| 1. |
- Blomgren, Jakob, et al.
(författare)
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Development of a sensitive induction-based magnetic nanoparticle biodetection method
- 2018
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Ingår i: Nanomaterials. - : MDPI AG. - 2079-4991. ; 8:11
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Tidskriftsartikel (refereegranskat)abstract
- We developed a novel biodetection method for influenza virus based on AC magnetic susceptibility measurement techniques (the DynoMag induction technique) together with functionalized multi-core magnetic nanoparticles. The sample consisting of an incubated mixture of magnetic nanoparticles and rolling circle amplified DNA coils is injected into a tube by a peristaltic pump. The sample is moved as a plug to the two well-balanced detection coils and the dynamic magnetic moment in each position is read over a range of excitation frequencies. The time for making a complete frequency sweep over the relaxation peak is about 5 minutes (10 Hz–10 kHz with 20 data points). The obtained standard deviation of the magnetic signal at the relaxation frequency (around 100 Hz) is equal to about 10−5 (volume susceptibility SI units), which is in the same range obtained with the DynoMag system. The limit of detection with this method is found to be in the range of 1 pM.
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| 2. |
- Aspholm-Hurtig, Marina, et al.
(författare)
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Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin.
- 2004
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Ingår i: Science (New York, N.Y.). - : American Association for the Advancement of Science (AAAS). - 1095-9203 .- 0036-8075. ; 305:5683, s. 519-22
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Tidskriftsartikel (refereegranskat)abstract
- Adherence by Helicobacter pylori increases the risk of gastric disease. Here, we report that more than 95% of strains that bind fucosylated blood group antigen bind A, B, and O antigens (generalists), whereas 60% of adherent South American Amerindian strains bind blood group O antigens best (specialists). This specialization coincides with the unique predominance of blood group O in these Amerindians. Strains differed about 1500-fold in binding affinities, and diversifying selection was evident in babA sequences. We propose that cycles of selection for increased and decreased bacterial adherence contribute to babA diversity and that these cycles have led to gradual replacement of generalist binding by specialist binding in blood group O-dominant human populations.
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| 3. |
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| 4. |
- Bernard, Thomas, et al.
(författare)
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SAFEWATER - Innovative tools for the detection and mitigation of CBRN related contamination events of drinking water
- 2015
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Ingår i: Procedia Engineering. - : Elsevier BV. - 1877-7058. ; 119, s. 352-359
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Tidskriftsartikel (refereegranskat)abstract
- The safety and or security of drinking water can be threatened by natural disasters, accidents or malevolent attacks. The European FP7 project SAFEWATER aims at developing a comprehensive event detection and event management solution for drinking water security management and mitigation against major deliberate, accidental or natural CBRN related contaminations. New cost-effective C, B, and RN sensors will be developed. An innovative concept with a broad network of low-cost sensors - "domestic sensors" (complementary to a set of sensors in strategic locations) will be developed. A technology platform will be provide which is able to capture and analyze the data collected by the sensors and from other information systems and give a full overview of the crisis to the responders by means of online look-ahead simulations to efficiently manage potential crises. For testing the SAFEWATER solution it will be integrated with on utility-partners' information systems.
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| 5. |
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| 6. |
- Bugaytsova, Jeanna, et al.
(författare)
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pH regulated H. pylori adherence : implications for persistent infection and disease
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Helicobacter pylori’s BabA adhesin binds strongly to gastric mucosal ABH/Leb glycans on the stomach epithelium and overlying mucus, materials continuously shed into the acidic gastric lumen. Here we report that this binding is acid labile, acid inactivation is fully reversible; and acid lability profiles vary with BabA sequence and correlate with disease patterns. Isogenic H. pylori strains from the gastric antrum and more acidic corpus were identified that differed in acid lability of receptor binding and in sequence near BabA’s carbohydrate binding domain. We propose that reversible acid inactivation of receptor binding helps H. pylori avoid clearance by mucosal shedding, and that strain differences in acid lability affect tissue tropism and the spectrum of associated gastric diseases.
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| 7. |
- Fornara, Andrea, et al.
(författare)
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Tailored Magnetic Nanoparticles for Direct and Sensitive Detection of Biomolecules in Biological Samples
- 2008
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Ingår i: Nano letters (Print). - : American Chemical Society (ACS). - 1530-6984 .- 1530-6992. ; 8:10, s. 3423-3428
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Tidskriftsartikel (refereegranskat)abstract
- We developed nanoparticles with tailored magnetic properties for sensitive detection of biomolecules directly in biological samples in a single step. Thermally blocked nanoparticles obtained by thermal hydrolysis are mixed with sample solutions and the variation of the magnetic relaxation due to surface binding is used to detect the presence of biomolecules. The binding events significantly increase the hydrodynamic volume of nanoparticles, thus changing their Brownian relaxation frequency which is measured by a specifically developed AC-susceptometer.The system was tested for the presence of Brucella antibodies in serum samples from infected cows and the surface of the nanoparticles was functionalized with lipopolysaccarides (LPS) from Brucella abortus. The hydrodynamic volume of functionalized particles increased by 25-35% as a result of the binding of the antibodies, as measured by changes in the susceptibility in an alternating magnetic field. The method has shown high sensitivity, with detection limit of 7 nmol·L-1 in serum without any pre-treatment of the biological samples.The detection method is very sensitive, cost-efficient and versatile, giving a direct indication if the animal is infected or not, making it suitable for point-of care applications. The functionalization of tailored magnetic nanoparticles can be modified to suit numerous homogenous assays for a wide range of applications.
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| 8. |
- Jonasson, Christian, et al.
(författare)
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Utvärdering av onlinesystem för tidig varning av fekal påverkan i råvatten. Baserad på interferensmodulerad flödescytometri
- 2015
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Projektet har utvärderat ny mätteknik för att man snabbare ska kunna upptäcka påverkan av fekalier på råvatten. E. coli har använts som indikatorbakterie. Det använda instrumentet har stor potential att mäta halten E.colii råvatten online, och lämpar sig därför bra som ett tidigt varningssystem.Online-mätning av råvattenkvaliteten kan förhindra vattenburen smitta,något som är intressant för både dricksvattenproducenter och samhället istort.Metoden baseras på att bakterier märks med antikroppar som har fluorescenstaggats med en molekyl som gör att de efter bestrålning sänder utkortvarigt ljus. Ett optiskt instrument har utvecklats för att räkna enstakabakterier i ett provflöde. Mätsystemet har konstruerats för att dels matchaen industriell miljö, dels hålla nere kostnaden för att göra instrumentet ekonomiskt rimligt för aktörer inom dricksvattenproduktionDe fluorescerande markörerna skickar ut ljus som uppfångas av en detektor. Ursprungligen valdes markörerna för att skicka ut ljus i det synliga området. Men det visade sig att bakgrundsfluorescensen i det synliga området varhög, från klorofyll i alger och cyanobakterier. Därför beslutade projektgruppen att i stället välja markörer som fluorescerade i nära infraröda våglängder.Bytet av våglängdsområde löste problemen med bakgrundsfluorescens ochär ett avgörande steg mot ett fungerande instrument. Men anpassningen avoptiken för det nya våglängdsområdet medförde nya utmaningar, särskilt pådetektorsidan.Fälttester som genomfördes på Överby Vattenverk i Trollhättan visade attinstrumentet fungerar bra i den industriella miljön, och man kunde kopplain det mot en råvattenledning. Mätningar utförda i labb på råvatten ochrenat avloppsvatten visade på tydliga skillnader i koncentrationen av E. coli,men i de flesta fall var den uppmätta halten lägre än förväntat.Den kanske största begränsningen med den nya mättekniken är att få entillräckligt hög genomströmning av vattenprov i instrumentet. Detta är viktigt för att få en bra uppskattning av koncentrationen E. coli inom rimlig tid(minuter). Man kan öka genomflödet genom att öka dimensionen hos denoptiska flödeskanalen. Nackdelen är att känsligheten minskar. I en störreflödeskanal tittar man på ett större område och signalen från en enstakabakterie gentemot bakgrunden blir mindre. Här finns en viktig avvägningför framtida utveckling.Projektet har letts av Trollhättan Energi i samarbete med Göteborgs stad,Norrvatten, Vivab och DRICKS-programmet på Chalmers. Större delen avutvecklingsarbetet har utförts av Acreo Swedish ICT. Projektet har ingåttsom en del i ett större Vinnovafinansierat projekt inom utmaningsdriveninnovation med titeln Online sensorsystem för resurseffektiv vattenhantering (SENSATION) som avslutades 2014 och var fokuserat på en helhetslösning för mätning av vattenkvalitet.
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| 9. |
- Jonsson, Per, et al.
(författare)
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Svenskt Vatten Utveckling Elektronisk tunga och andra onlinesensorer för detektion av föroreningar i dricksvattennätet – en utvärdering
- 2018
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Projektet har utvärderat olika onlinesensorer för att upptäcka föroreningar från avloppsvatten i dricksvattennätet. Flera kommersiella sensorer kunde detektera inläckage vid koncentrationer av avloppsvatten på cirka 0,7 procent, men bäst var den nyutvecklade sensor som kallas elektronisk tunga. Den kunde med låg sannolikhet för falsklarm detektera ner till åtminstone 0,05 procent avloppsvatten. Vanliga problem som kan ge upphov till smitta via dricksvatten är gamla och läckande ledningsnät som ger tryckfall, eller felaktiga kopplingar som gör att ytvatten och avloppsvatten kan förorena dricksvattnet. Risken för inläckage av avloppsvatten ansågs i projektet vara det högst prioriterade scenariot. Med ett nätverk av sensorer i dricksvattennätet och ett effektivt övervakningssystem skulle man kunna upptäcka och lokalisera föroreningskällan och ingripa med nödvändiga åtgärder innan det förorenade vattnet når kunderna.Projektet utfördes av Tekniska verken i Linköping i samverkan med Totalförsvarets forskningsinstitut (FOI) och ett stort antal andra aktörer. I en referensgrupp ingick ett antal svenska dricksvattenproducenter som ställde upp viktiga kriterier för onlinesensorer i dricksvattennätet. Sensorerna ska vara billiga, robusta, driftsäkra, anpassade för driftmiljön och kräva lite underhåll. De ska inte behöva förbehandling eller reagenser och bör helst mäta direkt på det trycksatta nätet. De bör helst vara generella, det vill säga upptäcka alla typer av föroreningar, men det är ett stort mervärde om de kan klassificera typen av förorening. Den elektroniska tungan har vidareutvecklats inom Vinnovaprojektet Sensation III. Även de nya sensorerna flödescytometer och elektronisk näsa testades i projektet, liksom standardsensorer för konduktivitet, pH och kloröverskott, samt en avancerad sensor baserad på optisk absorbans. Testerna skedde i en rigg på avloppsreningsverket i Linköping under ett par månader då olika koncentrationer av avloppsvatten tillfördes. Även syntetiskt avloppsvatten och råvatten tillfördes vid några tillfällen. Två elektroniska tungor testades även vid en tryckstegringsstation respektive vid vattentornet under cirka ett år. Olika typer av signalbehandling undersöktes för att optimera larmalgoritmerna.Resultaten visar att det är möjligt att upptäcka inläckage av avloppsvatten i dricksvattnet med hjälp av onlinesensorer. Även standardsensorer för konduktivitet och pH kunde detektera inläckage av avloppsvatten, men bäst resultat gav den elektroniska tungan. Sensorn för optisk absorbans hade en detektionsgräns mellan den elektroniska tungan och standardsensorerna. I anläggningar med större utspädning av avloppsvattnet än i Linköping kommer sensorerna förmodligen att ha en högre detektionsgräns.För att det ska bli möjligt att övervaka dricksvattenkvaliteten med hjälp av onlinesensorer krävs det nära samverkan mellan sensortillverkare, dricksvattenproducenter och -distributörer, eftersom det behövs fortsatta tester och är så svårt att kravställa och bestämma prestandan för sensorerna för alla tänkbara vatten.
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| 10. |
- Mahdavi, Jafar, et al.
(författare)
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The blood group antigen binding activity of the Helicobacter pylori baba adhesin is regulated by local ph and redox potential
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- The blood group antigen hinding adhesin, BabA, which binds to fucosylated blood group antigens, such as the Lewis b (Leb) and H1 antigens constitutes one of the best recognized adhesin-receptor interactions that mediate adherence of Helicobacter pylori to the gastric epithelium. BabA belongs to a family of H. pylori outer membrane, proteins (HOPs), a group of some 30 proteins with most similar N- and C-terminal domains.We previously identified the babA1 and babA2 genes, where babA2 was found to encode the BabA adhesin in strain CCUG17875. Here, we confirmed the identity of the BabA protein by immunoblot-analysis, followed by MALDIT-OF MS analysis, which also provided molecular weight of the BabA polypeptide and the unique peptide sequences for BabA. Surprisingly, the BabA protein was found to be expressed 50-fold higher compared to the number of calculated bacterial Leb-binding sites.Furthermore, surface scan of the bacterial membrane by freeze fracture immuno-EM technique localized the BabA by immunogold labeling to the bacterial surface in numbers similar to the predicted binding sites. To help explain the binding results, crosslinker-analyses were performed which revealed that BabA form supra-molecular complexes on the bacterial surfaces. In addition, binding to the Lewis b antigen was shown to be pH dependent and took place over a broad pH range but binding activity was reversibly lost when approaching pH 3, i.e. conditions similar to the acidic gastric juice.The binding activity of the BabA adhesin was shown to be sensitive for reducing conditions, which suggests the presence of disulfide bond(s) close to the carbohydrate-binding domain. The dynamics of BabA in Leb-binding suggest that the bacterial adhesin is regulated by local variations in pH and redox potential, such as the pH gradient in the slimy mucus lining of the epithelium, and the reduced conditions of the inflamed gastric mucosa.
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| 11. |
- Montagnoli, Antonio, et al.
(författare)
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Non-destructive phenotypic analysis of early stage tree seedling growth using an automated stereovision imaging method
- 2016
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Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- A plant phenotyping approach was applied to evaluate growth rate of containerized tree seedlings during the precultivation phase following seed germination. A simple and affordable stereo optical system was used to collect stereoscopic red-green-blue (RGB) images of seedlings at regular intervals of time. Comparative analysis of these images by means of a newly developed software enabled us to calculate (a) the increments of seedlings height and (b) the percentage greenness of seedling leaves. Comparison of these parameters with destructive biomass measurements showed that the height traits can be used to estimate seedling growth for needle-leaved plant species whereas the greenness trait can be used for broad-leaved plant species. Despite the need to adjust for plant type, growth stage and light conditions this new, cheap, rapid, and sustainable phenotyping approach can be used to study large-scale phenome variations due to genome variability and interaction with environmental factors.
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| 12. |
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| 13. |
- Prieto Astalan, A., et al.
(författare)
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Magnetic response of thermally blocked magnetic nanoparticles in a pulsed magnetic field
- 2007
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Ingår i: Journal of Magnetism and Magnetic Materials. - : Elsevier BV. - 0304-8853 .- 1873-4766. ; 311:1, s. 166-70
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Tidskriftsartikel (refereegranskat)abstract
- In order to detect fast changes of the Brownian relaxation time due to reaction kinetics on the surface of magnetic particles or particle-clustering processes, we have developed a method that uses pulsed magnetic fields and detects the relaxation of the magnetic response on the time scale of milliseconds. We compared measurements in the frequency domain with the time domain measurement using particle suspensions with three different median sizes. The results obtained with the two methods agreed well. Time domain determination of Brownian relaxation was then used to study the reaction kinetics of the clustering process when sodium chloride solution was added to a magnetic nanoparticle suspension.
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| 14. |
- Roche, Niamh, 1969, et al.
(författare)
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Human gastric glycosphingolipids recognized by Helicobacter pylori vacuolating cytotoxin VacA.
- 2007
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Ingår i: Microbes and infection / Institut Pasteur. - : Elsevier BV. - 1286-4579. ; 9:5, s. 605-14
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Tidskriftsartikel (refereegranskat)abstract
- Many bacterial toxins utilize cell surface glycoconjugate receptors for attachment to target cells. In the present study the potential carbohydrate binding of Helicobacter pylori vacuolating cytotoxin VacA was investigated by binding to human gastric glycosphingolipids on thin-layer chromatograms. Thereby a distinct binding of the toxin to two compounds in the non-acid glycosphingolipid fraction was detected. The VacA-binding glycosphingolipids were isolated and characterized by mass spectrometry and proton NMR as galactosylceramide (Galbeta1Cer) and galabiosylceramide (Galalpha4Galbeta1Cer). Comparison of the binding preferences of the protein to reference glycosphingolipids from other sources showed an additional recognition of glucosylceramide (Glcbeta1Cer), lactosylceramide (Galbeta4Glcbeta1Cer) and globotriaosylceramide (Galalpha4Galbeta4Glcbeta1Cer). No binding to the glycosphingolipids recognized by the VacA holotoxin was obtained with a mutant toxin with deletion of the 37 kDa fragment of VacA (P58 molecule). Collectively our data show that the VacA cytotoxin is a glycosphingolipid binding protein, where the 37 kDa moiety is required for carbohydrate recognition. The ability to bind to short chain glycosphingolipids will position the toxin close to the cell membrane, which may facilitate toxin internalization.
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| 15. |
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| 16. |
- Rusu, Cristina, et al.
(författare)
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Miniaturized wireless water content and conductivity soil sensor system
- 2019
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Ingår i: Computers and Electronics in Agriculture. - : Elsevier B.V.. - 0168-1699 .- 1872-7107. ; 167
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Tidskriftsartikel (refereegranskat)abstract
- Obtaining more data for the research/studies of plants growing may be easier realized when suitable non-destructive detection methods are available. We are here presenting the development of a miniaturised, low-power, real-time, multi-parameter and cost-effective sensor for measurements in mini plugs (growth of seedling). The detection technique is based on measurement of electrical impedance at two frequencies for sensing two soil parameters, water content and water conductivity (dependent on e.g. total ions concentration). Electrical models were developed and comply with data at two frequencies. An easy and efficient calibration method for the sensor is established by using known liquids’ properties instead of various soil types. The measurements show a good correlation between the sensor's readings and the traditional soil testing. This soil sensor can easily send data wirelessly allowing for spot checks of substrate moisture levels throughout a greenhouse/field, and/or enable sensors to be buried inside the soil/substrate for long-term consecutive measurements.
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| 17. |
- Schanzenbach, Christoph, et al.
(författare)
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Preparation and characterisation of a sensing system for wireless pH measurements in vivo, in a rumen of a cow
- 2017
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Ingår i: Sensors and actuators. B, Chemical. - : Elsevier BV. - 0925-4005 .- 1873-3077. ; 242, s. 637-644
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Tidskriftsartikel (refereegranskat)abstract
- We describe a sensing system that is able to measure pH in-vivo, in the rumen of a cow, in real time. The sensing principle is based on gravimetric transduction using a magnetoelastic ribbon functionalized by pH-sensitive nanobeads that is placed in the rumen where it is actuated and read-out wirelessly. We describe a generic procedure that enables one to deposit monolayers or multilayers of nano- and micro beads onto virtually any substrate. The topography of the resulting layers as well as interlayer coverages were characterised using optical microscopy and scanning profilometry. First we determined performance of the system in-vitro, in phosphate-buffered saline, in McDougall's buffer and in a rumen fluid. Thereafter we also performed in-vivo measurements. Using buffers we determined pH response in the liquids both at the fundamental frequency of the functionalised foils, and at the 1st overtone. We argue that observed frequency changes vs pH are mainly due to changes of trapped liquid when the bead layers shrink or expand as a response to changed pH. The data obtained from the pH response of magnetoelastic foils at different bead coverages was modelled by a simple two-parameter model that corroborates this assumption.
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| 18. |
- Unemo, Magnus, et al.
(författare)
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The sialic acid binding SabA adhesin of Helicobacter pylori is essential for nonopsonic activation of human neutrophils.
- 2005
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Ingår i: The Journal of biological chemistry. - 0021-9258 .- 1083-351X. ; 280:15, s. 15390-7
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Tidskriftsartikel (refereegranskat)abstract
- Infiltration of neutrophils and monocytes into the gastric mucosa is a hallmark of chronic gastritis caused by Helicobacter pylori. Certain H. pylori strains nonopsonized stimulate neutrophils to production of reactive oxygen species causing oxidative damage of the gastric epithelium. Here, the contribution of some H. pylori virulence factors, the blood group antigen-binding adhesin BabA, the sialic acid-binding adhesin SabA, the neutrophil-activating protein HP-NAP, and the vacuolating cytotoxin VacA, to the activation of human neutrophils in terms of adherence, phagocytosis, and oxidative burst was investigated. Neutrophils were challenged with wild type bacteria and isogenic mutants lacking BabA, SabA, HP-NAP, or VacA. Mutant and wild type strains lacking SabA had no neutrophil-activating capacity, demonstrating that binding of H. pylori to sialylated neutrophil receptors plays a pivotal initial role in the adherence and phagocytosis of the bacteria and the induction of the oxidative burst. The link between receptor binding and oxidative burst involves a G-protein-linked signaling pathway and downstream activation of phosphatidylinositol 3-kinase as shown by experiments using signal transduction inhibitors. Collectively our data suggest that the sialic acid-binding SabA adhesin is a prerequisite for the nonopsonic activation of human neutrophils and, thus, is a virulence factor important for the pathogenesis of H. pylori infection.
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| 19. |
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| 20. |
- Åberg, Anna, et al.
(författare)
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Helicobacter pylori adapts to chronic infection and gastric disease via ph-responsive baba-mediated adherence
- 2017
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Ingår i: Cell Host and Microbe. - : Elsevier BV. - 1931-3128 .- 1934-6069. ; 21:3, s. 376-389
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Tidskriftsartikel (refereegranskat)abstract
- The BabA adhesin mediates high-affinity binding of Helicobacter pylori to the ABO blood group antigen-glycosylated gastric mucosa. Here we show that BabA is acid responsive-binding is reduced at low pH and restored by acid neutralization. Acid responsiveness differs among strains; often correlates with different intragastric regions and evolves during chronic infection and disease progression; and depends on pH sensor sequences in BabA and on pH reversible formation of high-affinity binding BabA multimers. We propose that BabA's extraordinary reversible acid responsiveness enables tight mucosal bacterial adherence while also allowing an effective escape from epithelial cells and mucus that are shed into the acidic bactericidal lumen and that bio-selection and changes in BabA binding properties through mutation and recombination with babA-related genes are selected by differences among individuals and by changes in gastric acidity over time. These processes generate diverse H. pylori subpopulations, in which BabA's adaptive evolution contributes to H. pylori persistence and overt gastric disease.
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