| 1. |
- Abelev, Betty, et al.
(författare)
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Underlying Event measurements in pp collisions at root s=0.9 and 7 TeV with the ALICE experiment at the LHC
- 2012
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Ingår i: Journal of High Energy Physics. - 1029-8479. ; :7
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Tidskriftsartikel (refereegranskat)abstract
- We present measurements of Underlying Event observables in pp collisions at root s = 0 : 9 and 7 TeV. The analysis is performed as a function of the highest charged-particle transverse momentum p(T),L-T in the event. Different regions are defined with respect to the azimuthal direction of the leading (highest transverse momentum) track: Toward, Transverse and Away. The Toward and Away regions collect the fragmentation products of the hardest partonic interaction. The Transverse region is expected to be most sensitive to the Underlying Event activity. The study is performed with charged particles above three different p(T) thresholds: 0.15, 0.5 and 1.0 GeV/c. In the Transverse region we observe an increase in the multiplicity of a factor 2-3 between the lower and higher collision energies, depending on the track p(T) threshold considered. Data are compared to PYTHIA 6.4, PYTHIA 8.1 and PHOJET. On average, all models considered underestimate the multiplicity and summed p(T) in the Transverse region by about 10-30%.
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| 2. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 3. |
- Abelev, Betty, et al.
(författare)
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Long-range angular correlations on the near and away side in p-Pb collisions at root S-NN=5.02 TeV
- 2013
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Ingår i: Physics Letters. Section B: Nuclear, Elementary Particle and High-Energy Physics. - : Elsevier BV. - 0370-2693. ; 719:1-3, s. 29-41
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Tidskriftsartikel (refereegranskat)abstract
- Angular correlations between charged trigger and associated particles are measured by the ALICE detector in p-Pb collisions at a nucleon-nucleon centre-of-mass energy of 5.02 TeV for transverse momentum ranges within 0.5 < P-T,P-assoc < P-T,P-trig < 4 GeV/c. The correlations are measured over two units of pseudorapidity and full azimuthal angle in different intervals of event multiplicity, and expressed as associated yield per trigger particle. Two long-range ridge-like structures, one on the near side and one on the away side, are observed when the per-trigger yield obtained in low-multiplicity events is subtracted from the one in high-multiplicity events. The excess on the near-side is qualitatively similar to that recently reported by the CMS Collaboration, while the excess on the away-side is reported for the first time. The two-ridge structure projected onto azimuthal angle is quantified with the second and third Fourier coefficients as well as by near-side and away-side yields and widths. The yields on the near side and on the away side are equal within the uncertainties for all studied event multiplicity and p(T) bins, and the widths show no significant evolution with event multiplicity or p(T). These findings suggest that the near-side ridge is accompanied by an essentially identical away-side ridge. (c) 2013 CERN. Published by Elsevier B.V. All rights reserved.
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| 4. |
- Abelev, Betty, et al.
(författare)
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Measurement of prompt J/psi and beauty hadron production cross sections at mid-rapidity in pp collisions at root s=7 TeV
- 2012
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Ingår i: Journal of High Energy Physics. - 1029-8479. ; :11
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Tidskriftsartikel (refereegranskat)abstract
- The ALICE experiment at the LHC has studied J/psi production at mid-rapidity in pp collisions at root s = 7 TeV through its electron pair decay on a data sample corresponding to an integrated luminosity L-int = 5.6 nb(-1). The fraction of J/psi from the decay of long-lived beauty hadrons was determined for J/psi candidates with transverse momentum p(t) > 1,3 GeV/c and rapidity vertical bar y vertical bar < 0.9. The cross section for prompt J/psi mesons, i.e. directly produced J/psi and prompt decays of heavier charmonium states such as the psi(2S) and chi(c) resonances, is sigma(prompt J/psi) (p(t) > 1.3 GeV/c, vertical bar y vertical bar < 0.9) = 8.3 +/- 0.8(stat.) +/- 1.1 (syst.)(-1.4)(+1.5) (syst. pol.) mu b. The cross section for the production of b-hadrons decaying to J/psi with p(t) > 1.3 GeV/c and vertical bar y vertical bar < 0.9 is a sigma(J/psi <- hB) (p(t) > 1.3 GeV/c, vertical bar y vertical bar < 0.9) = 1.46 +/- 0.38 (stat.)(-0.32)(+0.26) (syst.) mu b. The results are compared to QCD model predictions. The shape of the p(t) and y distributions of b-quarks predicted by perturbative QCD model calculations are used to extrapolate the measured cross section to derive the b (b) over bar pair total cross section and d sigma/dy at mid-rapidity.
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| 5. |
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| 6. |
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| 7. |
- Krasnoselskikh, Vladimir, et al.
(författare)
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ICARUS : in-situ studies of the solar corona beyond Parker Solar Probe and Solar Orbiter
- 2022
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Ingår i: Experimental astronomy. - : Springer Nature. - 0922-6435 .- 1572-9508. ; 54:2-3, s. 277-315
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Tidskriftsartikel (refereegranskat)abstract
- The primary scientific goal of ICARUS (Investigation of Coronal AcceleRation and heating of solar wind Up to the Sun), a mother-daughter satellite mission, proposed in response to the ESA “Voyage 2050” Call, will be to determine how the magnetic field and plasma dynamics in the outer solar atmosphere give rise to the corona, the solar wind, and the entire heliosphere. Reaching this goal will be a Rosetta Stone step, with results that are broadly applicable within the fields of space plasma physics and astrophysics. Within ESA’s Cosmic Vision roadmap, these science goals address Theme 2: “How does the Solar System work?” by investigating basic processes occurring “From the Sun to the edge of the Solar System”. ICARUS will not only advance our understanding of the plasma environment around our Sun, but also of the numerous magnetically active stars with hot plasma coronae. ICARUS I will perform the first direct in situ measurements of electromagnetic fields, particle acceleration, wave activity, energy distribution, and flows directly in the regions in which the solar wind emerges from the coronal plasma. ICARUS I will have a perihelion altitude of 1 solar radius and will cross the region where the major energy deposition occurs. The polar orbit of ICARUS I will enable crossing the regions where both the fast and slow winds are generated. It will probe the local characteristics of the plasma and provide unique information about the physical processes involved in the creation of the solar wind. ICARUS II will observe this region using remote-sensing instruments, providing simultaneous, contextual information about regions crossed by ICARUS I and the solar atmosphere below as observed by solar telescopes. It will thus provide bridges for understanding the magnetic links between the heliosphere and the solar atmosphere. Such information is crucial to our understanding of the plasma physics and electrodynamics of the solar atmosphere. ICARUS II will also play a very important relay role, enabling the radio-link with ICARUS I. It will receive, collect, and store information transmitted from ICARUS I during its closest approach to the Sun. It will also perform preliminary data processing before transmitting it to Earth. Performing such unique in situ observations in the area where presumably hazardous solar energetic particles are energized, ICARUS will provide fundamental advances in our capabilities to monitor and forecast the space radiation environment. Therefore, the results from the ICARUS mission will be extremely crucial for future space explorations, especially for long-term crewed space missions.
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| 8. |
- Nilsson, Hans, et al.
(författare)
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Birth of a comet magnetosphere : A spring of water ions
- 2015
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 347:6220
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Tidskriftsartikel (refereegranskat)abstract
- The Rosetta mission shall accompany comet 67P/Churyumov-Gerasimenko from a heliocentric distance of >3.6 astronomical units through perihelion passage at 1.25 astronomical units, spanning low and maximum activity levels. Initially, the solar wind permeates the thin comet atmosphere formed from sublimation, until the size and plasma pressure of the ionized atmosphere define its boundaries: A magnetosphere is born. Using the Rosetta Plasma Consortium ion composition analyzer, we trace the evolution from the first detection of water ions to when the atmosphere begins repelling the solar wind (~3.3 astronomical units), and we report the spatial structure of this early interaction. The near-comet water population comprises accelerated ions (
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| 9. |
- Arridge, Christopher S., et al.
(författare)
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Uranus Pathfinder : exploring the origins and evolution of Ice Giant planets
- 2012
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Ingår i: Experimental astronomy. - : Springer Science and Business Media LLC. - 0922-6435 .- 1572-9508. ; 33:2-3, s. 753-791
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Tidskriftsartikel (refereegranskat)abstract
- The "Ice Giants" Uranus and Neptune are a different class of planet compared to Jupiter and Saturn. Studying these objects is important for furthering our understanding of the formation and evolution of the planets, and unravelling the fundamental physical and chemical processes in the Solar System. The importance of filling these gaps in our knowledge of the Solar System is particularly acute when trying to apply our understanding to the numerous planetary systems that have been discovered around other stars. The Uranus Pathfinder (UP) mission thus represents the quintessential aspects of the objectives of the European planetary community as expressed in ESA's Cosmic Vision 2015-2025. UP was proposed to the European Space Agency's M3 call for medium-class missions in 2010 and proposed to be the first orbiter of an Ice Giant planet. As the most accessible Ice Giant within the M-class mission envelope Uranus was identified as the mission target. Although not selected for this call the UP mission concept provides a baseline framework for the exploration of Uranus with existing low-cost platforms and underlines the need to develop power sources suitable for the outer Solar System. The UP science case is based around exploring the origins, evolution, and processes at work in Ice Giant planetary systems. Three broad themes were identified: (1) Uranus as an Ice Giant, (2) An Ice Giant planetary system, and (3) An asymmetric magnetosphere. Due to the long interplanetary transfer from Earth to Uranus a significant cruise-phase science theme was also developed. The UP mission concept calls for the use of a Mars Express/Rosetta-type platform to launch on a Soyuz-Fregat in 2021 and entering into an eccentric polar orbit around Uranus in the 2036-2037 timeframe. The science payload has a strong heritage in Europe and beyond and requires no significant technology developments.
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| 10. |
- Batalha-Filho, Henrique, et al.
(författare)
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Phylogeny and historical biogeography of gnateaters (Passeriformes, Conopophagidae) in the South America forests.
- 2014
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Ingår i: Molecular Phylogenetics and Evolution. - : Elsevier BV. - 1055-7903 .- 1095-9513. ; 79, s. 422-432
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Tidskriftsartikel (refereegranskat)abstract
- We inferred the phylogenetic relationships, divergence time and biogeography of Conopophagidae (gnateaters) based on sequence data of mitochondrial genes (ND2, ND3 and cytb) and nuclear introns (TGFB2 and G3PDH) from 45 tissue samples (43 Conopophaga and 2 Pittasoma) representing all currently recognized species of the family and the majority of subspecies. Phylogenetic relationships were estimated by maximum likelihood and Bayesian inference. Divergence time estimates were obtained based on a Bayesian relaxed clock model. These chronograms were used to calculate diversification rates and reconstruct ancestral areas of the genus Conopophaga. The phylogenetic analyses support the reciprocal monophyly of the two genera, Conopophaga and Pittasoma. All species were monophyletic with the exception of C. lineata, as C. lineata cearae did not cluster with the other two C. lineata subspecies. Divergence time estimates for Conopophagidae suggested that diversification took place during the Neogene, and that the diversification rate within Conopophaga clade was highest in the late Miocene, followed by a slower diversification rate, suggesting a diversity-dependent pattern. Our analyses of the diversification of family Conopophagidae provided a scenario for evolution in Terra Firme forest across tropical South America. The spatio-temporal pattern suggests that Conopophaga originated in the Brazilian Shield and that a complex sequence of events possibly related to the Andean uplift and infilling of former sedimentation basins and erosion cycles shaped the current distribution and diversity of this genus.
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| 11. |
- Behar, Etienne, et al.
(författare)
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Menura : A code for simulating the interaction between a turbulent solar wind and solar system bodies
- 2022
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Ingår i: Annales Geophysicae. - : Copernicus GmbH. - 0992-7689 .- 1432-0576. ; 40:3, s. 281-297
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Tidskriftsartikel (refereegranskat)abstract
- Despite the close relationship between planetary science and plasma physics, few advanced numerical tools allow bridging the two topics. The code Menura proposes a breakthrough towards the self-consistent modelling of these overlapping fields, in a novel two-step approach allowing for the global simulation of the interaction between a fully turbulent solar wind and various bodies of the solar system. This article introduces the new code and its two-step global algorithm, illustrated by a first example: the interaction between a turbulent solar wind and a comet.
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| 12. |
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| 13. |
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| 14. |
- Clergeot, Pierre-Henri, et al.
(författare)
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Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle : A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum
- 2019
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Ingår i: Genetics. - : Oxford University Press (OUP). - 0016-6731 .- 1943-2631. ; 211:3, s. 963-976
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Tidskriftsartikel (refereegranskat)abstract
- Many eukaryote species, including taxa such as fungi or algae, have a lifecycle with substantial haploid and diploid phases. A recent theoretical model predicts that such haploid-diploid lifecycles are stable over long evolutionary time scales when segregating deleterious mutations have stronger effects in homozygous diploids than in haploids and when they are partially recessive in heterozygous diploids. The model predicts that effective dominance-a measure that accounts for these two effects-should be close to 0.5 in these species. It also predicts that diploids should have higher fitness than haploids on average. However, an appropriate statistical framework to conjointly investigate these predictions is currently lacking. In this study, we derive a new quantitative genetic model to test these predictions using fitness data of two haploid parents and their diploid offspring, and genome-wide genetic distance between haploid parents. We apply this model to the root-rot basidiomycete fungus Heterobasidion parviporum-a species where the heterokaryotic (equivalent to the diploid) phase is longer than the homokaryotic (haploid) phase. We measured two fitness-related traits (mycelium growth rate and the ability to degrade wood) in both homokaryons and heterokaryons, and we used whole-genome sequencing to estimate nuclear genetic distance between parents. Possibly due to a lack of power, we did not find that deleterious mutations were recessive or more deleterious when expressed during the heterokaryotic phase. Using this model to compare effective dominance among haploid-diploid species where the relative importance of the two phases varies should help better understand the evolution of haploid-diploid life cycles.
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| 15. |
- Clergeot, Pierre-Henri, et al.
(författare)
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The corky root rot pathogen, Pyrenochaeta lycopersici manipulates tomato roots with molecules secreted early during their interaction
- 2012
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Ingår i: Acta Agriculturae Scandinavica - Section B. - : Informa UK Limited. - 0906-4710 .- 1651-1913. ; 62:4, s. 300-310
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Tidskriftsartikel (refereegranskat)abstract
- Corky root rot is a ubiquitous soil-borne disease of tomato caused by the pathogen Pyrenochaeta lycopersici. This filamentous fungus is found on the roots of many crops and can persist in the soil up to 15 years as microsclerotia. High prevalence of corky root rot can be partly explained by the endurance and the broad host range of P. lycopersici, but how this fungus can gain access to host roots is still poorly understood, as its competitive saprophytic ability is very low. We have combined microscopy and reporter gene techniques to investigate the tomato-P. lycopersici interaction in vitro, and discovered the pathogen secretes molecules that change the direction of root growth and induce cell necrosis specifically in the apical part of the root of tomato ( apex, elongation zone and beginning of the root hair zone). Moreover, we found that the fungus preferentially infects immature root cells that are sensitive to these secreted fungal molecules, whereas infection is blocked in mature and insensitive parts of the root. Our study sheds light on novel and important features of the biology of this pathogen, which could contribute to its fitness in the rhizosphere.
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| 16. |
- Clergeot, Pierre-Henri, et al.
(författare)
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The Corky Root Rot Pathogen Pyrenochaeta lycopersici Secretes a Proteinaceous Inducer of Cell Death Affecting Host Plants Differentially
- 2012
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Ingår i: Phytopathology. - 0031-949X .- 1943-7684. ; 102:9, s. 878-891
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Tidskriftsartikel (refereegranskat)abstract
- The corky root rot pathogen Pyrenochaeta lycopersici secretes a proteinaceous inducer of cell death affecting host plants differentially. Phytopathology 102:878-891. Pathogenic isolates of Pyrenochaeta lycopersici, the causal agent of corky root rot of tomato, secrete cell death in tomato 1 (CDiT1), a homodimeric protein of 35 kDa inducing cell death after infiltration into the leaf apoplast of tomato. CDiT1 was purified by fast protein liquid chromatography, characterized by mass spectrometry and cDNA cloning. Its activity was confirmed after infiltration of an affinity-purified recombinant fusion of the protein with a C-terminal polyhistidine tag. CDiT1 is highly expressed during tomato root infection compared with axenic culture, and has a putative ortholog in other pathogenic Pleosporales species producing proteinaceous toxins that contribute to virulence. Infiltration of CDiT1 into leaves of other plants susceptible to P lycopersici revealed that the protein affects them differentially. All varieties of cultivated tomato (Solanum lycopersicum) tested were more sensitive to CDiT1 than those of currant tomato (S. pimpinellifolium). Root infection assays showed that varieties of currant tomato are also significantly less prone to intracellular colonization of their root cells by hyphae of P. lycopersici than varieties of cultivated tomato. Therefore, secretion of this novel type of inducer of cell death during penetration of the fungus inside root cells might favor infection of host species that are highly sensitive to this molecule.
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| 17. |
- Deca, Jan, et al.
(författare)
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Building a Weakly Outgassing Comet from a Generalized Ohm's Law
- 2019
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Ingår i: Physical Review Letters. - : AMER PHYSICAL SOC. - 0031-9007 .- 1079-7114. ; 123:5
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Tidskriftsartikel (refereegranskat)abstract
- When a weakly outgassing comet is sufficiently close to the Sun, the formation of an ionized coma results in solar wind mass loading and magnetic field draping around its nucleus. Using a 3D fully kinetic approach, we distill the components of a generalized Ohm's law and the effective electron equation of state directly from the self-consistently simulated electron dynamics and identify the driving physics in the various regions of the cometary plasma environment. Using the example of space plasmas, in particular multispecies cometary plasmas, we show how the description for the complex kinetic electron dynamics can be simplified through a simple effective closure, and identify where an isotropic single-electron fluid Ohm's law approximation can be used, and where it fails.
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| 18. |
- Deca, Jan, et al.
(författare)
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Electron and Ion Dynamics of the Solar Wind Interaction with a Weakly Outgassing Comet
- 2017
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Ingår i: Physical Review Letters. - : American Physical Society. - 0031-9007 .- 1079-7114. ; 118:20
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Tidskriftsartikel (refereegranskat)abstract
- Using a 3D fully kinetic approach, we disentangle and explain the ion and electron dynamics of the solar wind interaction with a weakly outgassing comet. We show that, to first order, the dynamical interaction is representative of a four-fluid coupled system. We self-consistently simulate and identify the origin of the warm and suprathermal electron distributions observed by ESA's Rosetta mission to comet 67P/Churyumov-Gerasimenko and conclude that a detailed kinetic treatment of the electron dynamics is critical to fully capture the complex physics of mass-loading plasmas.
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| 19. |
- Divin, Andrey, et al.
(författare)
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A Fully Kinetic Perspective of Electron Acceleration around a Weakly Outgassing Comet
- 2020
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Ingår i: Astrophysical Journal Letters. - : IOP PUBLISHING LTD. - 2041-8205 .- 2041-8213. ; 889:2
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Tidskriftsartikel (refereegranskat)abstract
- The cometary mission Rosetta has shown the presence of higher-than-expected suprathermal electron fluxes. In this study, using 3D fully kinetic electromagnetic simulations of the interaction of the solar wind with a comet, we constrain the kinetic mechanism that is responsible for the bulk electron energization that creates the suprathermal distribution from the warm background of solar wind electrons. We identify and characterize the magnetic field-aligned ambipolar electric field that ensures quasi-neutrality and traps warm electrons. Solar wind electrons are accelerated to energies as high as 50-70 eV close to the comet nucleus without the need for wave-particle or turbulent heating mechanisms. We find that the accelerating potential controls the parallel electron temperature, total density, and (to a lesser degree) the perpendicular electron temperature and the magnetic field magnitude. Our self-consistent approach enables us to better understand the underlying plasma processes that govern the near-comet plasma environment.
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| 20. |
- Edberg, Niklas J. T., et al.
(författare)
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The Convective Electric Field Influence on the Cold Plasma and Diamagnetic Cavity of Comet 67P
- 2019
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Ingår i: Astronomical Journal. - : Institute of Physics (IOP). - 0004-6256 .- 1538-3881. ; 158:2
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Tidskriftsartikel (refereegranskat)abstract
- We studied the distribution of cold electrons (<1 eV) around comet 67P/Churyumov–Gerasimenko with respect to the solar wind convective electric field direction. The cold plasma was measured by the Langmuir Probe instrument and the direction of the convective electric field conv = − × was determined from magnetic field () measurements inside the coma combined with an assumption of a purely radial solar wind velocity . We found that the cold plasma is twice as likely to be observed when the convective electric field at Rosetta's position is directed toward the nucleus (in the − convhemisphere) compared to when it is away from the nucleus (in the + conv hemisphere). Similarly, the diamagnetic cavity, in which previous studies have shown that cold plasma is always present, was also found to be observed twice as often when in the − conv hemisphere, linking its existence circumstantially to the presence of cold electrons. The results are consistent with hybrid and Hall magnetohydrodynamic simulations as well as measurements of the ion distribution around the diamagnetic cavity.
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| 21. |
- Ezzedine, Jade A., et al.
(författare)
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Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging
- 2023
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Ingår i: Nature Communications. - 2041-1723. ; 14:1
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Tidskriftsartikel (refereegranskat)abstract
- Sanguina nivaloides is the main alga forming red snowfields in high mountains and Polar Regions. It is non-cultivable. Analysis of environmental samples by X-ray tomography, focused-ion-beam scanning-electron-microscopy, physicochemical and physiological characterization reveal adaptive traits accounting for algal capacity to reside in snow. Cysts populate liquid water at the periphery of ice, are photosynthetically active, can survive for months, and are sensitive to freezing. They harbor a wrinkled plasma membrane expanding the interface with environment. Ionomic analysis supports a cell efflux of K+, and assimilation of phosphorus. Glycerolipidomic analysis confirms a phosphate limitation. The chloroplast contains thylakoids oriented in all directions, fixes carbon in a central pyrenoid and produces starch in peripheral protuberances. Analysis of cells kept in the dark shows that starch is a short-term carbon storage. The biogenesis of cytosolic droplets shows that they are loaded with triacylglycerol and carotenoids for long-term carbon storage and protection against oxidative stress.
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| 22. |
- Fabre, Pierre-Henri, et al.
(författare)
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Multiple waves of colonization by monarch flycatchers (Myiagra, Monarchidae) across the Indo-Pacific and their implications for coexistence and speciation
- 2014
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Ingår i: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 41:2, s. 274-286
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Tidskriftsartikel (refereegranskat)abstract
- Aim Islands and archipelagos have played an important role in the development of ecological and evolutionary theories. Using a newly compiled molecular phylogeny we infer the biogeographical history of a monarch flycatcher genus, Myiagra, which is distributed across the Indo-Pacific. We subsequently integrate biogeographical and ecomorphological data to examine the role of dispersal and trait evolution in the build-up of avian assemblages. Location Australia, the Moluccas, New Guinea and Pacific islands. Methods We generated a taxonomically densely sampled mitochondrial DNA dataset that included almost all species and subspecies of the reciprocally monophyletic genera Myiagra and Arses. We then used maximum likelihoood and Bayesian inference to infer their phylogenetic relationships. To reconstruct their biogeographical history, we first dated the tree topology and then used Lagrange to infer ancestral geographical areas. Finally, we combined ancestral area reconstructions with information on ecomorphological traits to infer mechanisms underlying community assembly. Results We provide the first comprehensive molecular phylogenetic reconstruction for Myiagra and Arses monarch flycatchers. Our phylogenetic reconstruction reveals a relatively recent diversification from the Miocene associated with several major dispersal events. Ancestral area reconstruction reveals several independent colonizations of the Moluccas, Melanesia, Fiji and the Micronesian islands. Ancestral state reconstruction of ecological traits suggests that the diversity of traits in co-occurring species of monarch flycatchers results from independent colonization events and ecological niche conservatism rather than in situ diversification. Main conclusions Three waves of colonization, non-overlapping in time, led to independent speciation events in the Bismarcks, Fiji and the Moluccas, in addition to in situ speciation events on remote islands of Micronesia, the Solomons, Vanuatu and Samoa. Few of these colonizations have led to the co-occurrence of congenerics or species with similar ecomorphological profiles on the same island. Thus, we suggest that priority effects might prevent new colonizers from establishing themselves if they share high levels of ecological similarity with resident species. We conclude that historical dispersal to and colonization of new islands, combined with ecologically deterministic priority effects, drove the assembly of insular monarch flycatcher communities across the Indo-Pacific.
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| 23. |
- Flori, Serena, et al.
(författare)
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Plastid thylakoid architecture optimizes photosynthesis in diatoms
- 2017
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Ingår i: Nature Communications. - : Springer Nature. - 2041-1723. ; 8:1
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Tidskriftsartikel (refereegranskat)abstract
- Photosynthesis is a unique process that allows independent colonization of the land by plants and of the oceans by phytoplankton. Although the photosynthesis process is well understood in plants, we are still unlocking the mechanisms evolved by phytoplankton to achieve extremely efficient photosynthesis. Here, we combine biochemical, structural and in vivo physiological studies to unravel the structure of the plastid in diatoms, prominent marine eukaryotes. Biochemical and immunolocalization analyses reveal segregation of photosynthetic complexes in the loosely stacked thylakoid membranes typical of diatoms. Separation of photosystems within subdomains minimizes their physical contacts, as required for improved light utilization. Chloroplast 3D reconstruction and in vivo spectroscopy show that these subdomains are interconnected, ensuring fast equilibration of electron carriers for efficient optimum photosynthesis. Thus, diatoms and plants have converged towards a similar functional distribution of the photosystems although via different thylakoid architectures, which likely evolved independently in the land and the ocean.
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| 24. |
- Goetz, Charlotte, et al.
(författare)
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The plasma environment of comet 67P/Churyumov-Gerasimenko
- 2022
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Ingår i: Space Science Reviews. - : Springer. - 0038-6308 .- 1572-9672. ; 218:8
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Forskningsöversikt (refereegranskat)abstract
- The environment of a comet is a fascinating and unique laboratory to study plasma processes and the formation of structures such as shocks and discontinuities from electron scales to ion scales and above. The European Space Agency's Rosetta mission collected data for more than two years, from the rendezvous with comet 67P/Churyumov-Gerasimenko in August 2014 until the final touch-down of the spacecraft end of September 2016. This escort phase spanned a large arc of the comet's orbit around the Sun, including its perihelion and corresponding to heliocentric distances between 3.8 AU and 1.24 AU. The length of the active mission together with this span in heliocentric and cometocentric distances make the Rosetta data set unique and much richer than sets obtained with previous cometary probes. Here, we review the results from the Rosetta mission that pertain to the plasma environment. We detail all known sources and losses of the plasma and typical processes within it. The findings from in-situ plasma measurements are complemented by remote observations of emissions from the plasma. Overviews of the methods and instruments used in the study are given as well as a short review of the Rosetta mission. The long duration of the Rosetta mission provides the opportunity to better understand how the importance of these processes changes depending on parameters like the outgassing rate and the solar wind conditions. We discuss how the shape and existence of large scale structures depend on these parameters and how the plasma within different regions of the plasma environment can be characterised. We end with a non-exhaustive list of still open questions, as well as suggestions on how to answer them in the future.
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| 25. |
- Guerriero, Gea, et al.
(författare)
-
Chitin Synthases from Saprolegnia Are Involved in Tip Growth and Represent a Potential Target for Anti-Oomycete Drugs
- 2010
-
Ingår i: PLOS PATHOG. - : Public Library of Science (PLoS). - 1553-7366 .- 1553-7374. ; 6:8, s. e1001070-
-
Tidskriftsartikel (refereegranskat)abstract
- Oomycetes represent some of the most devastating plant and animal pathogens. Typical examples are Phytophthora infestans, which causes potato and tomato late blight, and Saprolegnia parasitica, responsible for fish diseases. Despite the economical and environmental importance of oomycete diseases, their control is difficult, particularly in the aquaculture industry. Carbohydrate synthases are vital for hyphal growth and represent interesting targets for tackling the pathogens. The existence of 2 different chitin synthase genes (SmChs1 and SmChs2) in Saprolegnia monoica was demonstrated using bioinformatics and molecular biology approaches. The function of SmCHS2 was unequivocally demonstrated by showing its catalytic activity in vitro after expression in Pichia pastoris. The recombinant SmCHS1 protein did not exhibit any activity in vitro, suggesting that it requires other partners or effectors to be active, or that it is involved in a different process than chitin biosynthesis. Both proteins contained N-terminal Microtubule Interacting and Trafficking domains, which have never been reported in any other known carbohydrate synthases. These domains are involved in protein recycling by endocytosis. Enzyme kinetics revealed that Saprolegnia chitin synthases are competitively inhibited by nikkomycin Z and quantitative PCR showed that their expression is higher in presence of the inhibitor. The use of nikkomycin Z combined with microscopy showed that chitin synthases are active essentially at the hyphal tips, which burst in the presence of the inhibitor, leading to cell death. S. parasitica was more sensitive to nikkomycin Z than S. monoica. In conclusion, chitin synthases with species-specific characteristics are involved in tip growth in Saprolegnia species and chitin is vital for the micro-organisms despite its very low abundance in the cell walls. Chitin is most likely synthesized transiently at the apex of the cells before cellulose, the major cell wall component in oomycetes. Our results provide important fundamental information on cell wall biogenesis in economically important species, and demonstrate the potential of targeting oomycete chitin synthases for disease control.
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| 26. |
- Gunell, Herbert, et al.
(författare)
-
Ion acoustic waves near a comet nucleus : Rosetta observations at comet 67P/Churyumov-Gerasimenko
- 2021
-
Ingår i: Annales Geophysicae. - : Copernicus GmbH. - 0992-7689 .- 1432-0576. ; 39:1, s. 53-68
-
Tidskriftsartikel (refereegranskat)abstract
- Ion acoustic waves were observed between 15 and 30 km from the centre of comet 67P/Churyumov-Gerasimenko by the Rosetta spacecraft during its close flyby on 28 March 2015. There are two electron populations: one cold at k(B)T(e) approximate to 0.2 eV and one warm at k(B)T(e) approximate to 2 eV. The ions are dominated by a cold (a few hundredths of electronvolt) distribution of water group ions with a bulk speed of (3-3.7) km s(-1). A warm k(B)T(e) approximate to 6 eV ion population, which also is present, has no influence on the ion acoustic waves due to its low density of only 0.25 % of the plasma density. Near closest approach the propagation direction was within 50 degrees from the direction of the bulk velocity. The waves, which in the plasma frame appear below the ion plasma frequency f(pi) approximate to 2 kHz, are Doppler-shifted to the spacecraft frame where they cover a frequency range up to approximately 4 kHz. The waves are detected in a region of space where the magnetic field is piled up and draped around the inner part of the ionised coma. Estimates of the current associated with the magnetic field gradient as observed by Rosetta are used as input to calculations of dispersion relations for current-driven ion acoustic waves, using kinetic theory. Agreement between theory and observations is obtained for electron and ion distributions with the properties described above. The wave power decreases over cometocentric distances from 24 to 30 km. The main difference between the plasma at closest approach and in the region where the waves are decaying is the absence of a significant current in the latter. Wave observations and theory combined supplement the particle measurements that are difficult at low energies and complicated by spacecraft charging.
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| 27. |
- Guntoro, Pratama Istiadi, 1993-, et al.
(författare)
-
X-ray Microcomputed Tomography (µCT) for Mineral Characterization : A Review of Data Analysis Methods
- 2019
-
Ingår i: Minerals. - Basel, Switzerland : MDPI. - 2075-163X. ; 9:3
-
Tidskriftsartikel (refereegranskat)abstract
- The main advantage of X-ray microcomputed tomography (µCT) as a non-destructive imaging tool lies in its ability to analyze the three-dimensional (3D) interior of a sample, therefore eliminating the stereological error exhibited in conventional two-dimensional (2D) image analysis. Coupled with the correct data analysis methods, µCT allows extraction of textural and mineralogical information from ore samples. This study provides a comprehensive overview on the available and potentially useful data analysis methods for processing 3D datasets acquired with laboratory µCT systems. Our study indicates that there is a rapid development of new techniques and algorithms capable of processing µCT datasets, but application of such techniques is often sample-specific. Several methods that have been successfully implemented for other similar materials (soils, aggregates, rocks) were also found to have the potential to be applied in mineral characterization. The main challenge in establishing a µCT system as a mineral characterization tool lies in the computational expenses of processing the large 3D dataset. Additionally, since most of the µCT dataset is based on the attenuation of the minerals, the presence of minerals with similar attenuations limits the capability of µCT in mineral segmentation. Further development on the data processing workflow is needed to accelerate the breakthrough of µCT as an analytical tool in mineral characterization.
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| 28. |
- Hajra, Rajkumar, et al.
(författare)
-
Cometary plasma response to interplanetary corotating interaction regions during 2016 June-September : a quantitative study by the Rosetta Plasma Consortium
- 2018
-
Ingår i: Monthly notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 480:4, s. 4544-4556
-
Tidskriftsartikel (refereegranskat)abstract
- Four interplanetary corotating interaction regions (CIRs) were identified during 2016 June-September by the Rosetta Plasma Consortium (RPC) monitoring in situ the plasma environment of the comet 67P/Churyumov-Gerasimenko (67P) at heliocentric distances of similar to 3-3.8 au. The CIRs, formed in the interface region between low- and high-speed solar wind streams with speeds of similar to 320-400 km s(-1) and similar to 580-640 km s(-1), respectively, are characterized by relative increases in solar wind proton density by factors of similar to 13-29, in proton temperature by similar to 7-29, and in magnetic field by similar to 1-4 with respect to the pre-CIR values. The CIR boundaries are well defined with interplanetary discontinuities. Out of 10 discontinuities, four are determined to be forward waves and five are reverse waves, propagating at similar to 5-92 per cent of the magnetosonic speed at angles of similar to 20 degrees-87 degrees relative to ambient magnetic field. Only one is identified to be a quasi-parallel forward shock with magnetosonic Mach number of similar to 1.48 and shock normal angle of similar to 41 degrees. The cometary ionosphere response was monitored by Rosetta from cometocentric distances of similar to 4-30 km. A quiet time plasma density map was developed by considering dependences on cometary latitude, longitude, and cometocentric distance of Rosetta observations before and after each of the CIR intervals. The CIRs lead to plasma density enhancements of similar to 500-1000 per cent with respect to the quiet time reference level. Ionospheric modelling shows that increased ionization rate due to enhanced ionizing (>12-200 eV) electron impact is the prime cause of the large cometary plasma density enhancements during the CIRs. Plausible origin mechanisms of the cometary ionizing electron enhancements are discussed.
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| 29. |
- Hajra, Rajkumar, et al.
(författare)
-
Dynamic unmagnetized plasma in the diamagnetic cavity around comet 67P/Churyumov-Gerasimenko
- 2018
-
Ingår i: Monthly notices of the Royal Astronomical Society. - : Oxford University Press. - 0035-8711 .- 1365-2966. ; 475:3, s. 4140-4147
-
Tidskriftsartikel (refereegranskat)abstract
- The Rosetta orbiter witnessed several hundred diamagnetic cavity crossings (unmagnetized regions) around comet 67P/Churyumov-Gerasimenko during its two year survey of the comet. The characteristics of the plasma environment inside these diamagnetic regions are studied using in situ measurements by the Rosetta Plasma Consortium instruments. Although the unmagnetized plasma density has been observed to exhibit little dynamics compared to the very dynamical magnetized cometary plasma, we detected several localized dynamic plasma structures inside those diamagnetic regions. These plasma structures are not related to the direct ionization of local cometary neutrals. The structures are found to be steepened, asymmetric plasma enhancements with typical rising-to-descending slope ratio of similar to 2.8 (+/- 1.9), skewness similar to 0.43 (+/- 0.36), mean duration of similar to 2.7 (+/- 0.9) min and relative density variation Delta N/N of similar to 0.5 (+/- 0.2), observed close to the electron exobase. Similar steepened plasma density enhancements were detected at the magnetized boundaries of the diamagnetic cavity as well as outside the diamagnetic region. The plausible scalelength and propagation direction of the structures are estimated from simple plasma dynamics considerations. It is suggested that they are large-scale unmagnetized plasma enhancements, transmitted from the very dynamical outer magnetized region to the inner magnetic field-free cavity region.
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| 30. |
- Irestedt, Martin, et al.
(författare)
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The spatio-temporal colonization and diversification across the Indo-Pacific by a 'great speciator' (Aves, Erythropitta erythrogaster).
- 2013
-
Ingår i: Proceedings of the Royal Society of London. Biological Sciences. - : The Royal Society. - 0962-8452 .- 1471-2954. ; 280:1759, s. 20130309-
-
Tidskriftsartikel (refereegranskat)abstract
- The Indo-Pacific region has arguably been the most important area for the formulation of theories about biogeography and speciation, but modern studies of the tempo, mode and magnitude of diversification across this region are scarce. We study the biogeographic history and characterize levels of diversification in the wide-ranging passerine bird Erythropitta erythrogaster using molecular, phylogeographic and population genetics methods, as well as morphometric and plumage analyses. Our results suggest that E. erythrogaster colonized the Indo-Pacific during the Pleistocene in an eastward direction following a stepping stone pathway, and that sea-level fluctuations during the Pleistocene may have promoted gene flow only locally. A molecular species delimitation test suggests that several allopatric island populations of E. erythrogaster may be regarded as species. Most of these putative new species are further characterized by diagnostic differences in plumage. Our study reconfirms the E. erythrogaster complex as a 'great speciator': it represents a complex of up to 17 allopatrically distributed, reciprocally monophyletic and/or morphologically diagnosable species that originated during the Pleistocene. Our results support the view that observed latitudinal gradients of genetic divergence among avian sister species may have been affected by incomplete knowledge of taxonomic limits in tropical bird species.
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| 31. |
- Janhunen, Pekka, et al.
(författare)
-
Electric Solar Wind Sail in tailwind
- 2011
-
Ingår i: EPSC-DPS Joint Meeting 2011.
-
Konferensbidrag (refereegranskat)abstract
- The Electric Solar Wind Sail (E-sail) is a novelpropulsion concept that enables faster space travel tomany solar system targets. E-sail uses charged solarwind particles as the source of its propulsion. This isachieved by deploying long, conducting and chargedtethers, which get pushed by the solar wind byCoulomb drag [1].E-sail technology is being developed to technicalreadiness level (TRL) 4-5 by the European Union’sSeventh Framework Programme for Research andTechnological Development, EU FP7, in a projectnamed ESAIL (http://www.electric-sailing.fi/fp7).Prototypes of the key parts are to be produced. Thedesign will be scalable so that a real solar winddemonstration mission could be scaled up from them.We review here the latest results of the constantlyevolving E-sail project.
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| 32. |
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| 33. |
- Johansson, Fredrik Leffe, 1988-, et al.
(författare)
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Plasma densitites, flow and Solar EUV flux at comet 67P : A cross-calibration approach
-
Ingår i: Astronomy and Astrophysics. - 0004-6361 .- 1432-0746.
-
Tidskriftsartikel (refereegranskat)abstract
- Context.During its two year mission at comet 67P, Rosetta nearly continuously monitored the inner coma plasma environment forgas production rates varying over three orders of magnitude, at distances to the nucleus from a few to a few hundred km. To achievethe best possible measurements, cross-calibration of the plasma instruments is needed.Aims.To provide a consistent plasma density data set for the full mission, in the process providing a statistical characterisation of theplasma processes in the inner coma and their evolution.Methods.We construct physical models for two different methods to cross-calibrate the spacecraft potential and the ion current asmeasured by the Rosetta Langmuir Probes (LAP) to the electron density as measured by the Mutual Impedance Probe (MIP). We alsodescribe the methods used to estimate spacecraft potential, and validate the results with the Ion Composition Analyser, (ICA).Results.We retrieve a continuous plasma density dataset for the entire cometary mission with a much improved dynamical rangecompared to any plasma instrument alone and, at times, improve the temporal resolution from 0.24-0.74 Hz to 57.8 Hz. The physicalmodel also yields, at 3 hour time resolution, ion flow speeds as well as a proxy for the solar EUV flux from the photoemission fromthe Langmuir Probes.Conclusions.We report on two independent estimates of the ion flow speed which are consistent with the bulk H2O+ion velocitiesas measured by ICA. We find the ion flow to be much faster than the neutral gas, lending further evidence that the ions are mostlycollisionally decoupled from the neutrals in the coma. Also, the measured EUV flux is perfectly consistent with independent measurements previously published in Johansson et al. (2017) and lends support for the conclusions drawn therein regarding an attenuationof solar EUV from a distant nanograin dust population between the comet and the Sun, when the comet activity was high. The newdensity dataset is consistent with the existing MIP density dataset, but facilitates plasma analysis at much shorter timescales, with anincreased temporal resolution of a factor of (up to) 240 and covers also long time periods where densities were too low to be measuredby MIP.
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| 34. |
- Jones, Geraint H., et al.
(författare)
-
The Comet Interceptor Mission
- 2024
-
Ingår i: Space Science Reviews. - : Springer Nature. - 0038-6308 .- 1572-9672. ; 220:1
-
Tidskriftsartikel (refereegranskat)abstract
- Here we describe the novel, multi-point Comet Interceptor mission. It is dedicated to the exploration of a little-processed long-period comet, possibly entering the inner Solar System for the first time, or to encounter an interstellar object originating at another star. The objectives of the mission are to address the following questions: What are the surface composition, shape, morphology, and structure of the target object? What is the composition of the gas and dust in the coma, its connection to the nucleus, and the nature of its interaction with the solar wind? The mission was proposed to the European Space Agency in 2018, and formally adopted by the agency in June 2022, for launch in 2029 together with the Ariel mission. Comet Interceptor will take advantage of the opportunity presented by ESA’s F-Class call for fast, flexible, low-cost missions to which it was proposed. The call required a launch to a halo orbit around the Sun-Earth L2 point. The mission can take advantage of this placement to wait for the discovery of a suitable comet reachable with its minimum Δ V capability of 600 ms − 1 . Comet Interceptor will be unique in encountering and studying, at a nominal closest approach distance of 1000 km, a comet that represents a near-pristine sample of material from the formation of the Solar System. It will also add a capability that no previous cometary mission has had, which is to deploy two sub-probes – B1, provided by the Japanese space agency, JAXA, and B2 – that will follow different trajectories through the coma. While the main probe passes at a nominal 1000 km distance, probes B1 and B2 will follow different chords through the coma at distances of 850 km and 400 km, respectively. The result will be unique, simultaneous, spatially resolved information of the 3-dimensional properties of the target comet and its interaction with the space environment. We present the mission’s science background leading to these objectives, as well as an overview of the scientific instruments, mission design, and schedule.
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| 35. |
- Jones, Owen R., et al.
(författare)
-
Senescence rates are determined by ranking on the fast-slow life-history continuum
- 2008
-
Ingår i: Ecology Letters. - : Wiley. - 1461-023X .- 1461-0248. ; 11:7, s. 664-673
-
Tidskriftsartikel (refereegranskat)abstract
- Comparative analyses of survival senescence by using life tables have identified generalizations including the observation that mammals senesce faster than similar-sized birds. These generalizations have been challenged because of limitations of life-table approaches and the growing appreciation that senescence is more than an increasing probability of death. Without using life tables, we examine senescence rates in annual individual fitness using 20 individual-based data sets of terrestrial vertebrates with contrasting life histories and body size. We find that senescence is widespread in the wild and equally likely to occur in survival and reproduction. Additionally, mammals senesce faster than birds because they have a faster life history for a given body size. By allowing us to disentangle the effects of two major fitness components our methods allow an assessment of the robustness of the prevalent life-table approach. Focusing on one aspect of life history - survival or recruitment - can provide reliable information on overall senescence.
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| 36. |
- Jønsson, Knud A, et al.
(författare)
-
Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas.
- 2012
-
Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 109:17, s. 6620-5
-
Tidskriftsartikel (refereegranskat)abstract
- Adaptive radiation is the rapid diversification of a single lineage into many species that inhabit a variety of environments or use a variety of resources and differ in traits required to exploit these. Why some lineages undergo adaptive radiation is not well-understood, but filling unoccupied ecological space appears to be a common feature. We construct a complete, dated, species-level phylogeny of the endemic Vangidae of Madagascar. This passerine bird radiation represents a classic, but poorly known, avian adaptive radiation. Our results reveal an initial rapid increase in evolutionary lineages and diversification in morphospace after colonizing Madagascar in the late Oligocene some 25 Mya. A subsequent key innovation involving unique bill morphology was associated with a second increase in diversification rates about 10 Mya. The volume of morphospace occupied by contemporary Madagascan vangas is in many aspects as large (shape variation)--or even larger (size variation)--as that of other better-known avian adaptive radiations, including the much younger Galapagos Darwin's finches and Hawaiian honeycreepers. Morphological space bears a close relationship to diet, substrate use, and foraging movements, and thus our results demonstrate the great extent of the evolutionary diversification of the Madagascan vangas.
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| 37. |
- Kasaba, Yasumasa, et al.
(författare)
-
Plasma Wave Investigation (PWI) Aboard BepiColombo Mio on the Trip to the First Measurement of Electric Fields, Electromagnetic Waves, and Radio Waves Around Mercury
- 2020
-
Ingår i: Space Science Reviews. - : SPRINGER. - 0038-6308 .- 1572-9672. ; 216:4
-
Forskningsöversikt (refereegranskat)abstract
- The Plasma Wave Investigation (PWI) aboard the BepiColombo Mio (Mercury Magnetospheric Orbiter, MMO) will enable the first observations of electric fields, plasma waves, and radio waves in and around the Hermean magnetosphere and exosphere. The PWI has two sets of receivers (EWO with AM(2)P, SORBET) connected to two electric field sensors (MEFISTO and WPT) and two magnetic field sensors (SCM: LF-SC and DB-SC). After the launch on October 20, 2018, we began initial operations, confirmed that all receivers were functioning properly, and released the launch locks on the sensors. Those sensors are not deployed during the cruising phase, but the PWI is still capable performing magnetic field observations. After full deployment of all sensors following insertion into Mercury orbit, the PWI will start its measurements of the electric field from DC to 10 MHz using two dipole antennae with a 32-m tip-to-tip length in the spin plane and the magnetic field from 0.3 Hz to 20 kHz using a three-axis sensor and from 2.5 kHz to 640 kHz using a single-axis sensor at the tip of a 4.5-m solid boom extended from the spacecraft's side panel. Those receivers and sensors will provide (1) in-situ measurements of electron density and temperature that can be used to determine the structure and dynamics of the Hermean plasma environment; (2) in-situ measurements of the electron and ion scale waves that characterize the energetic processes governed by wave-particle interactions and non-MHD interactions; (3) information on radio waves, which can be used to remotely probe solar activity in the heliocentric sector facing Mercury, to study electromagnetic-energy transport to and from Mercury, and to obtain crustal information from reflected electromagnetic waves; and (4) information concerning dust impacts on the spacecraft body detected via potential disturbances. This paper summarizes the characteristics of the overall PWI, including its significance, its objectives, its expected performance specifications, and onboard and ground data processing. This paper also presents the detailed design of the receiver components installed in a unified chassis. The PWI in the cruise phase will observe magnetic-field turbulence during multiple flybys of Earth, Venus, and Mercury. After the Mercury-orbit insertion planned at the end of 2025, we will deploy all sensors and commence full operation while coordinating with all payloads onboard the Mio and MPO spacecraft.
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| 38. |
- Koch, Pierre-Henri, 1988-
(författare)
-
A numerical study of the effects of microwave pre-treatment on value liberation from a zinc ore
- 2019
-
Konferensbidrag (refereegranskat)abstract
- The extraction of mineral values from ore requires liberation followed by separation steps. Liberation is achieved by size reduction operations which are energy inefficient processes typically dominating the energy consumption in a mineral concentrator. As the grade of ore reserves declines, future viability of mineral operations will be determined by energy costs of comminution. The application of high power microwave energy to secondary crusher products has been suggested as a possible commercially viable thermal treatment method for reducing comminution energy and improving value mineral liberation. Recent studies have shown that microwave pre-treatment of coarse sphalerite ore particles (> 5mm) at specific microwave heating energies (1-3 kWh/t), induces microfractures and creates new crack surfaces. This suggests that subsequent crushing of these microwave treated particles could yield enhanced liberation. However, limited studies have been carried out investigating the mode of breakage and the extent of enhanced liberation in that case. The objective of this study is to develop numerical methods for quantifying the extent of enhanced liberation and mode of breakage in crushed microwave treated and untreated particles. Sphalerite ore particles representing small (-5+4.75) mm, medium (-16+9.5) mm, and large (-25+19) mm HPGR and cone crushed particles were microwave treated at specific energies between 1-3 kWh/t. Cracks in the ore particles before and after microwave treatment were analysed with QEMSCAN and numerical models of the measured particles (before and after microwave treatment) were developed in MATLAB. The propagation of random and nonrandom cracks was investigated by simulating comminution of the modelled treated and untreated particles. Results of this study demonstrate that the breakage mechanism and the liberation of valuable minerals from gangue in microwave treated and untreated particles is significantly different. This study contributes to the development of numerical tools to quantify crack propagation in heterogeneous ore particles.
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| 39. |
- Koch, Pierre-Henri, 1988-, et al.
(författare)
-
Automated drill core mineralogical characterization method for texture classification and modal mineralogy estimation for geometallurgy
- 2019
-
Ingår i: Minerals Engineering. - Amsterdam : Elsevier. - 0892-6875 .- 1872-9444. ; 136, s. 99-109
-
Tidskriftsartikel (refereegranskat)abstract
- In geometallurgy, a process model operating at the mineral liberation level needs quantitative textural information about the ore. The utilization of this information within process modeling and simulation will increase the quality of the predictions.In this study, descriptors derived from color images and machine learning algorithms are used to group drill core intervals into textural classes and estimate mineral maps by automatic pixel classification. Different descriptors and classifiers are compared, based on their accuracy and capacity to be automated. Integration of the classifier approach with mineral processing simulation is also demonstrated. The quantification of textural information for mineral processing simulation introduced new tools towards an integrated information flow from the drill cores to a geometallurgical model.The approach has been verified by comparing traditional geological texture classification against the one obtained from automatic methods. The tested drill cores are sampled from a porphyry copper deposit located in Northern Sweden.
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| 40. |
- Koch, Pierre-Henri, 1988-
(författare)
-
Computational methods and strategies for geometallurgy
- 2019
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- At the interface of geology and mineral processing, geometallurgy is a powerful tool for enhancingresource efficiency. A spatial model that represents the ore body in terms ofmineralogyand physical properties is combined with a process model that describes the concentrationprocess. The performance of a given ore in the process is computed in terms of gradeand recovery of the mineral of interest in the concentrate, but also the presence of potentialpenalty elements and energy costs. The inclusion of ore performance indicators in a blockmodel yields a geometallurgical model that considers the variations in an ore body.Progress has been made in recent years to list and study different processing options interms of data requirements and implementation costs. While providing useful data, littleadvance was made to guide decision-making and to handle uncertainty. The objective has,therefore, been to develop, choose and validate computational methods that suggest optimaldecisions in the scope of geometallurgical strategies for an iron ore and a porphyry copperdeposit.The selected approach is based on an analysis of structure and regularity fromthe ore blockdown to the mineral grains. By selecting the appropriate mathematical tool for each scale,the dimension of the data is reduced and the different scales are then taken into account inmaking decisions. Methods introduced for dimension reduction include machine learningmodels, statistical models and spectral descriptors. The decision models rely on stochasticmulti-armed bandits which are a form of reinforcement learning. The presentation of thedifferent models proceeds by zooming in from coarse scale to fine scale then taking a stepback and analyze the implications. Data that was collected during sampling campaigns andindustrial plant surveys is used to design and verify the proposedmodels.iWith regard to the dimension reduction problem, results showed the method’s ability toclassify mineral textures and identify mineral phases with more than 90 percent accuracy onthe selected data sets of optical images and incorporate different physical properties into ageometallurgical ore type classification. Decision results showed that strategies in the case ofa feed grade control or when different ore types were identified, resulted in a twofold increaseof a reward function which is either Boolean (the product fulfills quality requirements ornot), or continuous (an economic objective). The cumulative value of the reward functionmeasured the optimality of a processing strategy. Quantitative methods were introduced toevaluate ore classification as well as geometallurgical strategies.The achieved results suggest the introduction of these computationalmethods in the practiceof geometallurgy. The increased knowledge of different ore type performances and appropriatemodels lead to optimal decisions for improved resource efficiency along the ore valuechain. This is achieved by bothmaximizing profit and decreasing environmental impact, forexample by choosing processing routes that minimize energy consumption.
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| 41. |
- Koch, Pierre-Henri, et al.
(författare)
-
How to Build a Process Model in a Geometallurgical Program?
- 2015
-
Ingår i: Mineral Resources in a Sustainable World. - 9782855550664 ; , s. 1419-1422
-
Konferensbidrag (refereegranskat)abstract
- This work presents a literature review on ways to acquire relevant experimental data for the process model of a geometallurgical program. It identifies the needs in several unit models and proposes ideas for future developments
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| 42. |
- Koch, Pierre-Henri, 1988-
(författare)
-
Particle generation for geometallurgical process modeling
- 2017
-
Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- A geometallurgical model is the combination of a spatial model representing an ore deposit and a process model representing the comminution and concentration steps in beneficiation. The process model itself usually consists of several unit models. Each of these unit models operates at a given level of detail in material characterization - from bulk chemical elements, elements by size, bulk minerals and minerals by size to the liberation level that introduces particles as the basic entity for simulation (Paper 1).In current state-of-the-art process simulation, few unit models are defined at the particle level because these models are complex to design at a more fundamental level of detail, liberation data is hard to measure accurately and large computational power is required to process the many particles in a flow sheet. Computational cost is a consequence of the intrinsic complexity of the unit models. Mineral liberation data depends on the quality of the sampling and the polishing, the settings and stability of the instrument and the processing of the data.This study introduces new tools to simulate a population of mineral particles based on intrinsic characteristics of the feed ore. Features are extracted at the meso-textural level (drill cores) (Paper 2), put in relation to their micro-textures before breakage and after breakage (Paper 3). The result is a population of mineral particles stored in a file format compatible to import into process simulation software. The results show that the approach is relevant and can be generalized towards new characterization methods.The theory of image representation, analysis and ore texture simulation is briefly introduced and linked to 1-point, 2-point, and multiple-point methods from spatial statistics. A breakage mechanism is presented as a cellular automaton. Experimental data and examples are taken from a copper-gold deposit with a chalcopyrite flotation circuit, an iron ore deposit with a magnetic separation process.This study is covering a part of a larger research program, PREP (Primary resource efficiency by enhanced prediction).
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| 43. |
- Koch, Pierre-Henri, 1988-, et al.
(författare)
-
Sequential decision-making in mining and processing based on geometallurgical inputs
- 2020
-
Ingår i: Minerals Engineering. - : Elsevier. - 0892-6875 .- 1872-9444. ; 149
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Tidskriftsartikel (refereegranskat)abstract
- Geometallurgy as a multi-disciplinary field has been applied at various levels in different operations. By linking the ore performance in mineral beneficiation processes to the ore block model, it supports estimating the value of a block before it is mined. Efforts in the classification of the ore into geometallurgical classes have led to a better understanding of the entire value chain. While classification provides a convenient tool for forecasting and visualization purposes, it simplifies the actual complexity of an ore body. In mining and process planning, sequential decisions are made to maximize an objective function or equivalently minimize a regret function. Using available information from geology or metallurgical test work, an optimal strategy can be found using tools from the machine learning community.In this study, a framework based on machine learning to maximize the use of such classifications for sequential decision-making is proposed. The concepts of reinforcement learning and bandit algorithms, offer powerful tools to explore and exploit different optimization strategies. In certain cases, theoretical guarantees about the performance of given methods can be obtained by regret bounds.Based on existing models of a porphyry copper deposit and an iron ore deposit, this study presents a methodology and different available algorithms to maximize an objective function that depends on a high number of variables and in the presence of noise or uncertainty in the models. Different numerical experiments provide a basis for discussion and comparison to human decisions. The hypotheses relative to each algorithm are discussed in relation to the mineral processing models.
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| 44. |
- Koch, Pierre-Henri, et al.
(författare)
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Textural Variants of Iron Ore from Malmberget : Characterisation, Comminution and Mineral Liberation
- 2013
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Ingår i: Exploration, Resource & Mining Geology Conference 2013. - Cardiff, Wales, UK : The Australian Institute of Mining and Metallurgy.
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Konferensbidrag (refereegranskat)abstract
- The Geometallurgy combines geology and mineralogy, processing techniques and metallurgy into spatially-based predictive model and is useful tool that can be used in production management of a mineral processing plant. This work presents characterisation of different textural variants of the breccia iron ore from Malmberget, Northern Sweden, an iron mine operated by Luossavaara-Kiirunavaara Aktiebolag (LKAB). Experimental work includes point load tests, compressive tests, and laboratory grinding and liberation measurements of the products. The motivation of this work is based on the need of the industry to predict the throughput, particle size distribution, modal mineralogy, mineral textures and specific energy of the material.Around Magnetite orebodies, a wide range of feldspar-rich iron ore breccia has been described and classified by Lund, Lamberg (2013a) into eight different classes according to their feldspar content. The two end-members exhibit, respectively, a high iron grade (low feldspar content) and low iron grade (high feldspar content). A definition for the micro texture (micro fabrics) used in this study has been developed by Lund, Lamberg and Lindberg (2013b): two sample are texturally different if their modally refined liberation distribution is different in a given particle size. The hypothesis of the study is that it should be possible to quantitatively describe the textures of Malmberget feldspar type with two textural archetypes: high-graded massive and low-graded disseminated. The sample used were named after the earlier classification from CF1 (low iron grade) to CF8 (high iron grade) and compared per class. After simple rock mechanics tests, the second step involved comminution with a jaw crusher with 5 mm opening followed by 20 minutes in a ball mill with 1L of water for 1.2 kg of material. The 53 to 75 µm size fraction was selected for further characterisation and liberation analysis with x-ray fluorescence (XRF) and scanning electron microscope (SEM).The point load tests and compressive tests showed good agreement. When combined with specific gravity measurements, these properties allowed grouping of the eight classes into three clusters instead of the two end-members proposed initially. The jaw crusher and ball mill sieving curves further more supported this classification.The study with a SEM using INCA Mineral software and HSC Geo provided information on modal mineralogy, particles and degree of liberation in the 53 to 75 µm size fraction. Using these results, an association index (AI), describing how gangue minerals are associated with magnetite in the ore breccia, was calculated. Preliminary linear models predicting a relative work index for ball mill, the reduction ratio for jaw crusher and the degree of liberation of magnetite-based on modal mineralogy or mechanical properties were developed.While further work is required, this study shown the relevance and practical utility of the method used and indicates a relation between mechanical strength, iron ore grade, physical properties and textural information. The main hypothesis of two end-members had to be rejected and three classes were introduced instead, due to the large variability of breccia. Additional studies could include a higher number of samples, evaluate which mechanical tests are relevant in a context of geometallurgy, find a way to directly measure the AI and describe the effect of mixing different kinds of ore breccia before comminution in terms of particles, energy consumption and liberation
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| 45. |
- Koch, Pierre-Henri, 1988-, et al.
(författare)
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Texture-based liberation models for comminution
- 2017
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Ingår i: Konferens i Mineralteknik 2017. - Luleå. ; , s. 83-96
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- The relation between breakage mechanisms and liberation is critical in mineral processing. Recent studies underline the importance of texture in liberation. This study reviews relevant liberation models and proposes a new method for generating particles using image processing algorithms. One new texture simulation method and its relevance for liberation simulation is also introduced.
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| 46. |
- Lapenta, Giovanni, et al.
(författare)
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SWIFF : Space weather integrated forecasting framework
- 2013
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Ingår i: Journal of Space Weather and Space Climate. - : EDP Sciences. - 2115-7251. ; 3, s. A05-
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Tidskriftsartikel (refereegranskat)abstract
- SWIFF is a project funded by the Seventh Framework Programme of the European Commission to study the mathematical-physics models that form the basis for space weather forecasting. The phenomena of space weather span a tremendous scale of densities and temperature with scales ranging 10 orders of magnitude in space and time. Additionally even in local regions there are concurrent processes developing at the electron, ion and global scales strongly interacting with each other. The fundamental challenge in modelling space weather is the need to address multiple physics and multiple scales. Here we present our approach to take existing expertise in fluid and kinetic models to produce an integrated mathematical approach and software infrastructure that allows fluid and kinetic processes to be modelled together. SWIFF aims also at using this new infrastructure to model specific coupled processes at the Solar Corona, in the interplanetary space and in the interaction at the Earth magnetosphere.
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| 47. |
- Lemaigre, Camille, et al.
(författare)
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N-BAR and F-BAR proteins - Endophilin-A3 and PSTPIP1 - control clathrin-independent endocytosis of L1CAM
- 2023
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Ingår i: Traffic: the International Journal of Intracellular Transport. - : Wiley. - 1398-9219. ; 24:4, s. 190-212
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Tidskriftsartikel (refereegranskat)abstract
- Recent advances in the field demonstrate the high diversity and complexity of endocytic pathways. In the current study, we focus on the endocytosis of L1CAM. This glycoprotein plays a major role in the development of the nervous system, and is involved in cancer development and is associated with metastases and poor prognosis. Two L1CAM isoforms are subject to endocytosis: isoform 1, described as a clathrin-mediated cargo; isoform 2, whose endocytosis has never been studied. Deciphering the molecular machinery of isoform 2 internalisation should contribute to a better understanding of its pathophysiological role. First, we demonstrated in our cellular context that both isoforms of L1CAM are mainly a clathrin-independent cargo, which was not expected for isoform 1. Second, the mechanism of L1CAM endocytosis is specifically mediated by the N-BAR domain protein endophilin-A3. Third, we discovered PSTPIP1, an F-BAR domain protein, as a novel actor in this endocytic process. Finally, we identified galectins as endocytic partners and negative regulators of L1CAM endocytosis. In summary, the interplay of the BAR proteins endophilin-A3 and PSTPIP1, and galectins fine tune the clathrin-independent endocytosis of L1CAM.
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| 48. |
- Lishchuk, Viktor, 1984-, et al.
(författare)
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Geometallurgical characterisation of Leveäniemi iron ore : unlocking the patterns
- 2018
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Ingår i: Conference in Minerals Engineering.
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Konferensbidrag (refereegranskat)abstract
- Geometallurgy of iron ores aims at linking geological variability and responses in the beneficiation process by a wide usage of automated mineralogy, proxy metallurgical tests (e.g., Davis tube) and process simulation.In this study several patterns from iron ore processing, in context of their textural description, are revealed and modelling is attempted. The first one is an ore classification method with a novel quality estimator XLTU. The second one is an algorithm for predicting iron recovery in wet low intensity magnetic separator (WLIMS). The last one is predicting liberation distribution of iron oxides. Process variables are generated with a Davis tube and a WLIMS test. All streams are chemically characterised. Ore feed was studied for modal mineralogy and liberation distribution with QEMSCAN (Quantitative Evaluation of Minerals by Scanning Electron Microscopy). Post-processing for detecting the patterns and data dependencies was done with multivariate statistics: principal component analysis (PCA), and projection to latent structures regression (PLS). The study was done on 13 apatite iron ore type samples from the Leveäniemi mine (LKAB).It is concluded that Davis tube test is better used only for marginal ores, since iron oxide minerals tend to be fully liberated in high grade magnetite massive ores after grinding. In addition, they will give high recovery and high mass pull in a Davis tube test.The developed models can be used in populating a production block model in the future. Furthermore, future work should cover larger variability of marginal ores in terms of Fe grades and modal mineralogy (e.g. feldspar, amphibole, apatite dominated). Variability of grain size distribution ought to be included into future studies.
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| 49. |
- Lishchuk, Viktor, 1984-, et al.
(författare)
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Geometallurgical characterisation of Leveäniemi iron ore : Unlocking the patterns
- 2019
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Ingår i: Minerals Engineering. - : Elsevier. - 0892-6875 .- 1872-9444. ; 131, s. 325-335
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Tidskriftsartikel (refereegranskat)abstract
- As part of a geometallurgical program for the Leveänimei iron ore mine, the Davis tube was used as proxy to classify ore types, predict iron recoveries in wet low-intensity magnetic separation (WLIMS), and to estimate liberation of mixed particles. The study was conducted by testing 13 iron ore samples with a Davis tube and a laboratory WLIMS. Ore feed was studied for modal mineralogy and liberation distribution with Automated Scanning Electron Microscopy. Data analyses to detect the patterns and data dependencies were done with multivariate statistics: principal component analysis, and projection to latent structures regression. Results show that a simple index (XLTU) based on mass pull (yield) in the Davis tube is capable of easy classification of magnetite ores. Using Davis tube mass pull and iron recovery, together with iron and Satmagan head grades may predict iron recovery in WLIMS. Also, the variability in Fe-oxides liberation pattern for magnetite semi-massive ores can be explained with the chemical composition of the Davis tube concentrate. It is concluded that the Davis tube test is better used only for marginal ores, since iron oxide minerals tend to be fully liberated in high-grade magnetite massive ores after grinding. The developed models may be used in populating a production block model.
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| 50. |
- Lishchuk, Viktor, et al.
(författare)
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The geometallurgical framework : Malmberget and Mikheevskoye case studies
- 2015
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Ingår i: Mining Science. - 2300-9586. ; 22:Special Issue 2, s. 57-66
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Tidskriftsartikel (refereegranskat)abstract
- Geometallurgy is a growing area within a mineral processing industry. It brings together tasks of geologists and mineral processing engineers to do short and medium term production planning. However, it is also striving to deal with long term tasks such as changes in either production flow sheet or considering different scenarios. This paper demonstrates capabilities of geometallurgy through two case studies from perspective of Minerals and Metallurgical Engineering division Lulea University of Technology. A classification system of geometallurgical usages and approaches was developed in order to describe a working framework. A practical meaning of classification system was proved in two case studies: Mikheevskoye (Russia) and Malmberget (Sweden) projects. These case studies, where geometallurgy was applied in a rather systematic way, have shown the amount of work required for moving the project within the geometallurgical framework, which corresponds to shift of the projects location within the geometallurgical classification system.
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