| 1. |
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| 2. |
- Attard, Karl M., et al.
(författare)
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Benthic oxygen exchange in a live coralline algal bed and an adjacent sandy habitat : an eddy covariance study
- 2015
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Ingår i: Marine Ecology Progress Series. - : Inter-Research. - 0171-8630 .- 1616-1599. ; 535, s. 99-115
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Tidskriftsartikel (refereegranskat)abstract
- Coralline algal (maerl) beds are widespread, slow-growing, structurally complex perennial habitats that support high biodiversity, yet are significantly understudied compared to seagrass beds or kelp forests. We present the first eddy covariance (EC) study on a live maerl bed, assessing the community benthic gross primary productivity (GPP), respiration (R), and net ecosystem metabolism (NEM) derived from diel EC time series collected during 5 seasonal measurement campaigns in temperate Loch Sween, Scotland. Measurements were also carried out at an adjacent (similar to 20 m distant) permeable sandy habitat. The O-2 exchange rate was highly dynamic, driven by light availability and the ambient tidally-driven flow velocity. Linear relationships between the EC O-2 fluxes and available light indicate that the benthic phototrophic communities were light limited. Compensation irradiance (E-c) varied seasonally and was typically similar to 1.8-fold lower at the maerl bed compared to the sand. Substantial GPP was evident at both sites; however, the maerl bed and the sand habitat were net heterotrophic during each sampling campaign. Additional inputs of similar to 4 and similar to 7 mol m(-2) yr(-1) of carbon at the maerl bed and sand site, respectively, were required to sustain the benthic O-2 demand. Thus, the 2 benthic habitats efficiently entrap organic carbon and are sinks of organic material in the coastal zone. Parallel deployment of 0.1 m(2) benthic chambers during nighttime revealed O-2 uptake rates that varied by up to similar to 8-fold between replicate chambers (from -0.4 to -3.0 mmol O-2 m(-2) h(-1); n = 4). However, despite extensive O-2 flux variability on meter horizontal scales, mean rates of O-2 uptake as resolved in parallel by chambers and EC were typically within 20% of one another.
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| 3. |
- Attard, Karl M., et al.
(författare)
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Metabolism of a subtidal rocky mussel reef in a high-temperate setting : pathways of organic C flow
- 2020
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Ingår i: Marine Ecology Progress Series. - : Inter-Research Science Center. - 0171-8630 .- 1616-1599. ; 645, s. 41-54
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Tidskriftsartikel (refereegranskat)abstract
- Mytilid mussels form abundant, species-rich reefs on rocky substrates, but the role of this key habitat in carbon (C) cycling remains poorly understood. We performed a seasonal study on a 5 m deep photic Mytilus trossulus reef in the Central Baltic Sea to investigate pathways and rates of organic C flow. Reef gross primary production (GPP) and respiration (R) were estimated seasonally using underwater O2 eddy covariance on hourly and daily timescales. Photogrammetry and biotic sampling were used to quantify reef rugosity and mussel coverage, and to derive mussel filtration and biodeposition. Mussels were highly abundant, reaching ~50000 ind. m-2, and the reef structure increased the seabed surface area by 44%. GPPhourly was up to 20 mmol O2 m-2 h-1 and GPPdaily was up to 107 mmol O2 m-2 d-1, comparable to a nearby seagrass canopy. Hourly eddy fluxes responded linearly to light intensity and flow velocity, with higher velocities enhancing reef O2 uptake at night. Reef Rdaily exceeded GPPdaily on 12 of 13 measurement days, and Rannual (29 mol O2 m-2 yr-1) was 3-fold larger than GPPannual. The reef sustained a productive community of microbes and fauna whose activities accounted for ~50% of Rannual. Horizontal water advection promoted food supply to the reef and likely facilitated substantial lateral C export of mussel biodeposits. Our analyses suggest that a reduction in mussel reef extent due to ongoing environmental change will have major implications for the transport and transformation of C and nutrients within the coastal Baltic Sea.
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| 4. |
- Attard, Karl M., et al.
(författare)
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Seasonal ecosystem metabolism across shallow benthic habitats measured by aquatic eddy covariance
- 2019
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Ingår i: Limnology and Oceanography Letters. - : Wiley. - 2378-2242. ; 4:3, s. 79-86
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Tidskriftsartikel (refereegranskat)abstract
- Shallow benthic habitats are hotspots for carbon cycling and energy flow, but metabolism (primary production and respiration) dynamics and habitat-specific differences remain poorly understood. We investigated daily, seasonal, and annual metabolism in six key benthic habitats in the Baltic Sea using similar to 2900h of in situ aquatic eddy covariance oxygen flux measurements. Rocky substrates had the highest metabolism rates. Habitat-specific annual primary production per m(2) was in the order Fucus vesiculosus canopy>Mytilus trossulus reef>Zostera marina canopy>mixed macrophytes canopy>sands, whereas respiration was in the order M. trossulus>F. vesiculosus>Z. marina>mixed macrophytes> sands>aphotic sediments. Winter metabolism contributed 22-31% of annual rates. Spatial upscaling revealed that benthic habitats drive >90% of ecosystem metabolism in waters <= 5 m depth, highlighting their central role in carbon and nutrient cycling in shallow waters.
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| 5. |
- Balmonte, John Paul, et al.
(författare)
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Sharp contrasts between freshwater and marine microbial enzymatic capabilities, community composition, and DOM pools in a NE Greenland fjord
- 2020
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Ingår i: Limnology and Oceanography. - : WILEY. - 0024-3590 .- 1939-5590. ; 65:1, s. 77-95
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Tidskriftsartikel (refereegranskat)abstract
- Increasing glacial discharge can lower salinity and alter organic matter (OM) supply in fjords, but assessing the biogeochemical effects of enhanced freshwater fluxes requires understanding of microbial interactions with OM across salinity gradients. Here, we examined microbial enzymatic capabilities-in bulk waters (nonsize-fractionated) and on particles (>= 1.6 mu m)-to hydrolyze common OM constituents (peptides, glucose, polysaccharides) along a freshwater-marine continuum within Tyrolerfjord-Young Sound. Bulk peptidase activities were up to 15-fold higher in the fjord than in glacial rivers, whereas bulk glucosidase activities in rivers were twofold greater, despite fourfold lower cell counts. Particle-associated glucosidase activities showed similar trends by salinity, but particle-associated peptidase activities were up to fivefold higher-or, for several peptidases, only detectable-in the fjord. Bulk polysaccharide hydrolase activities also exhibited freshwater-marine contrasts: xylan hydrolysis rates were fivefold higher in rivers, while chondroitin hydrolysis rates were 30-fold greater in the fjord. Contrasting enzymatic patterns paralleled variations in bacterial community structure, with most robust compositional shifts in river-to-fjord transitions, signifying a taxonomic and genetic basis for functional differences in freshwater and marine waters. However, distinct dissolved organic matter (DOM) pools across the salinity gradient, as well as a positive relationship between several enzymatic activities and DOM compounds, indicate that DOM supply exerts a more proximate control on microbial activities. Thus, differing microbial enzymatic capabilities, community structure, and DOM composition-interwoven with salinity and water mass origins-suggest that increased meltwater may alter OM retention and processing in fjords, changing the pool of OM supplied to coastal Arctic microbial communities.
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| 6. |
- Bonaglia, Stefano, et al.
(författare)
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Meiofauna improve oxygenation and accelerate sulfide removal in the seasonally hypoxic seabed
- 2020
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Ingår i: Marine Environmental Research. - : Elsevier BV. - 0141-1136 .- 1879-0291. ; 159
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Tidskriftsartikel (refereegranskat)abstract
- Oxygen depleted areas are widespread in the marine realm. Unlike macrofauna, meiofauna are abundant in hypoxic sediments. We studied to what extent meiofauna affect oxygen availability, sulfide removal and microbial communities. Meiofauna were extracted alive and added to intact sediments simulating abundance gradients previously reported in the area. A total of 324 porewater microprofiles were recorded over a 3-week incubation period and microbial community structure and cable bacteria densities were determined at the end of the experiment. At high abundances meiofauna activity deepened oxygen penetration by 85%, 59%, and 62% after 5, 14, and 22 days, respectively, compared to control sediment with scarce meiofauna. After 6 days, meiofauna increased the volume of oxidized, sulfide-free sediment by 68% and reduced sulfide fluxes from 8.8 to 0.4 mmol m(-2) d(-1). After 15 days, the difference with the control attenuated due to the presence of a cable bacteria population, which facilitated sulfides oxidation in all treatments. 16S rRNA gene analysis revealed that meiofauna affected microbial community structure (beta diversity). Thus, meiofauna bioturbation plays an important role in deepening oxygen penetration, counteracting euxinia and in structuring microbial diversity of hypoxic sediments. Co-existence with cable bacteria demonstrates neutralism interaction between these two ecosystem engineers.
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| 7. |
- Carroll, Christopher, et al.
(författare)
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Hypoxia Generated by Avian Embryo Growth Induces the HIF-α Response and Critical Vascularization
- 2021
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Ingår i: Frontiers in Ecology and Evolution. - : Frontiers Media SA. - 2296-701X. ; 9, s. 1-15
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Tidskriftsartikel (refereegranskat)abstract
- Cancer research has transformed our view on cellular mechanisms for oxygen sensing. It has been documented that these mechanisms are important for maintaining animal tissues and life in environments where oxygen (O2) concentrations fluctuate. In adult animals, oxygen sensing is governed by the Hypoxia Inducible Factors (HIFs) that are stabilized at low oxygen concentrations (hypoxia). However, the importance of hypoxia itself during development and for the onset of HIF-driven oxygen sensing remains poorly explored. Cellular responses to hypoxia associates with cell immaturity (stemness) and proper tissue and organ development. During mammalian development, the initial uterine environment is hypoxic. The oxygenation status during avian embryogenesis is more complex since O2 continuously equilibrates across the porous eggshell. Here, we investigate HIF dynamics and use microelectrodes to determine O2 concentrations within the egg and the embryo during the first four days of development. To determine the increased O2 consumption rates, we also obtain the O2 transport coefficient (DO2) of eggshell and associated inner and outer shell membranes, both directly (using microelectrodes in ovo for the first time) and indirectly (using water evaporation at 37.5°C for the first time). Our results demonstrate a distinct hypoxic phase (<5% O2) between day 1 and 2, concurring with the onset of HIF-α expression. This phase of hypoxia is demonstrably necessary for proper vascularization and survival. Our indirectly determined DO2 values are about 30% higher than those determined directly. A comparison with previously reported values indicates that this discrepancy may be real, reflecting that water vapor and O2 may be transported through the eggshell at different rates. Based on our obtained DO2 values, we demonstrate that increased O2 consumption of the growing embryo appears to generate the phase of hypoxia, which is also facilitated by the initially small gas cell and low membrane permeability. We infer that the phase of in ovo hypoxia facilitates correct avian development. These results support the view that hypoxic conditions, in which the animal clade evolved, remain functionally important during animal development. The study highlights that insights from the cancer field pertaining to the cellular capacities by which both somatic and cancer cells register and respond to fluctuations in O2 concentrations can broadly inform our exploration of animal development and success.
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| 8. |
- Cheung, Henry Lok Shan, et al.
(författare)
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Denitrification, anammox, and DNRA in oligotrophic continental shelf sediments
- 2024
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Ingår i: Limnology and Oceanography. - 1939-5590 .- 0024-3590.
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Tidskriftsartikel (refereegranskat)abstract
- Continental shelf sediments are considered hotspots for nitrogen (N) removal. While most investigations have quantified denitrification in shelves receiving large amounts of anthropogenic nutrient supply, we lack insight into the key drivers of N removal on oligotrophic shelves. Here, we measured rates of N removal through denitrification and anammox by the revised-isotope pairing technique (r-IPT) along the Northeastern New Zealand shelf. Denitrification dominated total N2 production at depths between 30 and 128 m with average rates (± SE) ranging from 65 ± 28 to 284 ± 72 μmol N m−2 d−1. N2 production by anammox ranged from 3 ± 1 to 28 ± 11 μmol N m−2 d−1 and accounted for 2–19% of total N2 production. DNRA was negligible in these oligotrophic settings. Parallel microbial community analysis showed that both Proteobacteria and Planctomycetota were key taxa driving denitrification. Denitrification displayed a negative correlation with oxygen penetration depth, and a positive correlation with macrofauna abundance. Our denitrification rates were comparable to oligotrophic shelves from the Arctic, but were lower than those from nutrient-rich Pacific and Atlantic shelves. Based on our results and existing IPT measurements, the global shelf denitrification rate was reassessed to be 53.5 ± 8.1 Tg N yr−1, equivalent to 20 ± 2% of marine N removal. We suggest that previous estimates of global shelf N loss might have been overestimated due to sampling bias toward areas with high N loads in the Northern Hemisphere.
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| 9. |
- Maciute, Adele, et al.
(författare)
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A microsensor-based method for measuring respiration of individual nematodes
- 2021
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Ingår i: Methods in Ecology and Evolution. - 2041-210X. ; 12:10, s. 1841-1847
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Tidskriftsartikel (refereegranskat)abstract
- Meiofauna (invertebrates that pass through a 1-mm mesh sieve, but are retained on a 40-µm mesh) represent the most abundant and diverse animal group on Earth, but empirical evidence of their role in benthic respiration, production and carbon cycling across ecosystems is not well documented. Moreover, how meiofauna respond to changing oxygen conditions is poorly understood. We further developed an incubation system, in which oxygen and temperature conditions are easily controlled and single meiofaunal nematode respiration is resolved in glass capillary tubes, using Clark-type oxygen microsensor. We performed the respiration measurements after exposing nematodes to different ambient oxygen concentrations, which resulted in 3–60µM O2 during hypoxic and 80–210µM O2 during oxic incubations in close proximity to the respective nematodes. Individual nematode respiration rates ranged from 0.02 to 1.30nmol O2 ind.−1day−1 and were 27% lower during hypoxic than oxic incubations. Rates derived from established allometric relations were on average fourfold higher than our direct measurements. The presented method is suitable for single nematode respiration measurements and can be adapted to a wide range of experimental conditions. Therefore, it can be used to assess meiofauna contribution to ecosystem processes and investigate species-specific responses to changing environmental conditions, for example, oxygen stress, increasing water temperature.
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| 10. |
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| 11. |
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| 12. |
- Parmentier, Frans Jan W, et al.
(författare)
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A synthesis of the arctic terrestrial and marine carbon cycles under pressure from a dwindling cryosphere
- 2017
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Ingår i: Ambio: a Journal of the Human Environment. - : Springer Science and Business Media LLC. - 0044-7447. ; 46, s. 53-69
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Tidskriftsartikel (refereegranskat)abstract
- The current downturn of the arctic cryosphere, such as the strong loss of sea ice, melting of ice sheets and glaciers, and permafrost thaw, affects the marine and terrestrial carbon cycles in numerous interconnected ways. Nonetheless, processes in the ocean and on land have been too often considered in isolation while it has become increasingly clear that the two environments are strongly connected: Sea ice decline is one of the main causes of the rapid warming of the Arctic, and the flow of carbon from rivers into the Arctic Ocean affects marine processes and the air–sea exchange of CO2. This review, therefore, provides an overview of the current state of knowledge of the arctic terrestrial and marine carbon cycle, connections in between, and how this complex system is affected by climate change and a declining cryosphere. Ultimately, better knowledge of biogeochemical processes combined with improved model representations of ocean–land interactions are essential to accurately predict the development of arctic ecosystems and associated climate feedbacks.
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| 13. |
- Rodil, Iván F., et al.
(författare)
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Towards a sampling design for characterizing habitat-specific benthic biodiversity related to oxygen flux dynamics using Aquatic Eddy Covariance
- 2019
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 14:2
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Tidskriftsartikel (refereegranskat)abstract
- The Aquatic Eddy Covariance (AEC) technique has emerged as an important method to quantify in situ seafloor metabolism over large areas of heterogeneous benthic communities, enabling cross-habitat comparisons of seafloor productivity. However, the lack of a corresponding sampling protocol to perform biodiversity comparisons across habitats is impeding a full assessment of marine ecosystem metabolism. Here, we study a range of coastal benthic habitats, from rocky-bed communities defined by either perennial macroalgae or blue mussel beds to soft-sediment communities comprised of either seagrass, patches of different macrophyte species or bare sand. We estimated that the maximum contribution to the AEC metabolic flux can be found for a seafloor area of approximately 80 m(2) with a 5 meter upstream distance of the instrument across all the habitats. We conducted a sampling approach to characterize and quantify the dominant features of biodiversity (i.e., community biomass) within the main seafloor area of maximum metabolic contribution (i.e., gross primary production and community respiration) measured by the AEC. We documented a high biomass contribution of the macroalgal Fucus vesiculosus, the seagrass Zostera marina and the macroinvertebrate Mytilus edulis to the net ecosystem metabolism of the habitats. We also documented a significant role of the bare sediments for primary productivity compared to vegetated canopies of the soft sediments. The AEC also provided insight into dynamic short-term drivers of productivity such as PAR availability and water flow velocity for the productivity estimate. We regard this study as an important step forward, setting a framework for upcoming research focusing on linking biodiversity metrics and AEC flux measurements across habitats.
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| 14. |
- Sobek, Anna, et al.
(författare)
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Organic matter degradation causes enrichment of organic pollutants in hadal sediments
- 2023
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Ingår i: Nature Communications. - 2041-1723. ; 14
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Tidskriftsartikel (refereegranskat)abstract
- Burial of persistent organic pollutants (POPs) such as polychlorinated biphenyls (PCBs) in deep-sea sediments contributes to 60% of their historical emissions. Yet, empirical data on their occurrence in the deep-ocean is scarce. Estimates of the deep-ocean POP sink are therefore uncertain. Hadal trenches, representing the deepest part of the ocean, are hotspots for organic carbon burial and decomposition. POPs favorably partition to organic carbon, making trenches likely significant sinks for contaminants. Here we show that PCBs occur in both hadal (7720–8085 m) and non-hadal (2560–4050 m) sediment in the Atacama Trench. PCB concentrations normalized to sediment dry weight were similar across sites while those normalized to sediment organic carbon increased exponentially as the inert organic carbon fraction of the sediment increased in degraded hadal sediments. We suggest that the unique deposition dynamics and elevated turnover of organic carbon in hadal trenches increase POP concentrations in the deepest places on Earth.
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| 15. |
- Stief, Peter, et al.
(författare)
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Intracellular nitrate storage by diatoms can be an important nitrogen pool in freshwater and marine ecosystems
- 2022
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Ingår i: Communications Earth and Environment. - : Springer Science and Business Media LLC. - 2662-4435. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Identifying and quantifying nitrogen pools is essential for understanding the nitrogen cycle in aquatic ecosystems. The ubiquitous diatoms represent an overlooked nitrate pool as they can accumulate nitrate intracellularly and utilize it for nitrogen assimilation, dissipation of excess photosynthetic energy, and Dissimilatory Nitrate Reduction to Ammonium (DNRA). Here, we document the global co-occurrence of diatoms and intracellular nitrate in phototrophic microbial communities in freshwater (n = 69), coastal (n = 44), and open marine (n = 4) habitats. Diatom abundance and total intracellular nitrate contents in water columns, sediments, microbial mats, and epilithic biofilms were highly significantly correlated. In contrast, diatom community composition had only a marginal influence on total intracellular nitrate contents. Nitrate concentrations inside diatom cells exceeded ambient nitrate concentrations ∼100–4000-fold. The collective intracellular nitrate pool of the diatom community accounted for <1% of total nitrate in pelagic habitats and 65–95% in benthic habitats. Accordingly, nitrate-storing diatoms are emerging as significant contributors to benthic nitrogen cycling, in particular through Dissimilatory Nitrate Reduction to Ammonium activity under anoxic conditions.
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| 16. |
- Turnewitsch, Robert, et al.
(författare)
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Recent sediment dynamics in hadal trenches : Evidence for the influence of higher-frequency (tidal, near-inertial) fluid dynamics
- 2014
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Ingår i: Deep Sea Research Part I. - : Elsevier BV. - 0967-0637 .- 1879-0119. ; 90, s. 125-138
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Tidskriftsartikel (refereegranskat)abstract
- In addition to high hydrostatic pressure, scarcity of food is viewed as a factor that limits the abundance and activity of heterotrophic organisms at great ocean depths, including hadal trenches. Supply of nutritious food largely relies on the flux of organic-rich particulate matter from the surface ocean. It has been speculated that the shape of hadal trenches helps to 'funnel' particulate matter into the deeper parts of the trench, leading to sediment 'focussing' and improved benthic food supply. Here we investigate for five Northwest Pacific trenches the efficiency of sediment focussing by evaluating ratios of measured (sediment-derived) and expected (water-column-derived) sedimentary inventories of the naturally occurring and radioactive particulate-matter tracer Pb-210(xs). The sites comprise a broad range of surface-ocean productivity and physical-oceanographic regimes. Across the five trench-axis settings the inventory ratio varies between 0.5 and 4.1, with four trench-axis settings having ratios > 1 (sediment focussing) and one trench-axis setting a ratio < 1 (sediment winnowing). Although the fluid- and sediment-dynamical forcing behind sediment focussing remains unclear, this study finds evidence for another mechanism that is superimposed on, and counteracts, the focussing mechanism. This superimposed mechanism is related to higher-frequency (tidal, near-inertial) fluid dynamics. In particular, there is evidence for a strong and negative relation between the intensity of propagating internal tides and the extent of sediment focussing in the trench-axis. The relation can be approximated by a power function and the most intense drop in sediment focussing already occurs at moderate internal-tide intensities. This suggests that propagating internal tides may have a subtle but significant influence on particulate-matter dynamics and food supply in hadal trenches in particular, but possibly also in the deep seas in general. A mechanism for the influence of internal tides on sediment dynamics is proposed.
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| 17. |
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