| 1. |
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| 2. |
- Beal, Jacob, et al.
(author)
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Robust estimation of bacterial cell count from optical density
- 2020
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In: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
-
Journal article (peer-reviewed)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
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| 4. |
- Kristan, Matej, et al.
(author)
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The first visual object tracking segmentation VOTS2023 challenge results
- 2023
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In: 2023 IEEE/CVF International conference on computer vision workshops (ICCVW). - : Institute of Electrical and Electronics Engineers Inc.. - 9798350307443 - 9798350307450 ; , s. 1788-1810
-
Conference paper (peer-reviewed)abstract
- The Visual Object Tracking Segmentation VOTS2023 challenge is the eleventh annual tracker benchmarking activity of the VOT initiative. This challenge is the first to merge short-term and long-term as well as single-target and multiple-target tracking with segmentation masks as the only target location specification. A new dataset was created; the ground truth has been withheld to prevent overfitting. New performance measures and evaluation protocols have been created along with a new toolkit and an evaluation server. Results of the presented 47 trackers indicate that modern tracking frameworks are well-suited to deal with convergence of short-term and long-term tracking and that multiple and single target tracking can be considered a single problem. A leaderboard, with participating trackers details, the source code, the datasets, and the evaluation kit are publicly available at the challenge website1
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| 5. |
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| 6. |
- Kattge, Jens, et al.
(author)
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TRY plant trait database - enhanced coverage and open access
- 2020
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In: Global Change Biology. - : Wiley-Blackwell. - 1354-1013 .- 1365-2486. ; 26:1, s. 119-188
-
Journal article (peer-reviewed)abstract
- Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
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| 7. |
- Klionsky, Daniel J., et al.
(author)
-
Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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In: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
-
Research review (peer-reviewed)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 8. |
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| 9. |
- Campbell, PJ, et al.
(author)
-
Pan-cancer analysis of whole genomes
- 2020
-
In: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 578:7793, s. 82-
-
Journal article (peer-reviewed)abstract
- Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1–3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5,6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8,9; and evaluates a range of more-specialized features of cancer genomes8,10–18.
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| 10. |
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| 11. |
- Chen, Z., et al.
(author)
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An iteration-based algorithm for two-pass flute grinding of slide round milling tools
- 2020
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In: The International Journal of Advanced Manufacturing Technology. - : Springer Nature. - 0268-3768 .- 1433-3015. ; 111:9-10, s. 2533-2543
-
Journal article (peer-reviewed)abstract
- Solid end mill cutting tools are widely used in machining of curved surface parts in many industrial sectors, e.g., aerospace, automotive, and energy. Grinding is one of the most important processes in the manufacturing of the tools, and the movement of the grinding wheel closely influences the key parameters of helical groove cross-section, i.e., rake angle γo, inner core radius Rc, outer core radius Rcb, and edge width Ew, as well as chip removal capacity. However, a “closed” flute of a tool, which is one style of flute, may cause many problems if grinding it by one-pass, e.g., grinding wheel dressing to adapt to the change of flute parameters. To solve the problem in “closed” flute grinding, this paper proposes a two-pass flute grinding based on the iteration method. Within the context, some parameters and rules are identified in modeling of the two-pass grinding to control grinding wheel width and to smoothen grinding marks between the two passes of grinding. Finally, the method is implemented and validated by a set of numeric simulations and experiments. The results show that the errors of core radius, rake angle, edge width, and big core radius of the two ground tools are 1.1%, 2.0%, 3.4%, and 2.2%, respectively, which are within the designed tolerances.
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| 12. |
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| 13. |
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| 14. |
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| 15. |
- Figalova, Nikol, et al.
(author)
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Methodological Framework for Modelling and Empirical Approaches (Deliverable D1.1 in the H2020 MSCA ITN project SHAPE-IT)
- 2021
-
Reports (other academic/artistic)abstract
- The progress in technology development over the past decades, both with respect to software and hardware, offers the vision of automated vehicles as means of achieving zero fatalities in traffic. However, the promises of this new technology – an increase in road safety, traffic efficiency, and user comfort – can only be realized if this technology is smoothly introduced into the existing traffic system with all its complexities, constraints, and requirements. SHAPE- IT will contribute to this major undertaking by addressing research questions relevant for the development and introduction of automated vehicles in urban traffic scenarios. Previous research has pointed out several research areas that need more attention for a successful implementation and deployment of human-centred vehicle automation in urban environments. In SHAPE-IT, for example, a better understanding of human behaviour and the underlying psychological mechanisms will lead to improved models of human behaviour that can help to predict the effects of automated systems on human behaviour already during system development. Such models can also be integrated into the algorithms of automated vehicles, enabling them to better understand the human interaction partners’ behaviours. Further, the development of vehicle automation is much about technology (software and hardware), but the users will be humans and they will interact with humans both inside and outside of the vehicle. To be successful in the development of automated vehicles functionalities, research must be performed on a variety of aspects. Actually, a highly interdisciplinary team of researchers, bringing together expertise and background from various scientific fields related to traffic safety, human factors, human-machine interaction design and evaluation, automation, computational modelling, and artificial intelligence, is likely needed to consider the human-technology aspects of vehicle automation. Accordingly, SHAPE-IT has recruited fifteen PhD candidates (Early Stage Researchers – ESRs), that work together to facilitate this integration of automated vehicles into complex urban traffic by performing research to support the development of transparent, cooperative, accepted, trustworthy, and safe automated vehicles. With their (and their supervisors’) different scientific background, the candidates bring different theoretical concepts and methodological approaches to the project. This interdisciplinarity of the project team offers the unique possibility for each PhD candidate to address research questions from a broad perspective – including theories and methodological approaches of other interrelated disciplines. This is the main reason why SHAPE-IT has been funded by the European Commission’s Marie Skłodowska-Curie Innovative Training Network (ITN) program that is aimed to train early state researchers in multidisciplinary aspects of research including transferable skills. With the unique scope of SHAPE-IT, including the human-vehicle perspective, considering different road-users (inside and outside of the vehicle), addressing for example trust, transparency, and safety, and including a wide range of methodological approaches, the project members can substantially contribute to the development and deployment of safe and appreciated vehicle automation in the cities of the future. To achieve the goal of interdisciplinary research, it is necessary to provide the individual PhD candidate with a starting point, especially on the different and diverse methodological approaches of the different disciplines. The empirical, user-centred approach for the development and evaluation of innovative automated vehicle concepts is central to SHAPE- IT. This deliverable (D1.1 “Methodological Framework for Modelling and Empirical Approaches”) provides this starting point. That is, this document provides a broad overview of approaches and methodologies used and developed by the SHAPE-IT ESRs during their research. The SHAPE-IT PhD candidates, as well as other researchers and developers outside of SHAPE-IT, can use this document when searching for appropriate methodological approaches, or simply get a brief overview of research methodologies often employed in automated vehicle research. The first chapter of the deliverable shortly describes the major methodological approaches to collect data relevant for investigating road user behaviour. Each subchapter describes one approach, ranging from naturalistic driving studies to controlled experiments in driving simulators, with the goal to provide the unfamiliar reader with a broad overview of the approach, including its scope, the type of data collected, and its limitations. Each subchapter ends with recommendations for further reading – literature that provide much more detail and examples. The second chapter explains four different highly relevant tools for data collection, such as interviews, questionnaires, physiological measures, and as other current tools (the Wizard of Oz paradigm and Augmented and Virtual Reality). As in the first chapter this chapter provides the reader with information about advantages and disadvantages of the different tools and with proposed further readings. The third chapter deals with computational models of human/agent interaction and presents in four subchapters different modelling approaches, ranging from models based on psychological mechanisms, rule-based and artificial intelligence models to simulation models of traffic interaction. The fourth chapter is devoted to Requirements Engineering and the challenge of communicating knowledge (e.g., human factors) to developers of automated vehicles. When forming the SHAPE-IT proposal it was identified that there is a lack of communication of human factors knowledge about the highly technical development of automated vehicles. This is why it is highly important that the SHAPE-IT ESRs get training in requirement engineering. Regardless of the ESRs working in academia or industry after their studies it is important to learn how to communicate and disseminate the findings to engineers. The deliverable ends with the chapter “Method Champions”. Here the expertise and association of the different PhD candidates with the different topics are made explicit to facilitate and encourage networking between PhDs with special expertise and those seeking support, especially with regards to methodological questions.
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| 16. |
- He, Li, et al.
(author)
-
Evolutionary origin and establishment of a dioecious diploid-tetraploid complex
- 2023
-
In: Molecular Ecology. - : John Wiley & Sons. - 0962-1083 .- 1365-294X. ; 32:11, s. 2732-2749
-
Journal article (peer-reviewed)abstract
- Polyploids recurrently emerge in angiosperms, but most polyploids are likely to go extinct before establishment due to minority cytotype exclusion, which may be specifically a constraint for dioecious plants. Here we test the hypothesis that a stable sex-determination system and spatial/ecological isolation facilitate the establishment of dioecious polyploids. We determined the ploidy levels of 351 individuals from 28 populations of the dioecious species Salix polyclona, and resequenced 190 individuals of S. polyclona and related taxa for genomic diversity analyses. The ploidy survey revealed a frequency 52% of tetraploids in S. polyclona, and genomic k-mer spectra analyses suggested an autopolyploid origin for them. Comparisons of diploid male and female genomes identified a female heterogametic sex-determining factor on chromosome 15, which probably also acts in the dioecious tetraploids. Phylogenetic analyses revealed two diploid clades and a separate clade/grade of tetraploids with a distinct geographic distribution confined to western and central China, where complex mountain systems create higher levels of environmental heterogeneity. Fossil-calibrated phylogenies showed that the polyploids emerged during 7.6–2.3 million years ago, and population demographic histories largely matched the geological and climatic history of the region. Our results suggest that inheritance of the sex-determining system from the diploid progenitor as intrinsic factor and spatial isolation as extrinsic factor may have facilitated the preservation and establishment of polyploid dioecious populations.
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| 17. |
- He, Lu-Jun, et al.
(author)
-
Genetic polymorphisms of N-acetyltransferase 2 and colorectal cancer risk.
- 2005
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In: World Journal of Gastroenterology. - 1007-9327 .- 2219-2840. ; 11:27, s. 4268-4271
-
Journal article (peer-reviewed)abstract
- AIM: To identify the distribution of N-acetyltrasferase 2(NAT2) polymorphism in Hebei Han Chinese and the effects of the polymorphism on the development of colorectal cancer. METHODS: We performed a hospital-based case-control study of 237 healthy individuals and 83 colorectal cancer patients of Hebei Han Chinese. DNA was extracted from peripheral blood and cancer tissues. The genotypes of the polymorphisms were assessed by PCR-restriction fragment length polymorphism (RFLP). RESULTS: There were four NAT2 alleles of WT, M1, M2, and M3 both in the healthy subjects and in the patients, and 10 genotypes of WT/WT, WT/M1, WT/M2, WT/M3, M1/M1, M1/M2, M1/M3, M2/M2, M2/M3, M3/M3. M2 allele was present in 15.61% of healthy subjects and 29.52% of patients (chi(2) = 15.31, P<0.0001), and M3 allele was present in 30.59% of healthy subjects and 16.87% of patients (chi(2) = 25.33, P<0.0001). There were more WT/M2 (chi(2) = 34.42, P<0.0001, odd ratio = 4.99, 95%CI = 2.27-9.38) and less WT/M3 (chi(2) = 3.80, P = 0.03) in the patients than in the healthy subjects. In 70.3% of the patients, there was a difference in NAT2 genotype between their tumors and blood cells. Patients had more WT/M2 (chi(2) = 5.11, P = 0.02) and less M2/M3 (chi(2) = 4.27, P = 0.039) in their blood cells than in the tumors. Furthermore, 53.8% (7/13) of M2/M3 in tumors were from WT/M2 of blood cells. CONCLUSION: There is a possible relationship between the NAT2 polymorphisms and colorectal cancer in Hebei Han Chinese. The genotype WT/M2 may be a risk factor for colorectal cancer.
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| 18. |
- He, Ting, et al.
(author)
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Poly(vinylidene fluoride) (PVDF) membrane fabrication with an ionic liquid via non-solvent thermally induced phase separation (N-TIPs)
- 2022
-
In: Applied water science. - : Springer. - 2190-5487 .- 2190-5495. ; 12:3
-
Journal article (peer-reviewed)abstract
- In this paper, ionic liquid 1-butyl-3-methylimidazolium tetrafluoroborate was the first time successfully utilized as single solvent in preparing the PVDF membrane with a good performance by N-TIPs method. The effects of quenching temperature and hydrophilic additive content on the morphology, permeability, and strength of the membranes were studied. All the prepared PVDF membranes were proved to be a pure β phase by FTIR and XRD, possessing a narrow pore size distribution. By adjusting quenching temperature and additive content, membranes with a flux of 383.2 L/m2 h and concentrated pore diameter of 26 nm obtained.
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| 19. |
- Huang, Wei, et al.
(author)
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Substrate Promiscuity, Crystal Structure, and Application of a Plant UDP-Glycosyltransferase UGT74AN3
- 2024
-
In: ACS Catalysis. - : American Chemical Society (ACS). - 2155-5435. ; 14:1, s. 475-488
-
Journal article (peer-reviewed)abstract
- Glycosyltransferases are effective enzymes for glycosylating natural products (NPs), and some of them have the unusual property of being exceedingly promiscuous catalytically toward a range of substrates. UGT74AN3 is a plant glycosyltransferase identified from Catharanthus roseus in our previous work. In this study, we found that UGT74AN3 exhibits high substrate promiscuity toward 78 acceptors and 6 sugar donors and also exhibits N-/S-glycosylation activity toward simple aromatic compounds. The crystal structures of UGT74AN3 in the complex with various NPs were solved. Sugar donor recognition of UGT74AN3 was altered by structure-based mutagenesis, and the T145V mutant shifted its sugar donor preference from UDP-Glc to UDP-Xyl. Structural analysis reveals that a spacious U-shaped hydrophobic binding pocket accounts for the high substrate promiscuity of UGT74AN3. The residues E85 and F193 might serve as gatekeepers of UGT74AN3 to control substrate binding. In addition, a rare substrate binding mode was discovered in the structure of UGT74AN3, and the process of substrate flipping in the pocket was charted by molecular dynamics simulations. Moreover, a cost-effective one-pot system by coupling UGT74AN3 with AtSuSy, a sucrose synthase, was established for in situ generating and recycling UDP-Glc from sucrose and UDP to glycosylate NPs. Our study reveals the structural basis underlying the substrate promiscuity of UGT74AN3 and provides an efficient and economical enzymatic synthesis strategy for producing valuable glycosides for drug discovery.
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| 20. |
- Ji, Xinyu, et al.
(author)
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Epigenetic–smoking interaction reveals histologically heterogeneous effects of TRIM27 DNA methylation on overall survival among early-stage NSCLC patients
- 2020
-
In: Molecular Oncology. - : Wiley. - 1574-7891 .- 1878-0261. ; 14:11, s. 2759-2774
-
Journal article (peer-reviewed)abstract
- Tripartite motif containing 27 (TRIM27) is highly expressed in lung cancer, including non-small-cell lung cancer (NSCLC). Here, we profiled DNA methylation of lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) tumours from 613 early-stage NSCLC patients and evaluated associations between CpG methylation of TRIM27 and overall survival. Significant CpG probes were confirmed in 617 samples from The Cancer Genome Atlas. The methylation of the CpG probe cg05293407TRIM27 was significantly associated with overall survival in patients with LUSC (HR = 1.65, 95% CI: 1.30–2.09, P = 4.52 × 10−5), but not in patients with LUAD (HR = 1.08, 95% CI: 0.87–1.33, P = 0.493). As incidence of LUSC is associated with higher smoking intensity compared to LUAD, we investigated whether smoking intensity impacted on the prognostic effect of cg05293407TRIM27 methylation in NSCLC. LUSC patients had a higher average pack-year of smoking (37.49LUAD vs 54.79LUSC, P = 1.03 × 10−19) and included a higher proportion of current smokers than LUAD patients (28.24%LUAD vs 34.09%LUSC, P = 0.037). cg05293407TRIM27 was significantly associated with overall survival only in NSCLC patients with medium–high pack-year of smoking (HR = 1.58, 95% CI: 1.26–1.96, P = 5.25 × 10−5). We conclude that cg05293407TRIM27 methylation is a potential predictor of LUSC prognosis, and smoking intensity may impact on its prognostic value across the various types of NSCLC.
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| 21. |
- Klionsky, Daniel J., et al.
(author)
-
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
- 2008
-
In: Autophagy. - : Landes Bioscience. - 1554-8627 .- 1554-8635. ; 4:2, s. 151-175
-
Research review (peer-reviewed)abstract
- Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
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| 22. |
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| 23. |
- Li, Wenlong, et al.
(author)
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Enantiospecific photoresponse of sterically hindered diarylethenes for chiroptical switches and photomemories
- 2015
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In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 5
-
Journal article (peer-reviewed)abstract
- Light-driven transcription, replication and enzyme catalysis are critically dependent upon a delicate transfer between molecular and supramolecular chirality. Chemists have well realized the impressive stereospecificity over many thermally accessible cycloaddition with chiral catalysts, but making light work in the enantiomer control of diarylethene photocyclization has proved to be more challenging. Here, we report a unique sterically hindered diarylethene (BBTE) system with absolute enantiospecific photocyclization and cycloreversion. Moreover, we have fully separated all the five thermally stable isomers, consisting of one achiral parallel conformer, one pair of anti-parallel ring-open enantiomers, and another pair of ring-closed enantiomers, whose absolute chiral configurations are entirely elucidated by single X-ray crystallographic analyses. The photo-responsive feature exhibits a reversible, complete enantio-control transformation without racemism, offering an unrivaled unimolecular enantiospecific platform for potential applications as bistable chiroptical switches and all-photonic photomemories with optical rotation as non-destructive readout.
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| 24. |
- Li, Xing, et al.
(author)
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Molecular engineering of D-A-pi-A sensitizers for highly efficient solid-state dye-sensitized solar cells
- 2017
-
In: Journal of Materials Chemistry A. - : RSC Publishing. - 2050-7488 .- 2050-7496. ; 5:7, s. 3157-3166
-
Journal article (peer-reviewed)abstract
- Two newquinoxaline-based D-A-pi-A organic sensitizers AQ309 and AQ310 have been designed and synthesized employing 3,4-ethylenedioxythiophene (EDOT) and cyclopentadithiophene (CPDT) as plinker units, respectively. The new AQ309 and AQ310 dyes have been applied in all-solid-state dye-sensitized solar cells (ssDSSCs). An impressive record photoelectric conversion efficiency (PCE) of 8.0% for AQ310-based ssDSSCs using Spiro-OMeTAD as the hole transport material (HTM) was obtained under standard AM 1.5 (100 mW cm (2)) solar intensity. This clearly outperforms the PCE of the state-of-theart organic D-pi-A dye LEG4-based devices showing a PCE of 7.3% under the same conditions. Moreover, an excellent high PCE of 8.6% was also recorded for AQ310-based devices under 50% solar intensity. Meanwhile, the AQ310-based ssDSSCs showed a much longer electron lifetime according to the transient photovoltage decay measurement, demonstrating lower charge recombination losses in the devices. Photo-induced absorption spectroscopy (PIA) indicated that AQ310 could be more efficiently regenerated by Spiro-OMeTAD. These results show that molecular engineering is a promising strategy to develop D-A-pi-A organic sensitizers for highly efficient ssDSSCs.
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| 25. |
- Michaut, Magali, et al.
(author)
-
Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer.
- 2016
-
In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 6
-
Journal article (peer-reviewed)abstract
- Invasive lobular carcinoma (ILC) is the second most frequently occurring histological breast cancer subtype after invasive ductal carcinoma (IDC), accounting for around 10% of all breast cancers. The molecular processes that drive the development of ILC are still largely unknown. We have performed a comprehensive genomic, transcriptomic and proteomic analysis of a large ILC patient cohort and present here an integrated molecular portrait of ILC. Mutations in CDH1 and in the PI3K pathway are the most frequent molecular alterations in ILC. We identified two main subtypes of ILCs: (i) an immune related subtype with mRNA up-regulation of PD-L1, PD-1 and CTLA-4 and greater sensitivity to DNA-damaging agents in representative cell line models; (ii) a hormone related subtype, associated with Epithelial to Mesenchymal Transition (EMT), and gain of chromosomes 1q and 8q and loss of chromosome 11q. Using the somatic mutation rate and eIF4B protein level, we identified three groups with different clinical outcomes, including a group with extremely good prognosis. We provide a comprehensive overview of the molecular alterations driving ILC and have explored links with therapy response. This molecular characterization may help to tailor treatment of ILC through the application of specific targeted, chemo- and/or immune-therapies.
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| 26. |
- Ni, Yuanzhi, et al.
(author)
-
Toward Reliable and Scalable Internet-of-Vehicles : Performance Analysis and Resource Management
- 2020
-
In: Proceedings of the IEEE. - New York, NY : Institute of Electrical and Electronics Engineers (IEEE). - 0018-9219 .- 1558-2256. ; 108:2, s. 324-340
-
Journal article (peer-reviewed)abstract
- Reliable and scalable wireless transmissions for Internet-of-Vehicles (IoV) are technically challenging. Each vehicle, from driver-assisted to automated one, will generate a flood of information, up to thousands of times of that by a person. Vehicle density may change drastically over time and location. Emergency messages and real-time cooperative control messages have stringent delay constraints while infotainment applications may tolerate a certain degree of latency. On a congested road, thousands of vehicles need to exchange information badly, only to find that service is limited due to the scarcity of wireless spectrum. Considering the service requirements of heterogeneous IoV applications, service guarantee relies on an in-depth understanding of network performance and innovations in wireless resource management leveraging the mobility of vehicles, which are addressed in this article. For single-hop transmissions, we study and compare the performance of vehicle-to-vehicle (V2V) beacon broadcasting using random access-based (IEEE 802.11p) and resource allocation-based (cellular vehicle-to-everything) protocols, and the enhancement strategies using distributed congestion control. For messages propagated in IoV using multihop V2V relay transmissions, the fundamental network connectivity property of 1-D and 2-D roads is given. To have a message delivered farther away in a sparse, disconnected V2V network, vehicles can carry and forward the message, with the help of infrastructure if possible. The optimal locations to deploy different types of roadside infrastructures, including storage-only devices and roadside units with Internet connections, are analyzed. © 2019 IEEE
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| 27. |
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| 28. |
- Sarneel, Judith M., et al.
(author)
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Reading tea leaves worldwide : decoupled drivers of initial litter decomposition mass-loss rate and stabilization
- 2024
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In: Ecology Letters. - : John Wiley & Sons. - 1461-023X .- 1461-0248. ; 27:5
-
Journal article (peer-reviewed)abstract
- The breakdown of plant material fuels soil functioning and biodiversity. Currently, process understanding of global decomposition patterns and the drivers of such patterns are hampered by the lack of coherent large-scale datasets. We buried 36,000 individual litterbags (tea bags) worldwide and found an overall negative correlation between initial mass-loss rates and stabilization factors of plant-derived carbon, using the Tea Bag Index (TBI). The stabilization factor quantifies the degree to which easy-to-degrade components accumulate during early-stage decomposition (e.g. by environmental limitations). However, agriculture and an interaction between moisture and temperature led to a decoupling between initial mass-loss rates and stabilization, notably in colder locations. Using TBI improved mass-loss estimates of natural litter compared to models that ignored stabilization. Ignoring the transformation of dead plant material to more recalcitrant substances during early-stage decomposition, and the environmental control of this transformation, could overestimate carbon losses during early decomposition in carbon cycle models.
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| 29. |
- Schuettpelz, Eric, et al.
(author)
-
A community-derived classification for extant lycophytes and ferns
- 2016
-
In: Journal of Systematics and Evolution. - : Wiley. - 1674-4918 .- 1759-6831. ; 54:6, s. 563-603
-
Journal article (peer-reviewed)abstract
- Phylogeny has long informed pteridophyte classification. As our ability to infer evolutionary trees has improved, classifications aimed at recognizing natural groups have become increasingly predictive and stable. Here, we provide a modern, comprehensive classification for lycophytes and ferns, down to the genus level, utilizing a community-based approach. We use monophyly as the primary criterion for the recognition of taxa, but also aim to preserve existing taxa and circumscriptions that are both widely accepted and consistent with our understanding of pteridophyte phylogeny. In total, this classification treats an estimated 11 916 species in 337 genera, 51 families, 14 orders, and two classes. This classification is not intended as the final word on lycophyte and fern taxonomy, but rather a summary statement of current hypotheses, derived from the best available data and shaped by those most familiar with the plants in question. We hope that it will serve as a resource for those wanting references to the recent literature on pteridophyte phylogeny and classification, a framework for guiding future investigations, and a stimulus to further discourse.
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| 30. |
- Shi, Weibo, et al.
(author)
-
Optimizing Observation Plans for Identifying Faxon Fir (Abies fargesii var. Faxoniana) Using Monthly Unmanned Aerial Vehicle Imagery
- 2023
-
In: Remote Sensing. - 2072-4292. ; 15:8
-
Journal article (peer-reviewed)abstract
- Faxon fir (Abies fargesii var. faxoniana), as a dominant tree species in the subalpine coniferous forest of Southwest China, has strict requirements regarding the temperature and humidity of the growing environment. Therefore, the dynamic and continuous monitoring of Faxon fir distribution is very important to protect this highly sensitive ecological environment. Here, we combined unmanned aerial vehicle (UAV) imagery and convolutional neural networks (CNNs) to identify Faxon fir and explored the identification capabilities of multispectral (five bands) and red-green-blue (RGB) imagery under different months. For a case study area in Wanglang Nature Reserve, Southwest China, we acquired monthly RGB and multispectral images on six occasions over the growing season. We found that the accuracy of RGB imagery varied considerably (the highest intersection over union (IoU), 83.72%, was in April and the lowest, 76.81%, was in June), while the accuracy of multispectral imagery was consistently high (IoU > 81%). In April and October, the accuracy of the RGB imagery was slightly higher than that of multispectral imagery, but for the other months, multispectral imagery was more accurate (IoU was nearly 6% higher than those of the RGB imagery for June). Adding vegetation indices (VIs) improved the accuracy of the RGB models during summer, but there was still a gap to the multispectral model. Hence, our results indicate that the optimized time of the year for identifying Faxon fir using UAV imagery is during the peak of the growing season when using a multispectral imagery. During the non-growing season, RGB imagery was no worse or even slightly better than multispectral imagery for Faxon fir identification. Our study can provide guidance for optimizing observation plans regarding data collection time and UAV loads and could further help enhance the utility of UAVs in forestry and ecological research.
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| 31. |
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| 32. |
- Wang, Hong, et al.
(author)
-
Ambient Electrosynthesis of Ammonia : Electrode Porosity and Composition Engineering
- 2018
-
In: Angewandte Chemie International Edition. - : Wiley. - 1433-7851 .- 1521-3773. ; 57:38, s. 12360-12364
-
Journal article (peer-reviewed)abstract
- Ammonia, a key precursor for fertilizer production, convenient hydrogen carrier, and emerging clean fuel, plays a pivotal role in sustaining life on Earth. Currently, the main route for NH3 synthesis is by the heterogeneous catalytic Haber-Bosch process (N-2+ 3H(2) -> 2NH(3)), which proceeds under extreme conditions of temperature and pressure with a very large carbon footprint. Herein we report that a pristine nitrogen-doped nanoporous graphitic carbon membrane (NCM) can electrochemically convert N-2 into NH3 in an acidic aqueous solution under ambient conditions. The Faradaic efficiency and rate of production of NH3 on the NCM electrode reach 5.2% and 0.08 gm(-2) h(-1), respectively. Functionalization of the NCM with Au nanoparticles dramatically enhances these performance metrics to 22% and 0.36 gm(-2) h(-1), respectively. As this system offers the potential to be scaled to industrial levels it is highly likely that it might displace the century-old Haber-Bosch process.
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| 33. |
- Wang, Qian, et al.
(author)
-
Annealing of grain-like poly (vinylidene fluoride-trifluoroethylene) membranes with a single-crystalline electroactive phase and high anti-fouling activity
- 2022
-
In: Journal of Membrane Science. - : Elsevier. - 0376-7388 .- 1873-3123. ; 644
-
Journal article (peer-reviewed)abstract
- Electroactive membranes are attracting attention due to their piezo-, pyro-, and ferro-electric properties. Here we report the fabrication of electroactive membranes from poly(vinylidene fluoride-trifluoroethylene) P(VDF-TrFE), i.e. co-polymers of vinylidene fluoride and trifluoroethylene. A new P(VDF-TrFE)/Polyvinylpyrrolidone (PVP)/Dimethylacetamide (DMAc)/water system was used to tailor the membranes’ structure. Since hot treatment in the air could induce defect on membrane structure (i.e., fracture, shrinkage, and rolling), the annealing was conducted in the glycerin. Thanks to the high boiling point and moderate surface tension of glycerin, the integrity of P(VDF-TrFE) membranes was preserved during the annealing process. X-ray diffraction, Fourier transform infrared spectroscopy, differential scanning calorimetry, and scanning electron microscopy experiments revealed that the relative abundance of the β–crystalline phase increased with the annealing temperature when the latter was above the Curie temperature. P(VDF-TrFE) membranes annealed at 130 °C exhibited high crystallinity with grain-like surface, which resulted from multiple stacks of edge-on lamellae, and possessed excellent physicochemical properties of filtration. The anti-fouling performance of pristine and annealed P(VDF-TrFE) membranes was tested by dead-end filtration with a 13.5 mg/L humic acid (HA) solution. Annealed P(VDF-TrFE) membranes achieved greater fluxes and had superior anti-fouling properties, which was attributed to the weaker hydrophobic attraction between HA and the aligned β–phase crystals. This work provides a facile method for designing highly crystalline P(VDF-TrFE) membranes with potential applications in filtration systems, smart wearable devices, and medicine.
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| 34. |
- Wen-Yu, Fang, et al.
(author)
-
Elastic constants, electronic structures and thermal conductivity of monolayer XO2 (X = Ni, Pd, Pt)
- 2021
-
In: Wuli xuebao. - : Chinese Physical Society and Institute of Physics, Chinese Academy of Sciences. - 1000-3290. ; 70:24
-
Journal article (peer-reviewed)abstract
- Based on the first-principles calculations, the stability, elastic constants, electronic structure, and lattice thermal conductivity of monolayer XO2 (X = Ni, Pd, Pt) are investigated in this work. The results show that XO2 (X = Ni, Pd, Pt) have mechanical and dynamic stability at the same time. In addition, the Young's modulus of monolayer NiO2, PdO2 and PtO2 are 124.69 N.m(-1), 103.31 N.m(-1) and 116.51 N.m(-1), Poisson's ratio of monolayer NiO2, PdO2 and PtO2 are 0.25, 0.24 and 0.27, respectively, and each of them possesses high isotropy. The band structures show that monolayer XO2 (X = Ni, Pd, Pt) are indirect band-gap semiconductors with energy gap of 2.95 eV, 3.00 eV and 3.34 eV, respectively, and the energy levels near the valence band maximum and conduction band minimum are mainly composed of Ni-3d/Pd-4d/Pt-5d and O-2p orbital electrons. Based on deformation potential theory, the carrier mobility of each monolayer is calculated, and the results show that the effective mass and deformation potential of monolayer XO2 (X = Ni, Pd, Pt) along the armchair and zigzag directions show obvious anisotropy, and the highest electron and hole mobility are 13707.96 and 53.25 cm(2) .V-1.s(-1), 1288.12 and 19.18 cm(2).V-1.s(-1), and 404.71 and 270.60 cm(2) .V-1.s(-1) for NiO2, PdO(2 )and PtO2, respectively. Furthermore, the lattice thermal conductivity of monolayer XO2 (X = Ni, Pd, Pt) at 300 K are 53.55 W.m(-1).K-1, 19.06 W.m(-1).K-1 and 17.43 W.m(-1).K-1, respectively. These properties indicate that monolayer XO2 (X = Ni, Pd, Pt) have potential applications in nanometer electronic materials and thermal conductivity devices.
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| 35. |
- Wu, Yue, et al.
(author)
-
Photoswitching between black and colourless spectra exhibits resettable spatiotemporal logic
- 2016
-
In: Materials Horizons. - : Royal Society of Chemistry. - 2051-6347 .- 2051-6355. ; 3:2, s. 124-129
-
Journal article (peer-reviewed)abstract
- Logic is the key to computing. Traditionally, logic devices have been fabricated by the top-down approach, whose dimensions are drastically limited. The ultimate goal is to use molecular tailorability to design logics using the "bottom-up'' approach. Here we report an unprecedented photochromic molecule that undergoes unimolecular logic switching when excited anywhere in the entire UV-visible spectrum, thus a bottom-up, all-photonic, molecular logic gate. Specifically, these molecular photonic logics embedded in the polymer thin films function as the "AND'' or "OR'' gate at different temporal responses. To achieve high information-processing density, moreover, a ternary flip-flap-flop gate is realized in the molecular logic because the fact that this photochromic molecule can be photoswitched anywhere in its UV-vis spectrum enabled three different lasers (532, 473, and 561 nm) as the inputs to deliver the complex logic optical outputs.
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| 36. |
- Xie, Zi Kang, et al.
(author)
-
Electron scale coherent structure as micro accelerator in the Earth's magnetosheath
- 2024
-
In: Nature Communications. - : Springer Nature. - 2041-1723. ; 15:1, s. 886-
-
Journal article (peer-reviewed)abstract
- Turbulent energy dissipation is a fundamental process in plasma physics that has not been settled. It is generally believed that the turbulent energy is dissipated at electron scales leading to electron energization in magnetized plasmas. Here, we propose a micro accelerator which could transform electrons from isotropic distribution to trapped, and then to stream (Strahl) distribution. From the MMS observations of an electron-scale coherent structure in the dayside magnetosheath, we identify an electron flux enhancement region in this structure collocated with an increase of magnetic field strength, which is also closely associated with a non-zero parallel electric field. We propose a trapping model considering a field-aligned electric potential together with the mirror force. The results are consistent with the observed electron fluxes from ~50 eV to ~200 eV. It further demonstrates that bidirectional electron jets can be formed by the hourglass-like magnetic configuration of the structure.
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| 37. |
- Xu, Yue, et al.
(author)
-
Pyrrolylmethylene Appended Corrorin: Peripheral Coordination and Transformation to Pyridyl Incorporated Hemiporphycene Analogue
- 2023
-
In: Organic Letters. - : AMER CHEMICAL SOC. - 1523-7060 .- 1523-7052. ; 25:10, s. 1793-1798
-
Journal article (peer-reviewed)abstract
- A pyrrolylmethylene appended corrorin 1 was synthesized and coordinated with [Rh(CO)2Cl]2 to afford 1-Rh with unique RhI-eta 2-CC bonding in addition to the coordination of the dipyrrin-like unit and a carbonyl ligand. Further oxidation of 1 afforded 2, exhibiting a hydrocorrorinone core, and it can be further transformed into pyrrolo[3,2c]pyridine incorporated hemiporphycene analogue 3 upon treatment with HOAc. The side chain modifies the reactivity of corrorin and effectively tunes the NIR absorption of the resulting porphyrinoids.
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| 38. |
- Yang, Chen, 1993-, et al.
(author)
-
Nanofibrous Porous Organic Polymers and Their Derivatives : From Synthesis to Applications
- 2024
-
In: Advanced Science. - 2198-3844.
-
Research review (peer-reviewed)abstract
- Engineering porous organic polymers (POPs) into 1D morphology holds significant promise for diverse applications due to their exceptional processability and increased surface contact for enhanced interactions with guest molecules. This article reviews the latest developments in nanofibrous POPs and their derivatives, encompassing porous organic polymer nanofibers, their composites, and POPs-derived carbon nanofibers. The review delves into the design and fabrication strategies, elucidates the formation mechanisms, explores their functional attributes, and highlights promising applications. The first section systematically outlines two primary fabrication approaches of nanofibrous POPs, i.e., direct bulk synthesis and electrospinning technology. Both routes are discussed and compared in terms of template utilization and post-treatments. Next, performance of nanofibrous POPs and their derivatives are reviewed for applications including water treatment, water/oil separation, gas adsorption, energy storage, heterogeneous catalysis, microwave absorption, and biomedical systems. Finally, highlighting existent challenges and offering future prospects of nanofibrous POPs and their derivatives are concluded.
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| 39. |
- Yang, Jianming, et al.
(author)
-
Comprehensive understanding of heat-induced degradation of triple-cation mixed halide perovskite for a robust solar cell
- 2018
-
In: Nano Energy. - : ELSEVIER SCIENCE BV. - 2211-2855 .- 2211-3282. ; 54, s. 218-226
-
Journal article (peer-reviewed)abstract
- The triple-cation mixed halide perovskite Cs-0.05(MA(0.17)FA(0.83))(0.95)Pb(I0.83Br0.17)(3) emerges as one of the most promising candidates for photovoltaics due to superior optoelectronic properties, but the thermal stability is still a major challenge for the viability of perovskite solar cells towards commercialization. Herein, we firstly explore the thermal response of the photovoltaic performances to access device physical changes. It is shown that the efficiency loss originates from decreased charge mobility, increased trap density and generation of PbI2 charge recombination centers near the interface. In-depth analysis of evolutions in morphology, chemical composition, dynamic and electronic structure of the perovskite layer at the nanometer scales indicates that it is initial dangling bonds and vacancies on the imperfect surfaces decrease the activation energy and cause the perovskite decomposition in a layer-by-layer pathway sequentially from the film surface to bulk. Based on the results, a strategy of surface passivation to improve the thermal stability is demonstrated and discussed. This work for the first time provides insights into the physical and chemical change of such triple-cation perovskite and indicates that more effort should be invested in surface treatment for enhancing perovskite device stability.
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| 40. |
- You, Q. L., et al.
(author)
-
Recent frontiers of climate changes in East Asia at global warming of 1.5 degrees C and 2 degrees C
- 2022
-
In: npj Climate and Atmospheric Science. - : Springer Science and Business Media LLC. - 2397-3722. ; 5:1
-
Journal article (peer-reviewed)abstract
- East Asia is undergoing significant climate changes and these changes are likely to grow in the future. It is urgent to characterize both the mechanisms controlling climate and the response of the East Asian climate system at global warming of 1.5 and 2 degrees C above pre-industrial levels (GW1.5 and GW2 hereafter). This study reviews recent studies on East Asian climate change at GW1.5 and GW2. The intensity and variability of the East Asian summer monsoon are expected to increase modestly, accompanied by an enhancement of water vapor transport. Other expected changes include the intensification of the Western Pacific Subtropical High and an intensified and southward shift of the East Asian jet, while the intensity of the East Asian winter monsoon is projected to reduce with high uncertainty. Meanwhile, the frequency of ENSO may increase in a warming world with great uncertainty. Significant warming and wetting occur in East Asia, with more pronounced intensity, frequency, and duration of climate extremes at GW2 than that at GW1.5. The fine structure of regional climate changes and the presence and location of various warming hotspots, however, show substantial divergence among different model simulations. Furthermore, the Asian climate responses can differ substantially between the transient and stabilized GW1.5 and GW2, which has important implications for emission policies. Thus, to better plan effective mitigation and adaptation activities, further research including an in-depth exploration of the divergent responses in transient versus stabilized scenarios, the quantification of future projection uncertainties, and improvements of the methods to reduce model uncertainties are required.
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| 41. |
- Yue, J., et al.
(author)
-
Simulation research on fatigue crack propagation behavior in bulb stiffeners in ship structural details
- 2017
-
In: Proceedings of the International Offshore and Polar Engineering Conference. - 1098-6189 .- 1555-1792. - 9781880653975 ; , s. 942-948
-
Conference paper (peer-reviewed)abstract
- Fatigue crack propagation behavior in bulb stiffeners, which are widely used in ship structures, is indispensable information for ship structures' fatigue life prediction. This paper aims to provide reasonable simulation process for the fatigue cracks propagated in bulb stiffeners based on the Finite Element Method (FEM) and eXtended Finite Element Method (XFEM) by using FRANC 3D and ABAQUS respectively. In order to evaluate the simulations, the shape of a three dimensional surface crack in full-scale bulb stiffener was measured and estimated through a full-scale fatigue test on a typical ship structure detail. According to the comparisons of the crack propagation path between the experiment and simulation results, the simulation results were verified to be reasonable and acceptable. Moreover, through analyzing the crack propagation behavior in bulb section, the fatigue failure criterion of bulb stiffeners was investigated.
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| 42. |
- Zhang, H., et al.
(author)
-
Application Prospects and Microstructural Features in Laser-Induced Rapidly Solidified High-Entropy Alloys
- 2014
-
In: JOM. - : Springer Science and Business Media LLC. - 1543-1851 .- 1047-4838. ; 66:10, s. 2057-2066
-
Research review (peer-reviewed)abstract
- Recently, high-entropy alloys (HEAs) have attracted much interest in the materials community, as they offer massive opportunities to observe new phenomena, explore new structure, and develop new materials. Particularly, it is attractive to prepare high-performance HEA coatings by laser-induced rapid solidification, which can be formed on the surface of components and parts in a variety of sizes and shapes with a lower cost in comparison with those bulk material fabrication methods. From the technical point of view, laser-induced rapid solidification could hamper the compositional segregation, improve the solubility in solid-solution phases, and lead to the strengthening effect by the grain refinement. This article reviews the recent work on the typical microstructural features and the mechanical and chemical properties in laser-induced rapidly solidified HEAs, and these data are compared with conventional Co- and Ni-based alloy coatings. The article concludes with suggestions for future research and development in HEAs, from considerations of their characteristic properties.
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| 43. |
- Zhang, Pan, et al.
(author)
-
Nanochannel-Based Transport in an Interfacial Memristor Can Emulate the Analog Weight Modulation of Synapses
- 2019
-
In: Nano letters (Print). - : AMER CHEMICAL SOC. - 1530-6984 .- 1530-6992. ; 19:7, s. 4279-4286
-
Journal article (peer-reviewed)abstract
- By exploiting novel transport phenomena such as ion selectivity at the nanoscale, it has been shown that nanochannel systems can exhibit electrically controllable conductance, suggesting their potential use in neuromorphic devices. However, several critical features of biological synapses, particularly their conductance modulation, which is both memorable and gradual, have rarely been reported in these types of systems due to the fast flow property of typical inorganic electrolytes. In this work, we demonstrate that electrically manipulating the nanochannel conductance can result in nonvolatile conductance tuning capable of mimicking the analog behavior of synapses by introducing a room-temperature ionic liquid (IL) and a KCl solution into the two ends of a nanochannel system. The gradual conductance-tuning mechanism is identified through fluorescence measurements as the voltage-induced movement of the interface between the immiscible IL and KCl solution, while the successful memorization of the conductance tuning is ascribed to the large viscosity of the IL. We applied a nanochannel-based synapse to a handwritten digit-recognition task, reaching an accuracy of 94%. These promising results provide important guidance for the future design of nanochannel-based neuromorphic devices and the manipulation of nanochannel transport for computing.
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| 44. |
- Zhang, Zhonggang, et al.
(author)
-
Three-Dimensional CFD Modeling of Transport Phenomena in a Cross-Flow Anode-Supported Planar SOFC
- 2014
-
In: Energies. - : MDPI AG. - 1996-1073. ; 7:1, s. 80-98
-
Journal article (peer-reviewed)abstract
- In this study, a three-dimensional computational fluid dynamics (CFD) model is developed for an anode-supported planar SOFC from the Chinese Academy of Science Ningbo Institute of Material Technology and Engineering (NIMTE). The simulation results of the developed model are in good agreement with the experimental data obtained under the same conditions. With the simulation results, the distribution of temperature, flow velocity and the gas concentrations through the cell components and gas channels is presented and discussed. Potential and current density distributions in the cell and overall fuel utilization are also presented. It is also found that the temperature gradients exist along the length of the cell, and the maximum value of the temperature for the cross-flow is at the outlet region of the cell. The distribution of the current density is uneven, and the maximum current density is located at the interfaces between the channels, ribs and the electrodes, the maximum current density result in a large over-potential and heat source in the electrodes, which is harmful to the overall performance and working lifespan of the fuel cells. A new type of flow structure should be developed to make the current flow be more evenly distributed and promote most of the TPB areas to take part in the electrochemical reactions.
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| 45. |
- Zhang, Zhonggang, et al.
(author)
-
Three-dimensional CFD modeling of transport phenomena in anode-supported planar SOFCs
- 2014
-
In: Heat and Mass Transfer. - : Springer Science and Business Media LLC. - 1432-1181 .- 0947-7411. ; 50:11, s. 1575-1586
-
Journal article (peer-reviewed)abstract
- In this study, a three-dimensional computational fluid dynamics model has been developed for an anode-supported planar SOFC. The conservation equations of mass, momentum, species/charges and thermal energy are solved by finite volume method for a complete unit cell consisting of 13 parallel channels in both anode and cathode. The simulation results of the developed model are well in agreement with the experimental data obtained at same conditions. In this study, the co-flow arrangement with hydrogen utilization of 60 % and operating voltage of 0.7 V is used as the base case, and compared with the counter-flow arrangement. The predicted results reveals that the maximum temperature obtained in the counter-flow arrangement is about 10 A degrees C lower than that of co-flow, but the counter-flow arrangement has a higher temperature gradient between the respective anodes and cathodes in a cross-section normal to the main flow direction, especially in the air inlet region of the cell (x = 0.04 m),which is very harmful to the lifetime of materials. The current density is very unevenly distributed along and normal to the flow direction for both the co- and counter-flow arrangements, and the maximum values occur at junctions of the electrodes, channels and ribs, which causes higher over-potentials and ohmic heating.
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| 46. |
- Zhang, Zhonggang, et al.
(author)
-
Three-dimensional CFD modeling of transport phenomena in multi-channel anode-supported planar SOFCs
- 2015
-
In: International Journal of Heat and Mass Transfer. - : Elsevier BV. - 0017-9310. ; 84, s. 942-954
-
Journal article (peer-reviewed)abstract
- In this study, a three-dimensional computational fluid dynamics (CFD) model is developed and applied for anode-supported planar SOFC involving multi-channels. The developed model is first validated in agreement with the experimental data obtained at same conditions. Three different flow arrangements (co-, counter- and cross-flow) are simulated and compared in terms of cell overall performance and various transport phenomena occurred inside the SOFC single cell functional components. Local distribution of temperature, mass flow rate, current density, gas concentrations of reactants and products in both fuel and air sides under different flow arrangements is predicted and presented. It is found that the co-flow and counter-flow arrangements have a better performance than that of the cross-flow arrangement at the same operating conditions. It is also found that the temperature for the three flow arrangements is unevenly distributed and the significant temperature gradients exist along the length of the cell. The mass flow rate of fuel at the inlet of each channel is uniform, however its difference between the side channel and the channel at the center is increasing along the fuel flow direction, which reaches a maximum value at the outlet region. It is also predicted that the maximum current density is located at the interfaces between the channels, ribs and the electrodes resulting in a large over-potential and a heat source in the electrodes, which is harmful to the cell overall performance and working life time. (C) 2015 Elsevier Ltd. All rights reserved.
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| 47. |
- Zhao, Zeng-Ren, et al.
(author)
-
Nup88 mRNA overexpression in colorectal cancers and relationship with p53
- 2010
-
In: CANCER BIOMARKERS. - : IOS Press. - 1574-0153. ; 8:2, s. 73-80
-
Journal article (peer-reviewed)abstract
- Objectives: We measured nucleoporin 88 (Nup88) mRNA expression in primary colorectal cancers to investigate its relationship with clinicopathological features and p53. Methods: The primary cancer tissues, adjacent noncancerous tissues and the proximal and distant margins of normal mucosa were collected from 73 colorectal cancer patients during surgery. Nup88 mRNA expression was measured on these fresh specimens and on colon cell lines HCT-116 (P53+/+) and HCT-116 (P53-/-) by RT-PCR while p53 mRNA and beta-actin as controls. Nup88 and p53 protein expression were then immunohistochemistrically examined in other 25 colorectal cancers specimens paraffin embedded and formalin fixed. Results: Nup88 expression was higher in primary cancer tissues than in adjacent noncancerous tissues, and in the proximal and distant margins of normal mucosa. Overexpression of Nup88 mRNA was statistically associated with TNM stage (P = 0.044), lymphatic metastasis (P = 0.022), and cancer location (P = 0.036), while not related to gender, age of patients and histological type, infiltration depth, and differentiation of cancers. The expression of Nup88 mRNA in the HCT-116 (P53-/-) cell line was not significantly different from expression in the HCT-116 (P53+/+) cell line. And there was no correlation between Nup88 and p53 protein expression (r = 0.632, P = 0.368). Conclusions: Nup88 mRNA was overexpressed in colorectal cancers and the overexpression was associated with cancer development and aggressiveness. Nup88 might be regard as essential contributor to nodal metastagenicity of colorectal cancer.
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| 48. |
- Zhao, Zeng-Ren, et al.
(author)
-
Significance of mRNA and Protein Expression of MAC30 in Progression of Colorectal Cancer
- 2011
-
In: Chemotherapy. - Basel : Karger AG. - 0009-3157 .- 1421-9794. ; 57:5, s. 394-401
-
Journal article (peer-reviewed)abstract
- Background: Meningioma-associated protein (MAC30), first described to be overexpressed in meningiomas, exhibits altered expression in certain human tumors. The aim of our study was to investigate the expression of MAC30 mRNA and its correlation with clinicopathological variables in human colorectal cancer (CRC). Methods: MAC30 mRNA expression was first examined in 55 CRCs, along with the samples from the matched distant normal and adjacent noncancerous tissue by RT-PCR, further verified in 18 CRCs by quantitative RT-PCR. MAC30 protein expression was detected by Western blot in 10 CRCs, and DNA sequencing was performed in 1 case of the paired CRC and the matched noncancerous specimen. MAC30 mRNA expression in two colon cancer cell lines, HCT-116(p53-/-) and HCT-116(p53+/+), was detected by quantitative RT-PCR. Results: The mRNA expression of MAC30 was increased in CRC when compared with distant normal (p < 0.01) and adjacent noncancerous mucosa (p < 0.01). The mean value of MAC30 mRNA expression in the tumor located in the colon was higher than in the rectum (0.677 +/- 0.419 vs. 0.412 +/- 0.162, p = 0.005). As the tumor penetrated the wall of the colon/rectum, MAC30 mRNA expression notably increased in tumors with T3+T4 stage compared to tumors with T1+T2 stage (0.571 +/- 0.364 vs. 0.404 +/- 0.115, p = 0.014). MAC30 protein expression in CRCs was also remarkably elevated compared to the adjacent noncancerous mucosa. There was no mutation in the coding region of the MAC30 gene either in CRC or in the noncancerous mucosa. mRNA expression of p53 was notably decreased in HCT-116(p53-/-) compared to HCT-116(p53+/+), while MAC30 did not vary greatly. Conclusion: The overexpression of MAC30 might be involved in the development and aggressiveness of CRCs, especially in the colon.
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| 49. |
- Zhou, X., et al.
(author)
-
Novel Evaluation Method to Determine the Mixing Time in a Ladle Refining Process
- 2022
-
In: Metallurgical and materials transactions. B, process metallurgy and materials processing science. - : Springer Nature. - 1073-5615 .- 1543-1916. ; 53:6, s. 4114-4123
-
Journal article (peer-reviewed)abstract
- Mixing plays a key role in mass and heat transfer, as well as chemical reactions in various vessels involving agitation. Several studies have confirmed that the mixing time obtained from several monitor locations cannot reflect the mixing time for the whole bath because stirring situation in different locations is variable due to the change of operation schemes. It is proved that some zones with inefficient stirring cannot be monitored by applying a limited amount of probes in physical and mathematical models. This study provides a novel approach to quantify mixing time evaluation considering the tracer variation for the whole bath using a mathematical model. It was found that the mixing time obtained by considering the whole bath is more representative than that of the probe monitor method. Compared with the traditional probe method, about 50 to 70 pct longer mixing times were obtained for different operations by applying the volume track method. In addition, the volume integral of the concerned variable for the whole bath is more representative to determine the developed flow compared to the points monitoring method for a transient simulation.
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