| 1. |
- Aguilera, Anabella, et al.
(författare)
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Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria
- 2023
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Ingår i: Environmental Microbiology. - Chichester : John Wiley & Sons. - 1462-2912 .- 1462-2920. ; 25:9, s. 1674-1695
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Tidskriftsartikel (refereegranskat)abstract
- Cluster 5 picocyanobacteria significantly contribute to primary productivity in aquatic ecosystems. Estuarine populations are highly diverse and consist of many co-occurring strains, but their physiology remains largely understudied. In this study, we characterized 17 novel estuarine picocyanobacterial strains. Phylogenetic analysis of the 16S rRNA and pigment genes (cpcBandcpeBA) uncovered multiple estuarine and freshwater-related clusters and pigment types. Assays with five representative strains (three phycocyanin rich and two phycoerythrin rich) under temperature (10–30°C), light(10–190 μmol photons m-2s-1), and salinity (2–14 PSU) gradients revealed distinct growth optima and tolerance, indicating that genetic variability was accompanied by physiological diversity. Adaptability to environmental conditions was associated with differential pigment content and photosynthetic performance. Amplicon sequence variants at a coastal and an offshore station linked population dynamics with phylogenetic clusters, supporting that strains isolated in this study represent key ecotypes within the Baltic Sea picocyanobacterial community. The functional diversity found within strains with the same pigment type suggests that understanding estuarine picocyanobacterial ecology requires analysis beyond the phycocyanin and phycoerythrin divide. This new knowledge of the environmental preferences in estuarine picocyanobacteria is important for understanding and evaluating productivity in current and future ecosystems.
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| 2. |
- Amnebrink, Dennis, et al.
(författare)
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Genome-resolved analysis reveals transcriptional transitions across seasons in Baltic Sea prokaryotes
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Microbial communities in surface waters of temperate seas are exposed to recurring annual seasonal variation in temperature and nutrient concentrations. To what extent bacterioplankton populations in natural communities alter their functional repertoire as a result of seasonal succession has not been thoroughly investigated. Here we use metatranscriptomics and leverage a comprehensive catalogue of metagenome-assembled genomes (MAGs) to follow gene expression in individual populations over a two-year time period at an offshore station in the Baltic Sea. We show that the collective expression of the MAGs changed in a consistent manner across seasons in the two years, forming clusters representing the four seasons, and that more than 80% of these displayed a recurring seasonal pattern. Furthermore, we found that the changes in expression could partly be explained by modulation of expression within the prokaryotic populations, since intra-population expression patterns also changed with season. Taken together, our results demonstrate how natural microbial populations alter their expression on the gene level, and how these changes drive large scale changes on both population and community level. This work aims to broaden the understanding of how microbes respond and adapt to their environment by preferentially altering their expressed genetic repertoire, and how microbial community dynamics can be explained through the gene expression of various populations constituting the community.
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| 3. |
- Amnebrink, Dennis, et al.
(författare)
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Seasonal dynamics and life cycle strategies of the cyanobacterium Aphanizomenon in the Baltic proper
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Aphanizomenon, together with Dolichospermum and Nodularia, constitute the major genera of bloom forming filamentous nitrogen fixing cyanobacteria in the Baltic Sea. Like the other genera, Aphanizomenon displays summer blooms that are highly variable in magnitude and duration but unlike the others it is considered a holoplanktonic species. Still, the molecular mechanisms enabling Aphanizomenon year-round presence in surface waters are currently unknown. Here we combine analysis of Aphanizomenon population dynamics at the Linnaeus Microbial Observatory (LMO) station in the Baltic Proper over nine years (2011-2019) with associated gene expression patterns during 2016-2017 to identify annual abundance, and metabolic and life cycle strategies. Aphanizomenon biomass showed large annual variability and a consistent biovolume peak in summer, with bloom intensity ranging from 78-1334 mm3 m-3. 16S rRNA gene amplicon sequence data showed that one Aphanizomenon amplicon sequence variant (ASV) dominated, and its relative abundance correlated with biovolume measurements. Metatranscriptomic reads that mapped to an Aphanizomenon metagenome- assembled genome (MAG) revealed annually repeating gene expression patterns, resulting in distinct gene expression profiles during different meteorological seasons. Genes encoding proteins involved in several important functional classes, e.g. carbon fixation, photosynthesis, and associated photopigments showed seasonal variation, but were detected year round. Other genes, particularly those involved in nitrogen fixation, were highly expressed in summer, while absent in winter. Vitamin metabolism and phosphorus scavenging genes were preferentially expressed during the colder periods of the annual cycle. Together, these data show that Aphanizomenon regulates the molecular machinery on the seasonal scale, providing context to the observed dynamics of Aphanizomenon in the Baltic Proper and a foundation for understanding the ecology of these cyanobacteria.
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| 4. |
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| 5. |
- Laber, Christien P., et al.
(författare)
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Seasonal and Spatial Variations in Synechococcus Abundance and Diversity Throughout the Gullmar Fjord, Swedish Skagerrak
- 2022
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Ingår i: Frontiers in Microbiology. - Lausanne : Frontiers Media S.A.. - 1664-302X. ; 13
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Tidskriftsartikel (refereegranskat)abstract
- The picophytoplankton Synechococcus is a globally abundant autotroph that contributes significantly to primary production in the oceans and coastal areas. These cyanobacteria constitute a diverse genus of organisms that have developed independent niche spaces throughout aquatic environments. Here, we use the 16S V3-V4 rRNA gene region and flow cytometry to explore the diversity of Synechococcus within the picophytoplankton community in the Gullmar Fjord, on the west coast of Sweden. We conducted a station-based 1-year time series and two transect studies of the fjord. Our analysis revealed that within the large number of Synechococcus amplicon sequence variants (ASVs; 239 in total), prevalent ASVs phylogenetically clustered with clade representatives in both marine subcluster 5.1 and 5.2. The near-surface composition of ASVs shifted from spring to summer, when a 5.1 subcluster dominated community developed along with elevated Synechococcus abundances up to 9.3 x 10(4) cells ml(-1). This seasonal dominance by subcluster 5.1 was observed over the length of the fjord (25 km), where shifts in community composition were associated with increasing depth. Unexpectedly, the community shift was not associated with changes in salinity. Synechococcus abundance dynamics also differed from that of the photosynthetic picoeukaryote community. These results highlight how seasonal variations in environmental conditions influence the dynamics of Synechococcus clades in a high latitude threshold fjord.
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| 6. |
- Martínez-García, Sandra, et al.
(författare)
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Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent
- 2022
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Ingår i: Frontiers in Microbiology. - : Frontiers Media S.A.. - 1664-302X. ; 13
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Tidskriftsartikel (refereegranskat)abstract
- Although free-living (FL) and particle-attached (PA) bacteria are recognized as ecologically distinct compartments of marine microbial food-webs, few, if any, studies have determined their dynamics in abundance, function (production, respiration and substrate utilization) and taxonomy over a yearly cycle. In the Baltic Sea, abundance and production of PA bacteria (defined as the size-fraction >3.0 mu m) peaked over 3 months in summer (6 months for FL bacteria), largely coinciding with blooms of Chitinophagales (Bacteroidetes). Pronounced changes in the growth efficiency (range 0.05-0.27) of FL bacteria (defined as the size-fraction <3.0 mu m) indicated the magnitude of seasonal variability of ecological settings bacteria experience. Accordingly, 16S rRNA gene analyses of bacterial community composition uncovered distinct correlations between taxa, environmental variables and metabolisms, including Firmicutes associated with elevated hydrolytic enzyme activity in winter and Verrucomicrobia with utilization of algal-derived substrates during summer. Further, our results suggested a substrate-controlled succession in the PA fraction, from Bacteroidetes using polymers to Actinobacteria and Betaproteobacteria using monomers across the spring to autumn phytoplankton bloom transition. Collectively, our findings emphasize pronounced seasonal changes in both the composition of the bacterial community in the PA and FL size-fractions and their contribution to organic matter utilization and carbon cycling. This is important for interpreting microbial ecosystem function-responses to natural and human-induced environmental changes.
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| 7. |
- Alegria Zufia, Javier, Ph.D. 1992-, et al.
(författare)
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Growth and mortality rates of picophytoplankton in the Baltic Sea Proper
- 2024
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Ingår i: Marine Ecology Progress Series. - Oldendorf : Inter-Research. - 0171-8630 .- 1616-1599. ; 735, s. 63-76
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Tidskriftsartikel (refereegranskat)abstract
- Picophytoplankton (<2 µm diameter), a diverse group of picocyanobacteria and photosynthetic picoeukaryotes, are significant contributors to primary production. Predatory mortality controls picophytoplankton biomass and thereby energy transfer in the marine food web. The 2 major pathways of picophytoplankton mortality are grazing and viral lysis. Grazing passes carbon directly to higher trophic levels, while lysis products are passed into the viral loop. Picophytoplankton are abundant in the Baltic Sea but little is known about their predatory mortality. Using a modification of the dilution approach, we calculated growth and mortality rates of picophytoplankton and studied the effect of predation on community structure during late August and September. The experiments were conducted coinciding with the peak in picophytoplankton abundance (similar to 10(5) cells ml(-1)) at the Linnaeus Microbial Observatory in the Baltic Sea Proper. The results showed that grazing is an important controller of picocyanobacteria and photosynthetic picoeukaryote populations, while no significant viral lysis effect was detected. Grazing on picocyanobacteria was proportional to growth rates, while grazing on photosynthetic picoeukaryotes exceeded growth. Selective grazing of phylogenetically distinct picocyanobacterial clades had a significant effect on community structure, suggesting that grazing has an impact on the seasonal dynamics of co-occurring clades. Picocyanobacteria had a higher carbon transfer contribution to higher trophic levels than photosynthetic picoeukaryotes at the time of the experiments. The study shows that picophytoplankton are important contributors to carbon cycling in the Baltic Sea microbial food web and should be considered for future ecological models.
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| 8. |
- Alegria Zufía, Javier, Ph.D. 1992-
(författare)
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Picophytoplankton seasonal dynamics in the Baltic Sea
- 2022
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Picophytoplankton (<2 μm diameter) is a diverse group of picocyanobacterial and photosynthetic picoeukaryotes (PPE).Picophytoplankton contribute significantly to total phytoplankton biomassand can dominate primary production in oceans, lakes and estuaries. In the estuarine Baltic Sea, the composition of picophytoplankton is linked to the north to south salinity gradient but knowledge of the seasonal dynamics interms of abundance, biomass and diversity is largely unknown. This thesis investigated the in situ dynamics, bottom up and top down controls of picocyanobacteria (SYN; consisting of primarily Synechococcus and Cyanobium among other genuses) and PPE at two sampling stations, one coastal and one offshore. Monitoring data over three years (2018-2020) showed high biomass contribution across all seasons. Picocyanobacterial peak abundances occurred from spring to summer at the coastal station and in late-summer to autumn at the offshore station (up to 4.7 × 105 cells mL-1).Differentiation of pigment populations showed that phycoerythrin rich(PE)-SYN was the main contributor to SYN abundances except at the coastalstation during summer, when PE-SYN and phycocyanin rich (PC)-SYN had equal contributions. PPE peak abundances occurred during late summer to autumn (up to 1.1 × 105 cells mL-1 cells ml-1). Temperature was linked topicophytoplankton growth and abundance, with PE-SYN, PCSYN and PPEadapted to different temperature ranges. Temperature also affected SYNnitrogen preference: SYN was nitrogen limited during early summer and at>15°C there was a preference for ammonium over nitrate. Clade A/B dominated the SYN community, except during summer at the coastal station when low nitrate and warm temperatures promoted S5.2 dominance. Grazing was observed to control SYN and PPE abundances and had an effect on the SYN community structure. Identification and laboratory experiments of key Synechococcus strains using a range of salinity, temperature and light conditions provided important insights into the physiological diversity of co-occurring ecotypes and links to the SYN dynamics that were observed in the field. In summary, this thesis provided novel information of picophytoplankton dynamics and community structure in the Baltic Sea. The results show that picophytoplankton play a relevant role in Baltic Sea and shows the importance of monitoring programs to understand picophytoplankton dynamics.
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| 9. |
- Alegria Zufia, Javier, Ph.D. 1992-, et al.
(författare)
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Seasonal dynamics in picocyanobacterial abundance and clade composition at coastal and offshore stations in the Baltic Sea
- 2022
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Ingår i: Scientific Reports. - London : Nature Publishing Group. - 2045-2322. ; 12:1
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Tidskriftsartikel (refereegranskat)abstract
- Picocyanobacteria (< 2 um in diameter) are significant contributors to total phytoplankton biomass. Due to the high diversity within this group, their seasonal dynamics and relationship with environmental parameters, especially in brackish waters, are largely unknown. In this study, the abundance and community composition of phycoerythrin rich picocyanobacteria (PE-SYN) and phycocyanin rich picocyanobacteria (PC-SYN) were monitored at a coastal (K-station) and at an offshore station (LMO; similar to 10 km from land) in the Baltic Sea over three years (2018-2020). Cell abundances of picocyanobacteria correlated positively to temperature and negatively to nitrate (NO3) concentration. While PE-SYN abundance correlated to the presence of nitrogen fixers, PC-SYN abundance was linked to stratification/shallow waters. The picocyanobacterial targeted amplicon sequencing revealed an unprecedented diversity of 2169 picocyanobacterial amplicons sequence variants (ASVs). A unique assemblage of distinct picocyanobacterial clades across seasons was identified. Clade A/B dominated the picocyanobacterial community, except during summer when low NO3, high phosphate (PO4) concentrations and warm temperatures promoted S5.2 dominance. This study, providing multiyear data, links picocyanobacterial populations to environmental parameters. The difference in the response of the two functional groups and clades underscore the need for further high-resolution studies to understand their role in the ecosystem.
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| 10. |
- Alegria Zufia, Javier, et al.
(författare)
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Seasonality of Coastal Picophytoplankton Growth, Nutrient Limitation, and Biomass Contribution
- 2021
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Ingår i: Frontiers in Microbiology. - Lausanne : Frontiers Media S.A.. - 1664-302X. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- Picophytoplankton in the Baltic Sea includes the simplest unicellular cyanoprokaryotes (Synechococcus/Cyanobium) and photosynthetic picoeukaryotes (PPE). Picophytoplankton are thought to be a key component of the phytoplankton community, but their seasonal dynamics and relationships with nutrients and temperature are largely unknown. We monitored pico- and larger phytoplankton at a coastal site in Kalmar Sound (K-Station) weekly during 2018. Among the cyanoprokaryotes, phycoerythrin-rich picocyanobacteria (PE-rich) dominated in spring and summer while phycocyanin-rich picocyanobacteria (PC-rich) dominated during autumn. PE-rich and PC-rich abundances peaked during summer (1.1 x 10(5) and 2.0 x 10(5) cells mL(-1)) while PPE reached highest abundances in spring (1.1 x 10(5) cells mL(-1)). PPE was the main contributor to the total phytoplankton biomass (up to 73%). To assess nutrient limitation, bioassays with combinations of nitrogen (NO3 or NH4) and phosphorus additions were performed. PE-rich and PC-rich growth was mainly limited by nitrogen, with a preference for NH4 at >15 degrees C. The three groups had distinct seasonal dynamics and different temperature ranges: 10 degrees C and 17-19 degrees C for PE-rich, 13-16 degrees C for PC-rich and 11-15 degrees C for PPE. We conclude that picophytoplankton contribute significantly to the carbon cycle in the coastal Baltic Sea and underscore the importance of investigating populations to assess the consequences of the combination of high temperature and NH4 in a future climate.
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| 11. |
- Andersson, Agneta, et al.
(författare)
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Influence of allochthonous dissolved organic matter on pelagic basal production in a northerly estuary
- 2018
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Ingår i: Estuarine, Coastal and Shelf Science. - : Elsevier. - 0272-7714 .- 1096-0015. ; 204, s. 225-235
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Tidskriftsartikel (refereegranskat)abstract
- Phytoplankton and heterotrophic bacteria are key groups at the base of aquatic food webs. In estuaries receiving riverine water with a high content of coloured allochthonous dissolved organic matter (ADOM), phytoplankton primary production may be reduced, while bacterial production is favoured. We tested this hypothesis by performing a field study in a northerly estuary receiving nutrient-poor, ADOM-rich riverine water, and analyzing results using multivariate statistics. Throughout the productive season, and especially during the spring river flush, the production and growth rate of heterotrophic bacteria were stimulated by the riverine inflow of dissolved organic carbon (DOC). In contrast, primary production and photosynthetic efficiency (i.e. phytoplankton growth rate) were negatively affected by DOC. Primary production related positively to phosphorus, which is the limiting nutrient in the area. In the upper estuary where DOC concentrations were the highest, the heterotrophic bacterial production constituted almost 100% of the basal production (sum of primary and bacterial production) during spring, while during summer the primary and bacterial production were approximately equal. Our study shows that riverine DOC had a strong negative influence on coastal phytoplankton production, likely due to light attenuation. On the other hand DOC showed a positive influence on bacterial production since it represents a supplementary food source. Thus, in boreal regions where climate change will cause increased river inflow to coastal waters, the balance between phytoplankton and bacterial production is likely to be changed, favouring bacteria. The pelagic food web structure and overall productivity will in turn be altered. (C) 2018 The Authors. Published by Elsevier Ltd.
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| 12. |
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| 13. |
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| 14. |
- Berner, Christoffer, et al.
(författare)
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Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea
- 2018
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Ingår i: Frontiers in Microbiology. - : Frontiers Media S.A.. - 1664-302X. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Frequencies and biomass of Baltic Sea cyanobacterial blooms are expected to be higher in future climate conditions, but also of longer duration as a result of increased sea surface temperature. Concurrently, climate predictions indicate a reduced salinity in the Baltic Sea. These climate-driven changes are expected to alter not solely the phytoplankton community but also the role of microbial communities for nutrient remineralization. Here, we present the response of summer plankton communities (filamentous cyanobacteria, picocyanobacteria, and heterotrophic bacteria) to the interplay of increasing temperature (from 16 to 18 degrees C and 20 degrees C) and reduced salinity (from salinity 6.9 to 5.9) in the Baltic Proper (NW Gotland Sea) using a microcosm approach. Warmer temperatures led to an earlier peak of cyanobacterial biomass, while yields were reduced. These conditions caused a decrease of nitrogen-fixers (Dolichospermum sp.) biomass, while non nitrogen-fixers (Pseudanabaena sp.) increased. Salinity reduction did not affect cyanobacterial growth nor community composition. Among heterotrophic bacteria, Actinobacteria showed preference for high temperature, while Gammaproteobacteria thrived at in situ temperature. Heterotrophic bacteria community changed drastically at lower salinity and resembled communities at high temperature. Picocyanobacteria and heterotrophic bacterial biomass had a pronounced increase associated with the decay of filamentous cyanobacteria. This suggests that shifts in community composition of heterotrophic bacteria are influenced both directly by abiotic factors (temperature and salinity) and potentially indirectly by cyanobacteria. Our findings suggest that at warmer temperature, lower yield of photosynthetic cyanobacteria combined with lower proportion of nitrogen-fixers in the community could result in lower carbon export to the marine food web with consequences for the decomposer community of heterotrophic bacteria.
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| 15. |
- Broman, Elias, 1985-, et al.
(författare)
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Eutrophication induced early stage hypoxic ‘dead zone’ sediment releases nitrate and stimulates growth of archaea
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- In the Baltic Sea, two annual algal blooms occur in spring and summer. The bloom intensity is determined by nutrient concentrations in the water column, while the period depends on weather conditions. During the course of the bloom, dead cells sink to the sediment where their degradation consumes oxygen to create hypoxic zones (< 2 mg/L dissolved oxygen, referred to as ‘dead zones’). These zones prevent the establishment of benthic communities and result in fish mortality. The aim of the study was to determine how the sediment chemistry and microbial community composition changed due to phytoplankton biomass degradation by adding cyanobacterial or diatom biomass to sediment cores from an all-year round oxic coastal Baltic Sea bay. After biomass addition, some typical anaerobic microbial processes were observed such as a decrease in NO2-+NO3- in the sediment surface (0-1 cm) and iron in the underlying layer (1-2 cm). In addition, an increase in NO2-+NO3- was observed in the water phase in all incubations (including controls without addition of phytoplankton biomass). The combination of NO2-+NO3- diffusion from the sediment plus nitrification of the available NH4+ could not account for this increase. Potential nitrogen sources that could at least partially explain this discrepancy included microbial nitrogen fixation and cycling of nitrogen compounds from deeper layers of the sediment. Based on 16S rRNA gene sequences, the addition of diatom biomass caused minor changes in the relative abundance of microbial community members while cyanobacterial biomass caused a large increase in ferrous iron-oxidizing archaea. Considering that OTUs sharing lineages with acidophilic microorganisms were present, it was suggested that specific niches developed in sediment microenvironments. These findings highlight the importance of nitrogen cycling in oxic sediments and early microbial community changes in the sediment surface due to sinking phytoplankton before major hypoxia events occur. The release of nitrate into the water could potentially enhance algal blooms and facilitate the development of ‘dead zones’.
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| 16. |
- Broman, Elias, 1985-, et al.
(författare)
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Spring and Late Summer Phytoplankton Biomass Impact on the Coastal Sediment Microbial Community Structure
- 2019
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Ingår i: Microbial Ecology. - : Springer. - 0095-3628 .- 1432-184X. ; 77:2, s. 288-303
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Tidskriftsartikel (refereegranskat)abstract
- Two annual Baltic Sea phytoplankton blooms occur in spring and summer. The bloom intensity is determined by nutrient concentrations in the water, while the period depends on weather conditions. During the course of the bloom, dead cells sink to the sediment where their degradation consumes oxygen to create hypoxic zones (< 2 mg/L dissolved oxygen). These zones prevent the establishment of benthic communities and may result in fish mortality. The aim of the study was to determine how the spring and autumn sediment chemistry and microbial community composition changed due to degradation of diatom or cyanobacterial biomass, respectively. Results from incubation of sediment cores showed some typical anaerobic microbial processes after biomass addition such as a decrease in NO2− + NO3− in the sediment surface (0–1 cm) and iron in the underlying layer (1–2 cm). In addition, an increase in NO2− + NO3− was observed in the overlying benthic water in all amended and control incubations. The combination of NO2− + NO3− diffusion plus nitrification could not account for this increase. Based on 16S rRNA gene sequences, the addition of cyanobacterial biomass during autumn caused a large increase in ferrous iron-oxidizing archaea while diatom biomass amendment during spring caused minor changes in the microbial community. Considering that OTUs sharing lineages with acidophilic microorganisms had a high relative abundance during autumn, it was suggested that specific niches developed in sediment microenvironments. These findings highlight the importance of nitrogen cycling and early microbial community changes in the sediment due to sinking phytoplankton before potential hypoxia occurs.
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| 17. |
- Bunse, Carina, et al.
(författare)
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High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities
- 2019
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Ingår i: Frontiers in Microbiology. - : Frontiers Media S.A.. - 1664-302X. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Marine bacterioplankton are essential in global nutrient cycling and organic matter turnover. Time-series analyses, often at monthly sampling frequencies, have established the paramount role of abiotic and biotic variables in structuring bacterioplankton communities and productivities. However, fine-scale seasonal microbial activities, and underlying biological principles, are not fully understood. We report results from four consecutive years of high-frequency time-series sampling in the Baltic Proper. Pronounced temporal dynamics in most investigated microbial variables were observed, including bacterial heterotrophic production, plankton biomass, extracellular enzyme activities, substrate uptake rate constants of glucose, pyruvate, acetate, amino acids, and leucine, as well as nutrient limitation bioassays. Spring blooms consisting of diatoms and dinoflagellates were followed by elevated bacterial heterotrophic production and abundances. During summer, bacterial productivity estimates increased even further, coinciding with an initial cyanobacterial bloom in early July. However, bacterial abundances only increased following a second cyanobacterial bloom, peaking in August. Uptake rate constants for the different measured carbon compounds varied seasonally and inter-annually and were highly correlated to bacterial productivity estimates, temperature, and cyanobacterial abundances. Further, we detected nutrient limitation in response to environmental conditions in a multitude of microbial variables, such as elevated productivities in nutrient bioassays, changes in enzymatic activities, or substrate preferences. Variations among biotic variables often occurred on time scales of days to a few weeks, yet often spanning several sampling occasions. Such dynamics might not have been captured by sampling at monthly intervals, as compared to more predictable transitions in abiotic variables such as temperature or nutrient concentrations. Our study indicates that high resolution analyses of microbial biomass and productivity parameters can help out in the development of biogeochemical and food web models disentangling the microbial black box.
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| 18. |
- Fridolfsson, Emil, et al.
(författare)
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Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper
- 2023
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Ingår i: Scientific Reports. - London : Springer Nature. - 2045-2322. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- The planktonic realm from bacteria to zooplankton provides the baseline for pelagic aquatic food webs. However, multiple trophic levels are seldomly included in time series studies, hampering a holistic understanding of the influence of seasonal dynamics and species interactions on food web structure and biogeochemical cycles. Here, we investigated plankton community composition, focusing on bacterio-, phyto- and large mesozooplankton, and how biotic and abiotic factors correlate at the Linnaeus Microbial Observatory (LMO) station in the Baltic Sea from 2011 to 2018. Plankton communities structures showed pronounced dynamic shifts with recurring patterns. Summarizing the parts of the planktonic microbial food web studied here to total carbon, a picture emerges with phytoplankton consistently contributing > 39% while bacterio- and large mesozooplankton contributed ~ 30% and ~ 7%, respectively, during summer. Cyanophyceae, Actinobacteria, Bacteroidetes, and Proteobacteria were important groups among the prokaryotes. Importantly, Dinophyceae, and not Bacillariophyceae, dominated the autotrophic spring bloom whereas Litostomatea (ciliates) and Appendicularia contributed significantly to the consumer entities together with the more traditionally observed mesozooplankton, Copepoda and Cladocera. Our findings of seasonality in both plankton composition and carbon stocks emphasize the importance of time series analyses of food web structure for characterizing the regulation of biogeochemical cycles and appropriately constraining ecosystem models.
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| 19. |
- Fridolfsson, Emil, et al.
(författare)
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Thiamin (vitamin B1) content in phytoplankton and zooplankton in the presence of filamentous cyanobacteria
- 2018
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Ingår i: Limnology and Oceanography. - : John Wiley & Sons. - 0024-3590 .- 1939-5590. ; 63:6, s. 2423-2435
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Tidskriftsartikel (refereegranskat)abstract
- Top predators in several aquatic food webs regularly display elevated reproductive failure, caused by thiamin(vitamin B1)deficiency. The reasons for these low-thiamin levels are not understood and information about the transfer of thiamin from the producers (bacteria and phytoplankton) to higher trophic levels is limited. One main concern is whether cyanobacterial blooms could negatively affect thiamin transfer in aquatic systems. Laboratory experiments with Baltic Sea plankton communities and single phytoplankton species were used to study the effect of filamentous cyanobacteria on the transfer of thiamin from phytoplankton to zooplankton. Experiments showed that the thiamin content in copepods was reduced when exposed to elevated levels of cyanobacteria, although filamentous cyanobacteria had higher levels of thiamin than any other analyzed phytoplankton species. Filamentous cyanobacteria also had a negative effect on copepod egg production despite high concentrations of non-cyanobacterial food. Phytoplankton species composition affected overall thiamin concentration with relatively more thiamin available for transfer when the relative abundance of Dinophyceae was higher. Finally, phytoplankton thiamin levels were lower when copepods were abundant, indicating that grazers affect thiamin levels in phytoplankton community, likely by selective feeding. Overall, high levels of thiamin in phytoplankton communities are not reflected in the copepod community. We conclude that presence of filamentous cyanobacteria during summer potentially reduces the transfer of thiamin to higher trophic levels by negatively affecting phytoplankton and copepod thiamin content as well as copepod reproduction, thereby lowering the absolute capacity of the food web to transfer thiamin through copepods to higher trophic levels.
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| 20. |
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| 21. |
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| 22. |
- Laber, Christien P., et al.
(författare)
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Colony-forming and single-cell picocyanobacteria nitrogen acquisition strategies and carbon fixation in the brackish Baltic Sea
- 2024
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Ingår i: Limnology and Oceanography. - Hoboken, NJ : John Wiley & Sons. - 0024-3590 .- 1939-5590.
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Tidskriftsartikel (refereegranskat)abstract
- Picocyanobacteria are widespread and globally significant primary producers. In brackish waters, picocyanobacterial populations are composed of diverse species with both single-cell and colony-forming lifestyles. Compared to their marine counterparts, brackish picocyanobacteria are less well characterized and the focus of research has been weighted toward single-cell picocyanobacteria. Here, we investigate the uptake dynamics of single and colony-forming picocyanobacteria using incubations with dual carbon-13 and inorganic (ammonium and nitrate) or organic (urea and amino acids) nitrogen-15 sources during August and September 2020 in the central Baltic Sea. Phytoplankton community and group-specific uptake rates were obtained using an elemental analyzer isotope ratio mass spectrometer (EA-IRMS) and nano secondary-ion mass spectrometry (NanoSIMS). Picocyanobacteria contributed greater than one third of the ammonium, urea, amino acids, and inorganic carbon community uptake/fixation in September but < 10% in August when phytoplankton biomass was higher. Overall, single-cell ammonium and urea uptake rates were significantly higher for single-celled compared to colonial picocyanobacteria. In a 6-yr offshore central Baltic Sea time series (2015-2020), summer abundances of colonial picocyanobacteria reached up to 10(5) cells mL(-1) and represented > 5% of the average phytoplankton biomass, suggesting that they are periodically important for the ecosystem. Colonial strain identification was not distinguishable using 16S rRNA gene amplicon data, highlighting a need for refined tools for identification of colonial forms. This study shows the significance of single-celled brackish picocyanobacteria to nutrient cycling and the importance of considering uptake and lifestyle strategies when assessing the role of picocyanobacteria in aquatic ecosystems.
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| 23. |
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| 24. |
- Legrand, Catherine, 1965-
(författare)
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Algoland Workshop : business models
- 2018
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Ingår i: Algoland 2030 Workshop, Kalmar, Sweden, April 24, 2018.
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)
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| 25. |
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| 26. |
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| 27. |
- Lindehoff, Elin, et al.
(författare)
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ALGOLAND : Industry and Ecology Together
- 2018
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Ingår i: Presented at the 1st Nordic Algae Symposium 2018 (NAS18), Helsinki, Finland, January 31, 2018.
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Konferensbidrag (populärvet., debatt m.m.)
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| 28. |
- Lindehoff, Elin, et al.
(författare)
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Biomass performance and stability of 5-year outdoor microalgal cultivation for CO2 removal from cement flue gas
- 2024
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Ingår i: Bioresource Technology Reports. - Oxford : Elsevier. - 2589-014X. ; 25, s. 1-11
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Tidskriftsartikel (refereegranskat)abstract
- The study evaluated removal of industrial CO2 from cement flue gas using algal cultivation. Local polycultures were grown in an up-scaled outdoor photobioreactor over 5 years in northern Europe. Algal biomass was harvested 2–3 times per week and the closed panel system was re-filled with seawater amended with nutrients. Flue gas was fed to the photobioreactor circulatory system in one direction or re-circulated. Removal efficiency of CO2 averaged 9 % in non-recirculation and 17 % in re-circulation modes and reached 20–60 % under best cultivation conditions. Recovery of carbon into algal biomass reached up to 10 g m2d−1 in non-recirculation mode. Biomass performance was explained by circulation mode and shift of polyculture traits. Stability of biomass quality was shown over seasons, with higher relative content of protein in autumn. Toxic elements in biomass were below legal thresholds for upcycling. The study shows feasibility of algal solutions for conversion of waste, applied in temperate climate. © 2023 The Authors
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| 29. |
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| 30. |
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| 31. |
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| 32. |
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| 33. |
- Mattsson, Lina, et al.
(författare)
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Functional Diversity Facilitates Stability Under Environmental Changes in an Outdoor Microalgal Cultivation System
- 2021
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Ingår i: Frontiers in Bioengineering and Biotechnology. - : Frontiers Media S.A.. - 2296-4185. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Functionally uniform monocultures have remained the paradigm in microalgal cultivation despite the apparent challenges to avoid invasions by other microorganisms. A mixed microbial consortium approach has the potential to optimize and maintain biomass production despite of seasonal changes and to be more resilient toward contaminations. Here we present a 3-year outdoor production of mixed consortia of locally adapted microalgae and bacteria in cold temperate latitude. Microalgal consortia were cultivated in flat panel photobioreactors using brackish Baltic Sea water and CO2 from a cement factory (Degerhamn, Cementa AB, Heidelberg Cement Group) as a sustainable CO2 source. To evaluate the ability of the microbial consortia to maintain stable biomass production while exposed to seasonal changes in both light and temperature, we tracked changes in the microbial community using molecular methods (16S and 18S rDNA amplicon sequencing) and monitored the biomass production and quality (lipid, protein, and carbohydrate content) over 3 years. Despite changes in environmental conditions, the mixed consortia maintained stable biomass production by alternating between two different predominant green microalgae (Monoraphidium and Mychonastes) with complementary tolerance to temperature. The bacterial population was few taxa co-occured over time and the composition did not have any connection to the shifts in microalgal taxa. We propose that a locally adapted and mixed microalgal consortia, with complementary traits, can be useful for optimizing yield of commercial scale microalgal cultivation.
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| 34. |
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| 35. |
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Mikroalger : – vår tids miljöhjältar
- 2020
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Konstnärligt arbeteabstract
- Utställningen Mikroalger - vår tids miljöhjältar visade forskningen inom projektet ALGOLAND ett projekt inom Linnéuniversitetets spetsforskning inom ekologi och evolutionsforskning. Inom Algoland undersöker forskare mikroalgers potential att rena luft och vatten som kommer från industrier. I projektet kombineras marinekologisk forskning med kompetens från industrin för att nå innovativa, hållbara lösningar som minskar utsläpp av koldioxid och närsalter. Samtidigt produceras viktiga produkter som djurfoder och biobränslen. Metoden har potential att bidra till sänkta växthusgasutsläpp i framtiden. Syftet med utställningen var att sprida kunskap om mikroalgers förmåga att rena luft och vatten samt bidra till en större medvetenhet kring vatten generellt. Målgrupper var befintliga och presumtiva studenter, anställda på Linnéuniversitetet, allmänhet samt skolbarn.
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| 36. |
- Nham, Quyen, et al.
(författare)
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Microalgal production and nutrient recovery under mixotrophic mode using cheese whey permeate
- 2024
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Ingår i: Bioresource Technology. - Amsterdam : Elsevier. - 0960-8524 .- 1873-2976. ; 410, s. 1-11
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Tidskriftsartikel (refereegranskat)abstract
- Mixotrophic microalgal solutions are efficient nutrient recovery methods, with potential to prolong the cultivation seasons in temperate climates. To improve operation sustainability, the study used landfill leachate for nitrogen source and whey permeate for phosphorus and organic carbon. A non-axenic polyculture, dominated by green algae, was cultivated in mixotrophic mode on glucose or whey permeate compared to a photoautotrophic control in outdoor pilot-scaled raceway ponds during Nordic spring and autumn. The whey permeate treatment had the highest algal growth rate and productivity (0.48 d−1, 183.8 mg L−1 d−1), nutrient removal (total nitrogen: 21.71 mg L−1 d−1, total phosphorus: 3.05 mg L−1 d−1) and recovery rate (carbon: 85.19 mg L−1 d−1, nitrogen: 17.01 mg L−1 d−1, phosphorus: 2.58 mg L−1 d−1). When grown in whey permeate, algal cultures demonstrated consistent productivity and biochemical composition in high (spring) and low light conditions (autumn), suggesting the feasibility of year-round production in Nordic conditions. © 2024 The Authors
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| 37. |
- Nham, Thi Quyen, et al.
(författare)
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Whey permeate as a phosphorus source for algal cultivation
- 2023
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Ingår i: Water environment research. - : John Wiley & Sons. - 1061-4303 .- 1554-7531. ; 95:4
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Tidskriftsartikel (refereegranskat)abstract
- Microalgal cultivation for biodiesel and feed requires recycled nutrient resources for a sustainable long-term operation. Whey permeate (WP) from dairy processing contains high organic load (lactose, oils, and proteins) and nitrogen (resources tested for microalgal cultivation) and organic phosphorus (P) that has not yet been tested as a P source for microalgal cultivation. We explored the potential of green algae strains (brackish) and polyculture (freshwater) in exploiting P from WP added to a medium based on either seawater (7 psu) or landfill leachate. Both strains showed a capacity of using organic P in WP with equal growth rates (0.94-1.12 d(-1)) compared with chemical phosphate treatments (0.88-1.07 d(-1)). The polyculture had comparable growth rate (0.25-0.57 d(-1)) and biomass yield (152.1-357.5 mg L-1) and similar or higher nutrient removal rate in the leachate-WP medium (1.3-6.4 mg L-1 day(-1) nitrogen, 0.2-1.1 mg L-1 day(-1) P) compared with the leachate-chemical phosphate medium (1.2-4.7 mg L-1 day(-1) nitrogen, 0.3-1.4 mg L-1 day(-1) P). This study showed that WP is a suitable P source for microalgal cultivation over a range of salinities. To date, this is the first study demonstrating that raw WP can replace mineral P fertilizer for algal cultivation. Practitioners PointsWhey permeate is a comparable phosphorus source to standard fertilizers used in algal cultivation.Green algae removed phosphorus effectively from whey permeate.Microalgal cultivation is a good approach for treatment of whey permeate in combination with a nitrogen-rich wastewater.
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| 38. |
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| 39. |
- Pérez Blanco, Eva, et al.
(författare)
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Population dynamics of dominant dinoflagellate species in the North Sea : in situ growth rates, photosynthetic potential, and losses due to parasitism
- 2024
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Ingår i: Harmful Algae. - : Elsevier. - 1568-9883 .- 1878-1470. ; 134
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Tidskriftsartikel (refereegranskat)abstract
- In the North Sea, Tripos and Dinophysis are commonly occurring mixotrophic planktonic dinoflagellate genera. In order to understand their bloom dynamics, an occurring bloom dominated by T. furca and D. norvegica was followed for several days. High cell abundances of these species were located to estimate: in situ growth rates from cell cycle analyses, depth distributions, growth rates sustained by photosynthesis, and parasite infection prevalence in all T. furca, T. fusus, D. norvegica and D. acuminata. Cell abundances were over 10000 cells L−1 for T. furca and up to 18000 cells L−1 for D. norvegica. Cells accumulated between 15-25 m depth and presented low specific in situ growth rates of 0.04-0.15 d−1 for T. furca and 0.02-0.16 d−1 for D. norvegica. Photosynthesis could sustain growth rates of 0.01-0.18 d−1 for T. furca and 0.02 to 0.14 d−1 for D. norvegica, suggesting that these species were relying mainly on photosynthesis. Parasite infections where generally low, with occasional high prevalence in D. norvegica (by Parvilucifera sp.) and T. fusus (by Amoebophrya sp.), while both parasites showed comparable prevalence in D. acuminata, which could offset in situ growth rates by parasite-induced host mortality. The restructuring effect of parasites on dinoflagellate blooms is often overlooked and this study elucidates their effect to cell abundances and their growth at the final stages of a bloom.
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| 40. |
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| 41. |
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| 42. |
- Rosenlund, Joacim, 1985-, et al.
(författare)
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The Circular Economy Business Model of Algoland
- 2019
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Ingår i: Iranica Journal of Energy and Environment (IJEE). - : International Digital Organization for Scientific Information (IDOSI). - 2079-2115 .- 2079-2123. ; 10:1, s. 33-37
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Tidskriftsartikel (refereegranskat)abstract
- In the Algoland project, microalgae are used to clean water and air from industry. This is built on a long standing collaboration between research, industry and society. In this way Algoland supports the transition to a circular economy by turning pollution into biomass and potential products. This paper evaluates the potential for microalgae as an ecosystem service in industries from a circular economy perspective. The business model canvas was used in a workshop with stakeholders and researchers to discuss the challenges and opportunities for an industrial platform. Results showed that the established canvas model needs to be complemented by circular models; in order to be able to include ecosystem services. In this paper a circular canvas model is developed to be used in similar approaches.
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| 43. |
- Sörenson, Eva, 1979-
(författare)
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Functional and structural characterizations of phytoplankton-bacteria interactions in response to environmental challenges
- 2020
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Microorganisms, such as phytoplankton and bacteria, make up ≈70% of aquatic biomass and contribute 50-85% of the oxygen in Earth’s atmosphere. The microbial loop concept and the discovery of the large diversity in microbial communities acknowledge that biotic interactions between microorganisms in addition to resource competition enable the recycling of energy and nutrients in aquatic food webs. In this thesis, I have studied interactions between phytoplankton and bacteria in three brackish systems of increasing complexity. Interactions were characterized in terms of structure and function, species-specificity aspects, influence on community resilience, and the link between interactions and cycling of energy and nutrients, using a combined approach of molecular techniques, morphology and biochemical analyses, and network analysis. Species-specific core microbiomes were identified in cultures of dinoflagellate isolates with varying genotypes or phenotypes, or from locations with varying levels of anthropogenic impact. We argue that the structure of phytoplankton-bacterial communities is influenced by predictable species-specific interactions, in addition to local abiotic conditions (such as salinity). When microalgal productivity exposed to seasonal variations in light and temperature was examined in photobioreactor polycultures, the stability of microalgal biomass linked to a high bacterial response diversity, primarily seen as shifts in taxonomy. When the structural and functional response of microalgae and bacteria to temperature shifts was coupled to resilience theories (adaptive cycles, panarchy and cross-scale resilience), results suggest that resilience was enabled through internal shifts in function and diversity within and across microalgal and bacterial levels, leading to maintenance of overall community function and diversity. Further, the results suggest that phytoplankton and bacteria in a coastal eutrophied location avoid competition for both energy and nutrients by resource partitioning, indicating that phytoplankton and bacteria might coexist more frequently in dynamic shallow coastal ecosystems than previously thought.The results from this thesis emphasize the importance of considering community interactions between phytoplankton and bacteria when studying aquatic microbial communities, both in cultures and in complex field environments.
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| 44. |
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| 45. |
- Sörenson, Eva, 1979-, et al.
(författare)
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Resource Partitioning Between Phytoplankton and Bacteria in the Coastal Baltic Sea
- 2020
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Ingår i: Frontiers in Marine Science. - : Frontiers Media S.A.. - 2296-7745. ; 7, s. 1-19
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Tidskriftsartikel (refereegranskat)abstract
- Eutrophication coupled to climate change disturbs the balance between competition and coexistence in microbial communities including the partitioning of organic and inorganic nutrients between phytoplankton and bacteria. Competition for inorganic nutrients has been regarded as one of the drivers affecting the productivity of the eutrophied coastal Baltic Sea. Yet, it is unknown at the molecular expression level how resources are competed for, by phytoplankton and bacteria, and what impact this competition has on the community composition. Here we use metatranscriptomics and amplicon sequencing and compare known metabolic pathways of both phytoplankton and bacteria co-occurring during a summer bloom in the archipelago of Åland in the Baltic Sea to examine phytoplankton bacteria resource partitioning. The expression of selected pathways of carbon (C), nitrogen (N), and phosphorus (P) metabolism varied over time, independently, for both phytoplankton and bacteria, indicating partitioning of the available organic and inorganic resources. This occurs regardless of eukaryotic plankton growth phase (exponential or stationary), based on expression data, and microbial community composition. Further, the availability of different nutrient resources affected the functional response by the bacteria, observed as minor compositional changes, at class level, in an otherwise taxonomically stable bacterial community. Resource partitioning and functional flexibility seem necessary in order to maintain phytoplankton-bacteria interactions at stable environmental conditions. More detailed knowledge of which organisms utilize certain nutrient species are important for more accurate projections of the fate of coastal waters.
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| 46. |
- Sörenson, Eva, 1979-, et al.
(författare)
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Temperature Stress Induces Shift From Co-Existence to Competition for Organic Carbon in Microalgae-Bacterial Photobioreactor Community : Enabling Continuous Production of Microalgal Biomass
- 2021
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Ingår i: Frontiers in Microbiology. - : Frontiers. - 1664-302X. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- To better predict the consequences of environmental change on aquatic microbial ecosystems it is important to understand what enables community resilience. The mechanisms by which a microbial community maintain its overall function, for example, the cycling of carbon, when exposed to a stressor, can be explored by considering three concepts: biotic interactions, functional adaptations, and community structure. Interactions between species are traditionally considered as, e.g., mutualistic, parasitic, or neutral but are here broadly defined as either coexistence or competition, while functions relate to their metabolism (e.g., autotrophy or heterotrophy) and roles in ecosystem functioning (e.g., oxygen production, organic matter degradation). The term structure here align with species richness and diversity, where a more diverse community is though to exhibit a broader functional capacity than a less diverse community. These concepts have here been combined with ecological theories commonly used in resilience studies, i.e., adaptive cycles, panarchy, and cross-scale resilience, that describe how the status and behavior at one trophic level impact that of surrounding levels. This allows us to explore the resilience of a marine microbial community, cultivated in an outdoor photobioreactor, when exposed to a naturally occurring seasonal stress. The culture was monitored for 6weeks during which it was exposed to two different temperature regimes (21 ± 2 and 11 ± 1°C). Samples were taken for metatranscriptomic analysis, in order to assess the regulation of carbon uptake and utilization, and for amplicon (18S and 16S rRNA gene) sequencing, to characterize the community structure of both autotrophs (dominated by the green microalgae Mychonastes) and heterotrophs (associated bacterioplankton). Differential gene expression analyses suggested that community function at warm temperatures was based on concomitant utilization of inorganic and organic carbon assigned to autotrophs and heterotrophs, while at colder temperatures, the uptake of organic carbon was performed primarily by autotrophs. Upon the shift from high to low temperature, community interactions shifted from coexistence to competition for organic carbon. Network analysis indicated that the community structure showed opposite trends for autotrophs and heterotrophs in having either high or low diversity. Despite an abrupt change of temperature, the microbial community as a whole responded in a way that maintained the overall level of diversity and function within and across autotrophic and heterotrophic levels. This is in line with cross-scale resilience theory describing how ecosystems may balance functional overlaps within and functional redundancy between levels in order to be resilient to environmental change (such as temperature).
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| 47. |
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