can improve performance by up to 18x (3.4x, on average, for the applications and concurrent data structures evaluated in this work) over a baseline implemented with locks running on 16 cores. More importantly, the improvement still reaches 2.7x, on average, compared to an Intel hardware transactional memory implementation running on 16 cores.
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| 21. |
- Juanes-Velasco, Pablo, et al.
(författare)
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Deciphering Biomarkers for Leptomeningeal Metastasis in Malignant Hemopathies (Lymphoma/Leukemia) Patients by Comprehensive Multipronged Proteomics Characterization of Cerebrospinal Fluid
- 2022
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Ingår i: Cancers. - : MDPI AG. - 2072-6694. ; 14:2
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Tidskriftsartikel (refereegranskat)abstract
- Simple Summary The early diagnosis of leptomeningeal disease is a challenge because it is asymptomatic in the early stages. Consequently, it is important to identify a panel of biomarkers to help in its diagnosis and/or prognosis. For this purpose, we explored a multipronged proteomics approach in cerebrospinal fluid (CSF) to determine a potential panel of biomarkers. Thus, a systematic and exhaustive characterization of more than 300 CSF samples was performed by an integrated approach by Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) and functional proteomics analysis to establish protein profiles, which were useful for developing a panel of biomarkers validated by in silico approaches. In the present work, leptomeningeal disease, a very destructive form of systemic cancer, was characterized from several proteomics points of view. This pathology involves the invasion of the leptomeninges by malignant tumor cells. The tumor spreads to the central nervous system through the cerebrospinal fluid (CSF) and has a very grim prognosis; the average life expectancy of patients who suffer it does not exceed 3 months. The early diagnosis of leptomeningeal disease is a challenge because, in most of the cases, it is an asymptomatic pathology. When the symptoms are clear, the disease is already in the very advanced stages and life expectancy is low. Consequently, there is a pressing need to determine useful CSF proteins to help in the diagnosis and/or prognosis of this disease. For this purpose, a systematic and exhaustive proteomics characterization of CSF by multipronged proteomics approaches was performed to determine different protein profiles as potential biomarkers. Proteins such as PTPRC, SERPINC1, sCD44, sCD14, ANPEP, SPP1, FCGR1A, C9, sCD19, and sCD34, among others, and their functional analysis, reveals that most of them are linked to the pathology and are not detected on normal CSF. Finally, a panel of biomarkers was verified by a prediction model for leptomeningeal disease, showing new insights into the research for potential biomarkers that are easy to translate into the clinic for the diagnosis of this devastating disease.
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| 22. |
- Lazaro, Jesus, et al.
(författare)
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Electrocardiogram derived respiration from QRS slopes : Evaluation with stress testing recordings
- 2013
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Ingår i: 2013 Computing in Cardiology. - 9781479908844 ; 40, s. 655-658
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Konferensbidrag (refereegranskat)abstract
- A method for respiratory rate estimation from electrocardiogram (ECG), based on variations in QRS complexes slopes, is evaluated over stress testing recordings. Besides the 12 standard, and the 3 vectorcardiogram (VCG), 2 additional leads derived from the VCG are analyzed. A total of 34 slope series were studied, 2 for each lead: slopes between the peaks of the Q and R waves, and between the peaks of the R and S waves. Respiratory rate is estimated by using a time-frequency based algorithm which can combine information from several derived respiration signals. Evaluation was performed over a database containing ECG and respiratory signals simultaneously recorded from 30 subjects spontaneously breathing during a stress test. Respiratory rate estimation is performed with information of 4 different combinations of QRS slope series. The best results in respiratory rate estimation error terms are -1.07 ± 8.86% (-11.47 ± 37.97 mHz). These results suggest that proposed methods based on QRS slopes are highly suitable for respiratory rate estimation from ECG signal, specially at very non-stationary and noise scenarios as stress test.
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| 23. |
- Pinto, Rui, et al.
(författare)
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Attack Detection in Cyber-Physical Production Systems using the Deterministic Dendritic Cell Algorithm
- 2020
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Ingår i: Proceedings. - : IEEE. ; , s. 1552-1559
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Konferensbidrag (refereegranskat)abstract
- Cyber-Physical Production Systems (CPPS) are key enablers for industrial and economic growth. The introduction of the Internet of Things (IoT) in industrial processes represents a new revolution towards the Smart Manufacturing oncept and is usually designated as the 4 th Industrial Revolution. Despite the huge interest from the industry to innovate their production systems, in order to increase revenues at lower costs, the IoT concept is still immature and fuzzy, which increases security related risks in industrial systems. Facing this paradigm and, since CPPS have reached a level of complexity, where the human intervention for operation and control is becoming increasingly difficult, Smart Factories require autonomic methodologies for security management and self-healing. This paper presents an Intrusion Detection System (IDS) approach for CPPS, based on the deterministic Dendritic Cell Algorithm (dDCA). To evaluate the dDCA effectiveness, a testing dataset was generated, by implementing and injecting various attacks on a OPC UA based CPPS testbed. The results show that these attacks can be successfully detected using the dDCA.
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| 24. |
- Pinto, Rui, et al.
(författare)
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Enabling data-driven anomaly detection by design in cyber-physical production systems
- 2022
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Ingår i: Cybersecurity. - : Springer Nature. - 2523-3246. ; 5
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Tidskriftsartikel (refereegranskat)abstract
- Designing and developing distributed cyber-physical production systems (CPPS) is a time-consuming, complex, and error-prone process. These systems are typically heterogeneous, i.e., they consist of multiple components implemented with different languages and development tools. One of the main problems nowadays in CPPS implementation is enabling security mechanisms by design while reducing the complexity and increasing the system’s maintainability. Adopting the IEC 61499 standard is an excellent approach to tackle these challenges by enabling the design, deployment, and management of CPPS in a model-based engineering methodology. We propose a method for CPPS design based on the IEC 61499 standard. The method allows designers to embed a bio-inspired anomaly-based host intrusion detection system (A-HIDS) in Edge devices. This A-HIDS is based on the incremental Dendritic Cell Algorithm (iDCA) and can analyze OPC UA network data exchanged between the Edge devices and detect attacks that target the CPPS’ Edge layer. This study’s findings have practical implications on the industrial security community by making novel contributions to the intrusion detection problem in CPPS considering immune-inspired solutions, and cost-effective security by design system implementation. According to the experimental data, the proposed solution can dramatically reduce design and code complexity while improving application maintainability and successfully detecting network attacks without negatively impacting the performance of the CPPS Edge devices.
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| 25. |
- Pinto, Rui, et al.
(författare)
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Incremental Dendritic Cell Algorithm for Intrusion Detection in Cyber-Physical Production Systems
- 2021
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Ingår i: Intelligent Computing. - Cham : Springer. ; , s. 664-680
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Konferensbidrag (refereegranskat)abstract
- Cyber-Physical Production Systems (CPPS) are becoming increasingly more susceptible to security vulnerabilities, specially with the introduction of IoT principles in manufacturing scenarios. Since security is crucial to the development and acceptance of CPPS, flexible adaptation to real CPPS security environment and reasonable response to real-time CPPS security events are needed. This paper presents an Intrusion Detection System (IDS) approach for CPPS, based on an extended version of the Dendritic Cell Algorithm (DCA), designated as Incremental Dendritic Cell Algorithm (iDCA). Facing the industrial requirements for intrusion detection and response, the proposed solution enables online incremental detection in an unsupervised manner. Results show that the approach is a viable solution to detect anomalies in (near) real-time, specially in environments with little a priori system knowledge for intrusion detection.
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| 26. |
- Ruiz, Héctor A., et al.
(författare)
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Severity factor kinetic model as a strategic parameter of hydrothermal processing (steam explosion and liquid hot water) for biomass fractionation under biorefinery concept
- 2021
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Ingår i: Bioresource Technology. - : Elsevier BV. - 0960-8524. ; 342
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Forskningsöversikt (refereegranskat)abstract
- Hydrothermal processes are an attractive clean technology and cost-effective engineering platform for biorefineries based in the conversion of biomass to biofuels and high-value bioproducts under the basis of sustainability and circular bioeconomy. The deep and detailed knowledge of the structural changes by the severity of biomasses hydrothermal fractionation is scientifically and technological needed in order to improve processes effectiveness, reactors designs, and industrial application of the multi-scale target compounds obtained by steam explosion and liquid hot water systems. The concept of the severity factor [log10 (Ro)] established>30 years ago, continues to be a useful index that can provide a simple descriptor of the relationship between the operational conditions for biomass fractionation in second generation of biorefineries. This review develops a deep explanation of the hydrothermal severity factor based in lignocellulosic biomass fractionation with emphasis in research advances, pretreatment operations and the applications of severity factor kinetic model.
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| 27. |
- Sörnmo, Leif, et al.
(författare)
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Noninvasive techniques for prevention of intradialytic hypotension
- 2012
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Ingår i: IEEE Transactions on Biomedical Engineering. - 1558-2531. ; 5, s. 45-59
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Tidskriftsartikel (refereegranskat)abstract
- Episodes of hypotension during hemodialysis treatment constitutes an important clinical problem which has received considerable attention in recent years. Despite the fact that numerous approaches to reducing the frequency of intradialytic hypotension (IDH) have been proposed and evaluated, the problem has not yet found a definitive solution--an observation which, in particular, applies to episodes of acute, symptomatic hypotension. This overview covers recent advances in methodology for predicting and preventing IDH. Following a brief overview of well-established hypotension-related variables, including blood pressure, blood temperature, relative blood volume, and bioimpedance, special attention is given to electrocardiographic and photoplethysmographic (PPG) variables and their significance for IDH prediction. It is concluded that cardiovascular variables which reflect heart rate variability, heart rate turbulence, and baroreflex sensitivity are important to explore in feedback control hemodialysis systems so as to improve their performance. The analysis of hemodialysis-related changes in PPG pulse wave properties hold considerable promise for improving prediction.
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| 28. |
- Varon, Carolina, et al.
(författare)
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A Comparative Study of ECG-derived Respiration in Ambulatory Monitoring using the Single-lead ECG
- 2020
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 10:1
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Tidskriftsartikel (refereegranskat)abstract
- Cardiorespiratory monitoring is crucial for the diagnosis and management of multiple conditions such as stress and sleep disorders. Therefore, the development of ambulatory systems providing continuous, comfortable, and inexpensive means for monitoring represents an important research topic. Several techniques have been proposed in the literature to derive respiratory information from the ECG signal. Ten methods to compute single-lead ECG-derived respiration (EDR) were compared under multiple conditions, including different recording systems, baseline wander, normal and abnormal breathing patterns, changes in breathing rate, noise, and artifacts. Respiratory rates, wave morphology, and cardiorespiratory information were derived from the ECG and compared to those extracted from a reference respiratory signal. Three datasets were considered for analysis, involving a total 59 482 one-min, single-lead ECG segments recorded from 156 subjects. The results indicate that the methods based on QRS slopes outperform the other methods. This result is particularly interesting since simplicity is crucial for the development of ECG-based ambulatory systems.
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| 29. |
- Vialas, Vital, et al.
(författare)
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A multicentric study to evaluate the use of relative retention times in targeted proteomics
- 2017
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Ingår i: Journal of Proteomics. - : Elsevier BV. - 1874-3919. ; 152, s. 138-149
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Tidskriftsartikel (refereegranskat)abstract
- Despite the maturity reached by targeted proteomic strategies, reliable and standardized protocols are urgently needed to enhance reproducibility among different laboratories and analytical platforms, facilitating a more widespread use in biomedical research. To achieve this goal, the use of dimensionless relative retention times (iRT), defined on the basis of peptide standard retention times (RT), has lately emerged as a powerful tool. The robustness, reproducibility and utility of this strategy were examined for the first time in a multicentric setting, involving 28 laboratories that included 24 of the Spanish network of proteomics laboratories (ProteoRed-ISCIII). According to the results obtained in this study, dimensionless retention time values (iRTs) demonstrated to be a useful tool for transferring and sharing peptide retention times across different chromatographic set-ups both intra- and inter-laboratories. iRT values also showed very low variability over long time periods. Furthermore, parallel quantitative analyses showed a high reproducibility despite the variety of experimental strategies used, either MRM (multiple reaction monitoring) or pseudoMRM, and the diversity of analytical platforms employed. Biological significance From the very beginning of proteomics as an analytical science there has been a growing interest in developing standardized methods and experimental procedures in order to ensure the highest quality and reproducibility of the results. In this regard, the recent (2012) introduction of the dimensionless retention time concept has been a significant advance. In our multicentric (28 laboratories) study we explore the usefulness of this concept in the context of a targeted proteomics experiment, demonstrating that dimensionless retention time values is a useful tool for transferring and sharing peptide retention times across different chromatographic set-ups.
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