| 1. |
- Löfstrand, Stefan D., et al.
(författare)
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Phylogenetic relationships, infrageneric classification and species limits in the Neotropical genus Faramea (Coussareeae: Rubiaceae)
- 2021
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Ingår i: Botanical journal of the Linnean Society. - : Oxford University Press (OUP). - 0024-4074 .- 1095-8339. ; 197, s. 478-497
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Tidskriftsartikel (refereegranskat)abstract
- Faramea is characterized by white or blue, tetramerous corollas and blue-black, fleshy fruits with a single, large pyrene. Both infrageneric relationships and species boundaries are poorly understood in the genus. This study represents the first broad-scale phylogenetic study of Faramea, with 80 of the c. 170 species sampled, 24 by two or more specimens. We aimed to include specimens representing the entire geographical, morphological and ecological ranges of the genus. Morphological characters historically utilized to delimit infrageneric sections in Faramea (e.g. bract and pyrene forms) were also evaluated. Only one of the currently accepted infrageneric sections was recovered as monophyletic (within a complex of species from other sections) and none of the morphological features traditionally utilized to determine infrageneric relationships in the genus was found to be uniquely diagnostic of a larger clade. Some Faramea lineages appear to be geographically isolated, with several clades containing solely specimens collected in the Atlantic Forest biomes. Of the 24 species represented by at least two specimens, 11 were supported as monophyletic, ten as non-monophyletic and three were not resolved as either monophyletic nor non-monophyletic. The results of the present study constitute a good basis for future studies of taxonomy, biogeography and ecology of Faramea.
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| 2. |
- Löfstrand, Stefan D., et al.
(författare)
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Phylogeny and Generic Delimitations in the Sister Tribes Hymenodictyeae and Naucleeae (Rubiaceae)
- 2014
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Ingår i: Systematic Botany. - 0363-6445 .- 1548-2324. ; 39:1, s. 304-315
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Tidskriftsartikel (refereegranskat)abstract
- The Hymenodicteae-Naudeeae clade is a predominantly Paleotropical group with 220 species in 28 genera. The phylogertetic relationships and generic limits within Naucleeae have previously been assessed using combined molecular-morphological data, however the status of some genera remains questionable. The evolutionary relationships within Hymenodictyeae have never been investigated before. We performed phylogenetic analyses of the Hymenodictyeae-Naucleeae clade using nuclear [nrETS; nrITS] and chloroplast [ndhF; rbcL; rps16; trnT-F] data and a large sampling of both tribes. Our study supports the monophyly of the tribes, all subtribes of Naucleeae (Adininae, Breoniinae, Cephalanthinae, Corynantheinae, Mitragyninae, Naucleinae, and Uncariinae), and the Hymenodictyeae genera Hymenodictyon and Paracorynanthe. In Naucleeae, the monotypic genera Adinauclea, Metadina, and Pertusadina are nested within Adina, Mitragyna within Fleroya, Ludekia, Myrmeconauclea, and Ochreinauclea within Neonauclea, and Burttdavya and Sarcocephalus within Nauclea. Corynanthe and Pausinystalia are mutually paraphyletic. We provisionally maintain the current generic status of Neonauclea and its allied genera, pending further study. In sum, we recognize 17 genera in Naucleeae: Adina s. l., Breonadia, Breonia, Cephalanthus, Corynanthe s. l., Diyaminauclea, Gyrostipula, Janotia, Khasiaclunea, Ludekia, Mitragyna s. l., Myrmeconauclea, Nauclea s. l., Neolamarckia, Neonauclea, Ochreinauclea, and Uncaria. Five new combinations were made: Adina euryncha, Adina malaccensis, Corynanthe lane-poolei subsp. iturense, Corynanthe talbotii, and Nauclea nyasica.
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| 3. |
- Rose, Jeffrey P., et al.
(författare)
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Phylogeny, historical biogeography, and diversification of angiosperm order Ericales suggest ancient Neotropical and East Asian connections
- 2018
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Ingår i: Molecular Phylogenetics and Evolution. - : Elsevier BV. - 1055-7903 .- 1095-9513. ; 122, s. 59-79
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Tidskriftsartikel (refereegranskat)abstract
- Inferring interfamilial relationships within the eudicot order Ericales has remained one of the more recalcitrant problems in angiosperm phylogenetics, likely due to a rapid, ancient radiation. As a result, no comprehensive time-calibrated tree or biogeographical analysis of the order has been published. Here, we elucidate phylogenetic relationships within the order and then conduct time-dependent biogeographical and diversification analyses by using a taxon and locus-rich supermatrix approach on one-third of the extant species diversity calibrated with 23 macrofossils and two secondary calibration points. Our results corroborate previous studies and also suggest several new but poorly supported relationships. Newly suggested relationships are: (1) holoparasitic Mitrastemonaceae is sister to Lecythidaceae, (2) the clade formed by Mitrastemonaceae + Lecythidaceae is sister to Ericales excluding balsaminoids, (3) Theaceae is sister to the styracoids + sarracenioids + ericoids, and (4) subfamilial relationships with Ericaceae suggest that Arbutoideae is sister to Monotropoideae and Pyroloideae is sister to all subfamilies excluding Arbutoideae, Enkianthoideae, and Monotropoideae. Our results indicate Ericales began to diversify 110 Mya, within Indo-Malaysia and the Neotropics, with exchange between the two areas and expansion out of Indo-Malaysia becoming an important area in shaping the extant diversity of many families. Rapid cladogenesis occurred along the backbone of the order between 104 and 106 Mya. Jump dispersal is important within the order in the last 30 My, but vicariance is the most important cladogenetic driver of disjunctions at deeper levels of the phylogeny. We detect between 69 and 81 shifts in speciation rate throughout the order, the vast majority of which occurred within the last 30 My. We propose that range shifting may be responsible for older shifts in speciation rate, but more recent shifts may be better explained by morphological innovation.
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| 4. |
- Sharma, T., et al.
(författare)
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Development of Hillchol (R), a low-cost inactivated single strain Hikojima oral cholera vaccine
- 2020
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Ingår i: Vaccine. - : Elsevier BV. - 0264-410X. ; 38:50, s. 7998-8009
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Tidskriftsartikel (refereegranskat)abstract
- Cholera remains an important global health problem with up to 4 million cases and 140,000 deaths annually. Oral cholera vaccines (OCVs) are now a cornerstone of the WHOs "Ending Cholera - A Global Roadmap to 2030" global program for the eventual elimination of cholera. There are currently three WHO prequalified OCVs available, Dukoral (R), Shanchol (R) and Euvichol-Plus (R). These vaccines are effective but due to a multiple strain composition and two different methods of inactivation, are complex and costly to manufacture. We describe here the characterization and industrial scale development of Hillchol (R); a novel, likely affordable single-component OCV for low and middle-income countries. Hillchol (R) consists of formalin-inactivated bacteria of a stable recombinant Vibrio cholerae O1 El Tor Hikojima serotype strain expressing approximately 50% each of Ogawa and Inaba O1 LPS antigens. The novel OCV can be manufactured on an industrial scale at a low cost. Hillchol (R) was well tolerated in animal toxicology studies and shown to have non-inferior oral immunogenicity in mice for both intestinalmucosal and serological immune responses when compared with a WHO-prequalified OCV. The optimized production of this single component OCV will reduce cost of OCV production and thus substantially increase vaccine availability. Based on these results, Hillchol (R) has been produced at a GMP facility and used successfully for clinical phase I/II studies. (C) 2020 MSD Wellcome Trust Hilleman Laboratories Pvt Ltd. Published by Elsevier Ltd.
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