| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
- Agić, Heda, 1989-, et al.
(författare)
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Lateral growth of Late Pleistocene stromatolites from Walker Lake (Nevada) and proxy constraints on environmental change
- 2014
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Ingår i: 2014 GSA Annual Meeting in Vancouver. - : Geological Society of America. ; , s. 300-4-
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Konferensbidrag (refereegranskat)abstract
- Walker Lake, a terminal sodium bicarbonate lake in Western Nevada (Great Basin, USA) contains numerous carbonate structures, including stromatolites. The lake is a remnant of the larger Pleistocene Lake Lahontan system that has been isolated for the last ~12 ka. Stromatolites of unique macroscale morphology were collected at the ancient Lahontan shoreline during the 2014 International Geobiology Course.Initial observations of a stromatolite bed revealed a bowl-shaped carbonate framework composed of stacked, weakly laminated, vertical and horizontal petal-like structures with copious pore space. One laterally-oriented petal was taken off of the main structure and studied. Petrographical observations exhibit two types of alternating microfabrics and three transitions in microfabric. Both sparry crystal fans of calcite, and convex layers of fine micrite with occasional trapped crystals and fossils, were observed.Calibrated 14C ages (IntCal13) for the proximal and the distal end of the stromatolite are 35,540 YBP and 33,580 YBP, respectively. Clumped isotope (D47)-based estimates of temperature steadily increase throughout most of this interval, from the beginning of accretion, to the middle of the structure. By the distal end, values are at their peak, and at the tip temperatures decrease again. D47-temperatures correspond to microfabric, with textural changes associated with evidence for climatic fluctuations.We suggest the stromatolite formation may have been initiated during warmer intervals, induced by the chemical precipitation of calcite fans which served as a substrate for a biofilm growth. Microbial activity trapped the fine sediment and formed micrite. Colder conditions propagated fan precipitation. Microfabric alternation throughout the stromatolite records environmental change in the span of ca. 2000 years of Lake Lahontan history, likely in response to lake level fluctuations.
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