| 1. |
- Aartsen, M. G., et al.
(författare)
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Development of a general analysis and unfolding scheme and its application to measure the energy spectrum of atmospheric neutrinos with IceCube
- 2015
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Ingår i: European Physical Journal C. - : Springer Science and Business Media LLC. - 1434-6044 .- 1434-6052. ; 75:3
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Tidskriftsartikel (refereegranskat)abstract
- We present the development and application of a generic analysis scheme for the measurement of neutrino spectra with the IceCube detector. This scheme is based on regularized unfolding, preceded by an event selection which uses a Minimum Redundancy Maximum Relevance algorithm to select the relevant variables and a random forest for the classification of events. The analysis has been developed using IceCube data from the 59-string configuration of the detector. 27,771 neutrino candidates were detected in 346 days of livetime. A rejection of 99.9999 % of the atmospheric muon background is achieved. The energy spectrum of the atmospheric neutrino flux is obtained using the TRUEE unfolding program. The unfolded spectrum of atmospheric muon neutrinos covers an energy range from 100 GeV to 1 PeV. Compared to the previous measurement using the detector in the 40-string configuration, the analysis presented here, extends the upper end of the atmospheric neutrino spectrum by more than a factor of two, reaching an energy region that has not been previously accessed by spectral measurements.
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| 2. |
- Abbasi, R., et al.
(författare)
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Search for muon neutrinos from gamma-ray bursts with the IceCube neutrino telescope
- 2010
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Ingår i: Astrophysical Journal. - 0004-637X .- 1538-4357. ; 710:1, s. 346-359
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Tidskriftsartikel (refereegranskat)abstract
- We present the results of searches for high-energy muon neutrinos from 41 gamma-ray bursts (GRBs) in the northern sky with the IceCube detector in its 22 string configuration active in 2007/2008. The searches cover both the prompt and a possible precursor emission as well as a model-independent, wide time window of -1 hr to + 3 hr around each GRB. In contrast to previous searches with a large GRB population, we do not utilize a standard Waxman-Bahcall GRB flux for the prompt emission but calculate individual neutrino spectra for all 41 GRBs from the burst parameters measured by satellites. For all of the three time windows, the best estimate for the number of signal events is zero. Therefore, we place 90% CL upper limits on the fluence from the prompt phase of 3.7 x 10(-3) erg cm(-2) (72 TeV-6.5 PeV) and on the fluence from the precursor phase of 2.3 x 10(-3) erg cm(-2) (2.2-55 TeV), where the quoted energy ranges contain 90% of the expected signal events in the detector. The 90% CL upper limit for the wide time window is 2.7 x 10(-3) erg cm(-2) (3 TeV-2.8 PeV) assuming an E-2 flux.
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| 3. |
- Zamora, Juan Carlos, et al.
(författare)
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- 2018
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Ingår i: IMA Fungus. - : INT MYCOLOGICAL ASSOC. - 2210-6340 .- 2210-6359. ; 9:1, s. 167-185
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Tidskriftsartikel (refereegranskat)abstract
- Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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| 4. |
- Halldórsson, Sæmundur A., et al.
(författare)
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Petrology and geochemistry of the 2014–2015 Holuhraun eruption, central Iceland : compositional and mineralogical characteristics, temporal variability and magma storage
- 2018
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Ingår i: Contributions to Mineralogy and Petrology. - : Springer Science and Business Media LLC. - 0010-7999 .- 1432-0967. ; 173:8
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Tidskriftsartikel (refereegranskat)abstract
- The 2014–2015 Holuhraun fissure eruption provided a rare opportunity to study in detail the magmatic processes and magma plumbing system dynamics during a 6-month-long, moderate- to large-volume basaltic fissure eruption. In this contribution, we present a comprehensive dataset, including major and trace elements of whole-rock and glassy tephra samples, mineral chemistry, and radiogenic and oxygen isotope analyses from an extensive set of samples (n = 62) that were collected systematically in several field campaigns throughout the entire eruptive period. We also present the first detailed chemical and isotopic characterization of magmatic sulfides from Iceland. In conjunction with a unique set of geophysical data, our approach provides a detailed temporal and spatial resolution of magmatic processes before and during this eruption. The 2014–2015 Holuhraun magma is compositionally indistinguishable from recent basalts erupted from the Bárðarbunga volcanic system, consistent with seismic observations for magma ascent close to the Bárðarbunga central volcano, followed by dyke propagation to the Holuhraun eruption site. Whole-rock elemental and isotopic compositions are remarkably constant throughout the eruption. Moreover, the inferred depth of the magma reservoir tapped during the eruption is consistently 8 ± 5 km, in agreement with geodetic observations and melt inclusion entrapment pressures, but inconsistent with vertically extensive multi-tiered magma storage prior to eruption. The near constancy in the chemical and isotopic composition of the lava is consistent with the efficient homogenization of mantle-derived compositional variability. In contrast, occurrence of different mineral populations, including sulfide globules, which display significant compositional variability, requires a more complex earlier magmatic history. This may include sampling of heterogeneous mantle melts that mixed, crystallized and finally homogenized at mid- to lower-crustal conditions.
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| 5. |
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| 6. |
- Ahlbeck Bergendahl, Ida, et al.
(författare)
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Determining the effects of duration and recency of exposure to environmental enrichment
- 2016
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Ingår i: Applied Animal Behaviour Science. - : Elsevier BV. - 0168-1591 .- 1872-9045. ; 176, s. 163-169
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Tidskriftsartikel (refereegranskat)abstract
- Experience can help animals adapt their behaviour to fit the environment or conditions that they find themselves in. Understanding how and when experience affects behaviour is important for the animals we rear in captivity. This is particularly true when we rear animals with the intent of releasing them into the wild as part of population rehabilitation and conservation efforts. We investigated how exposure to a changing, more complex environment promotes behavioural development in juvenile trout. Four groups of fish were compared; (i) fish that were maintained without enrichment, (ii) fish that were exposed to an early period of enrichment, but were then returned to a plain environment, (iii) fish that were maintained in plain conditions, but were then exposed to enrichment towards the end of the rearing phase, (iv) a group that were kept in enriched conditions throughout the 12 week rearing period. We then assessed fish anxiety levels, their spatial learning ability, and the capacity of the fish to find their way through a barrier where different routes were presented across 4 different trials. Fish that experienced enriched conditions for the longest duration had superior spatial learning abilities, and they were better at finding the correct route to get past the barrier than fish from the remaining three treatments. Positive effects on behaviour were, however, also found in the fish that only experienced enrichment in the last part of the rearing period, compared to the control, or fish exposed to early enrichment. No effect of enrichment was found on levels of anxiety in any of the groups.
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| 7. |
- Barjesteh van Waalwijk van Doorn-Khosrovani, Sahar, et al.
(författare)
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PCM4EU and PRIME-ROSE : Collaboration for implementation of precision cancer medicine in Europe
- 2024
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Ingår i: Acta Oncologica. - 1651-226X .- 1651-226X. ; 63, s. 385-391
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: In the two European Union (EU)-funded projects, PCM4EU (Personalized Cancer Medicine for all EU citizens) and PRIME-ROSE (Precision Cancer Medicine Repurposing System Using Pragmatic Clinical Trials), we aim to facilitate implementation of precision cancer medicine (PCM) in Europe by leveraging the experience from ongoing national initiatives that have already been particularly successful. PATIENTS AND METHODS: PCM4EU and PRIME-ROSE gather 17 and 24 partners, respectively, from 19 European countries. The projects are based on a network of Drug Rediscovery Protocol (DRUP)-like clinical trials that are currently ongoing or soon to start in 11 different countries, and with more trials expected to be established soon. The main aims of both the projects are to improve implementation pathways from molecular diagnostics to treatment, and reimbursement of diagnostics and tumour-tailored therapies to provide examples of best practices for PCM in Europe. RESULTS: PCM4EU and PRIME-ROSE were launched in January and July 2023, respectively. Educational materials, including a podcast series, are already available from the PCM4EU website (http://www.pcm4eu.eu). The first reports, including an overview of requirements for the reimbursement systems in participating countries and a guide on patient involvement, are expected to be published in 2024. CONCLUSION: European collaboration can facilitate the implementation of PCM and thereby provide affordable and equitable access to precision diagnostics and matched therapies for more patients. ble from the PCM4EU website (http://www.pcm4eu.eu). The first reports, including an overview of requirements for the reimbursement systems in participating countries and a guide on patient involvement, are expected to be published in 2024. CONCLUSION: European collaboration can facilitate the implementation of PCM and thereby provide affordable and equitable access to precision diagnostics and matched therapies for more patients.
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| 8. |
- Currie, Bronwen, et al.
(författare)
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Living dangerously: implications of hydrogen sulphide events for marine life along the Namibian coast : A.G.V. Salvanes6, R. Bahlo5
- 2008
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Ingår i: International Symposium on Eastern Boundary Upwelling Ecosystems: Spain.
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Konferensbidrag (populärvet., debatt m.m.)abstract
- Hypoxia, anoxia and free hydrogen sulphide in the water column are characteristic of the inner shelf coastal upwelling system off central Namibia. Biogeochemical monitoring of the diatomaceous sediments along the central coast over a 3-year period, coupled with acoustic studies and ROV video coverage, indicated a major role played by the seafloor in the generation and control of H2S into the water column. We determined the sedimentary processes resulting in the generation and dispersal of hydrogen sulphide, and its effect on some of the locally important fishes and invertebrates.Marked interannual variability with no obvious seasonal trends was apparent in methane contents of sediments even over the short three-year period, whilst sulphate reduction rates in the sediment showed little change. The large sulphur bacteria Thiomargarita namibiensis and Beggiatoa spp. form dense mats over extensive areas of mud and oxidize sulphide at the sediment-water interface, thereby regulating its flux into the overlying water. During episodic events however, hydrogen sulphide pervades the entire water column, followed by severe hypoxia. Under experimental conditions, the survival of juvenile horse mackerel Trachurus trachurus capensis was limited to less than two hours in water containing <0.7ml.l-1 dissolved oxygen. If sulphide was also present survival time was reduced to less than 30 minutes. In contrast, pelagic gobies Sufflogobius bibarbatus survive exposure to extended periods of anoxia and water containing sulphide. Gobies are found abundantly on the muddy seafloor where they evidently possess both physiological and behavioural strategies to survive sulphide and anoxia, accounting for the success of this species in Namibian waters and its importance as a key diet species for predatory fish, seabirds and marine mammals.
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| 9. |
- Fors, Egil A, et al.
(författare)
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Psychosocial interventions as part of breast cancer rehabilitation programs? Results from a systematic review
- 2011
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Ingår i: Psycho-Oncology. - : Wiley-Blackwell. - 1057-9249 .- 1099-1611. ; 20:9, s. 909-918
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Forskningsöversikt (refereegranskat)abstract
- Objective: This systematic review aimed to determine the effectiveness of psychoeducation, cognitive behavioural therapy (CBT) and social support interventions used in the rehabilitation of breast cancer (BC) patients. less thanbrgreater than less thanbrgreater thanMethods: We conducted a systematic literature search to identify randomised controlled trials of female BC patients who underwent different psychosocial interventions during or after primary cancer treatment. The methodological quality of all studies was independently assessed by two reviewers. Studies with low quality, less than 20 participants in each group, patients with metastatic cancer, data not presented separately for BC and studies that included other cancer types were excluded. less thanbrgreater than less thanbrgreater thanResults: Among 9617 identified studies, only 18 RCTs published between 1999 and 2008, including 3272 patients were finally included in this systematic evaluation. Outcome measures were categorised into quality of life (QoL), fatigue, mood, health behaviour and social function. Six trials examined psychoeducation had inconsistent results, both during and after the primary treatment. Seven trials examined the effect of CBT, four of which given after primary treatment (range 6-12 weeks) demonstrated improvements in QoL; the other three CBT studies given during primary treatment (range 9-20 weeks) had inconsistencies. Five studies addressed social support and showed no conclusive impacts of this intervention. less thanbrgreater than less thanbrgreater thanConclusions: Limited documentation exists on the efficacy of psychosocial rehabilitation interventions among BC patients. However, we found that patients might have QoL benefits from CBT given after primary BC treatment. More documentation is needed regarding the effects of CBT during primary treatment and the effects of psychoeducation and social support.
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| 10. |
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| 11. |
- Holde, Gro Eirin, et al.
(författare)
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Periodontitis prevalence and severity in adults : A cross-sectional study in Norwegian circumpolar communities
- 2017
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Ingår i: Journal of Periodontology. - : Wiley. - 0022-3492 .- 1943-3670. ; 88:10, s. 1012-1022
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The aim of this study was to describe the prevalence, severity and extent of periodontitis in the adult population of circumpolar communities in Norway using data from the study Tromstannen - Oral Health in Northern Norway.METHODS: In this cross-sectional survey, data were collected from a randomized population sample (20-79 years) in Northern Norway. Periodontal conditions were assessed for 1,911 dentate adults with a full-mouth periodontal examination. Probing depth (PD) and bleeding on probing (BoP) were measured at six sites per tooth. Radiographic bone loss (BL) was examined using orthopantomograms.RESULTS: According to the CDC/AAP case definition, 49.5% of participants had periodontitis and 9.1% had severe periodontitis. Periodontitis prevalence and severity increased with age. The extent of BL and PD ≥ 4 mm also increased with age, but more rapidly and to a greater extent for BL. The prevalence of periodontitis was higher among men and varied between urban and rural areas. Periodontitis prevalence was positively associated with smoking, lower levels of education and income.CONCLUSIONS: This study reveals a high burden of periodontitis among adults living in circumpolar communities in Norway. The results showed sociodemographic disparities regarding periodontitis, and highlights the importance of further investigation of factors influencing periodontal health.
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| 12. |
- Petrenya, Natalia, et al.
(författare)
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Empirically derived dietary patterns in relation to periodontitis and number of teeth among Norwegian adults
- 2024
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Ingår i: PUBLIC HEALTH NUTRITION. - 1368-9800 .- 1475-2727. ; 27:1
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Tidskriftsartikel (refereegranskat)abstract
- Objectives:To explore dietary patterns in relation to periodontitis and number of teeth.Design:A cross-sectional study.Setting:We used data from the seventh survey of the Tromso Study in Norway, 2015-2016. Three periodontitis groups were compared: (i) no periodontitis/slow bone loss; (ii) moderate bone loss; and (iii) rapid bone loss. Number of teeth was categorised as 25-28, 20-24 and <= 19. Dietary patterns were identified by principal component analysis. Multiple logistic regression was applied to examine associations between tertiles of dietary pattern scores and periodontitis, and between these same tertiles and number of teeth.Participants:1487 participants (55 center dot 5 % women) aged 40-79 years who were free of major chronic diseases, attended an oral health examination and completed a FFQ.Results:Four dietary patterns were identified, which explained 24 % of the total variability in food intake: fruit and vegetables, Westernised, meat/fish and potatoes, and refined grain and dessert. The fruit and vegetables pattern was inversely associated with periodontitis characterised by rapid bone loss when compared with no periodontitis/slow bone loss (OR tertile 3 v. 1 0 center dot 49, 95 % CI: 0 center dot 25, 0 center dot 98). Participants who were in the highest tertile of the refined grain and dessert pattern (tertile 3 v. 1) had 2 center dot 38- and 3 center dot 52-fold increased odds of having <= 19 than 20-24 and 25-28 teeth, respectively.Conclusion:Out of four identified dietary patterns, only the fruit and vegetables pattern was negatively associated with advanced periodontitis. A more apparent positive association was observed between the refined grain and dessert pattern and having fewer teeth (<= nineteen teeth).
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| 13. |
- Stoor, Jon Petter A., et al.
(författare)
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"If you do not birget [manage] then you don't belong here" : a qualitative focus group study on the cultural meanings of suicide among Indigenous Sámi in arctic Norway
- 2019
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Ingår i: International Journal of Circumpolar Health. - : Taylor & Francis. - 1239-9736 .- 2242-3982. ; 78:1
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Tidskriftsartikel (refereegranskat)abstract
- Suicide is a major public health issue across the Arctic, especially among Indigenous Peoples. The aim of this study was to explore and describe cultural meanings of suicide among Sámi in Norway. Five open-ended focus group discussions (FGDs) were conducted with 22 Sámi (20) and non-Sámi (2) participants in South, Lule, Marka, coastal and North Sámi communities in Norway. FGDs were recorded, transcribed verbatim and analysed employing thematic analysis. Six themes were developed from the analysis: "Sámi are treated negatively by the majority society", "Some Sámi face negative treatment from other Sámi", "The historic losses of the Sámi have turned into a void", "Sámi are not provided with equal mental health care", "The strong Sámi networks have both positive and negative impacts" and "'Birgetkultuvvra' might be a problem". The findings indicate that the participants understand suicide among Sámi in relation to increased problem load for Sámi (difficulties in life not encountered by non-Sámi) and inadequate problem-solving mechanisms on different levels, including lack of equal mental health care for Sámi and cultural values of managing by oneself ("ieš birget"). The findings are important when designing suicide prevention initiatives specifically targeting Sámi.
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| 14. |
- Taskén, Kjetil, et al.
(författare)
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Single point of entry to the European precision cancer medicine trial network PRIME-ROSE
- 2024
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Ingår i: Journal of Clinical Oncology. - : American Society of Clinical Oncology. - 1527-7755 .- 0732-183X. ; 42:16
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Konferensbidrag (refereegranskat)abstract
- Background: Over the last decades, there has been a surge in the development and approval of targeted drugs and immunotherapies for treating cancer patients, as seen by the 757 % increase in approvals by the FDA for new cancer treatments since 2000 (1). This has significantly impacted cancer care and contributed to improving overall survival in various cancer subgroups. However, access to these new treatments is constrained by the market access strategy of the patent-owning company and available knowledge of treatment effects. Only a few treatments have received pan-cancer approval from EMA or FDA, and most drugs receive market authorization per indication. As a result, there is a widening access gap between patients with different cancer types (2). Methods: Exploring the effect of biomarker-driven treatments in new cancer subtypes requires the ability to find patients with rare biomarkers. PRIME-ROSE is a European precision medicine network comprising 11 ongoing or soon-to-start national DRUP-like clinical trials testing registered drugs outside their current label (www.prime-rose.eu). Patients with relevant tumor biomarkers are identified and treated with matched drugs available in each trial’s drug portfolio. The ambition is to swiftly and systematically evaluate the effectiveness of approved precision cancer medicines in new indications through pragmatic trial designs and with RWE control cohorts, ensuring expansion into all relevant patient groups to maximize societal benefit. This is particularly relevant for rare cancers, which are enriched in precision medicine trials (3). Results: In PRIME-ROSE, the trials now share and aggregate data to build evidence faster and more effectively impact patient care by addressing key challenges in precision cancer medicine implementation (increasing the recruitment area to 71 million inhabitants). This will significantly reduce the time for filling treatment cohorts and contribute to closing the indication/drug-specific knowledge gap. In fact, several pharmaceutical companies have already shown their interest in and commitment to participating in PRIME-ROSE, as it offers the unique advantage of entering the trials in the network simultaneously (single point of entry) and with a floating allocation of treatment slots between trials, increasing efficiency in finding patients with specific biomarkers to fill treatment cohorts. Conclusions: A unified entry point to the PRIME-ROSE network is feasible and can facilitate building the knowledge base faster for label expansion and/or country-specific approvals/ reimbursement. National multi-stakeholder ecosystems that include pragmatic, RWE-controlled DRUP-like clinical trials may advance precision medicine implementation.
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