| 1. |
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| 2. |
- Forrest, ARR, et al.
(författare)
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A promoter-level mammalian expression atlas
- 2014
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 507:7493, s. 462-
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Tidskriftsartikel (refereegranskat)
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| 3. |
- Noguchi, S, et al.
(författare)
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FANTOM5 CAGE profiles of human and mouse samples
- 2017
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Ingår i: Scientific data. - : Springer Science and Business Media LLC. - 2052-4463. ; 4, s. 170112-
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Tidskriftsartikel (refereegranskat)abstract
- In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities.
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| 4. |
- Ramilowski, JA, et al.
(författare)
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Functional annotation of human long noncoding RNAs via molecular phenotyping
- 2020
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Ingår i: Genome research. - : Cold Spring Harbor Laboratory. - 1549-5469 .- 1088-9051. ; 30:7, s. 1060-1072
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Tidskriftsartikel (refereegranskat)abstract
- Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we systematically knocked down the expression of 285 lncRNAs in human dermal fibroblasts and quantified cellular growth, morphological changes, and transcriptomic responses using Capped Analysis of Gene Expression (CAGE). Antisense oligonucleotides targeting the same lncRNAs exhibited global concordance, and the molecular phenotype, measured by CAGE, recapitulated the observed cellular phenotypes while providing additional insights on the affected genes and pathways. Here, we disseminate the largest-to-date lncRNA knockdown data set with molecular phenotyping (over 1000 CAGE deep-sequencing libraries) for further exploration and highlight functional roles for ZNF213-AS1 and lnc-KHDC3L-2.
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| 5. |
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| 6. |
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| 7. |
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| 8. |
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| 9. |
- Baumann, I., et al.
(författare)
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Do cognitively stimulating activities affect the association between retirement timing and cognitive functioning in old age?
- 2022
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Ingår i: Ageing & Society. - : Cambridge University Press. - 0144-686X .- 1469-1779. ; 42:2, s. 306-330
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Tidskriftsartikel (refereegranskat)abstract
- In response to the rising financial pressure on old-age pension systems in industrialised economies, many European countries plan to increase the eligibility age for retirement pensions. We used data from Sweden to examine whether (and if so, how) retirement after age 65 - the eligibility age for basic pension - compared to retiring earlier affects older adults' (between ages 70 and 85) cognitive functioning. Using a propensity score matching (PSM) approach, we addressed the selection bias potentially introduced by non-random selection into either early or late retirement. We also examined average and heterogeneous treatment effects (HTEs). HTEs were evaluated for different levels of cognitive stimulation from occupational activities before retirement and from leisure activities after retirement. We drew from a rich longitudinal data-set linking two nationally representative Swedish surveys with a register data-set and found that, on average, individuals who retire after age 65 do not have a higher level of cognitive functioning than those who retire earlier. Similarly, we did not observe HTEs from occupational activities. With respect to leisure activities, we found no systematic effects on cognitive functioning among those working beyond age 65. We conclude that, in general, retirement age does not seem to affect cognitive functioning in old age. Yet, the rising retirement age may put substantial pressure on individuals who suffer from poor health at the end of their occupational career, potentially exacerbating social- and health-related inequalities among older people.
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| 10. |
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| 11. |
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| 12. |
- Lennartsson, Anders, 1980, et al.
(författare)
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Reversible Guest Binding in a Non-Porous FeII Coordination Polymer Host Toggles Spin Crossover
- 2015
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Ingår i: Chemistry - A European Journal. - : Wiley. - 1521-3765 .- 0947-6539. ; 21:45, s. 16066-16072
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Tidskriftsartikel (refereegranskat)abstract
- Formation of either a dimetallic compound or a 1D coordination polymer of adiponitrile adducts of [Fe(bpte)]2+ (bpte=[1,2-bis(pyridin-2-ylmethyl)thio]ethane) can be controlled by the choice of counteranion. The iron(II) atoms of the bis(adiponitrile)-bridged dimeric complex [Fe2(bpte)2(μ2-(NC(CH2)4CN)2](SbF6)4 (2) are low spin at room temperature, as are those in the polymeric adiponitrile-linked acetone solvate polymer {[Fe(bpte)(μ2-NC(CH2)4CN)](BPh4)2 Me2CO} (3Me2CO). On heating 3Me2CO to 80°C, the acetone is abruptly removed with an accompanying purple to dull lavender colour change corresponding to a conversion to a high-spin compound. Cooling reveals that the desolvate 3 shows hysteretic and abrupt spin crossover (SCO) S=0虠S=2 behaviour centred at 205K. Non-porous 3 can reversibly absorb one equivalent of acetone per iron centre to regenerate the same crystalline phase of 3Me2CO concurrently reinstating a low-spin state.
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| 13. |
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| 15. |
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| 16. |
- Skogar, O, et al.
(författare)
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"Effects of Tactile Touch on pain, sleep and health related quality of life in Parkinsons disease with chronic pain": A randomized, controlled and prospective study
- 2013
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Ingår i: European Journal of Integrative Medicine. - : Elsevier. - 1876-3820 .- 1876-3839. ; 5:2, s. 141-152
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Tidskriftsartikel (refereegranskat)abstract
- Introduction: Parkinsons disease (PD) is often associated with chronic PD related pain. Complementary medicine are widely used but randomized, controlled and prospective studies of the effects are sparse. less thanbrgreater than less thanbrgreater thanAims of the study: To compare the effects of Tactile Touch (TT) with Rest to Music (RTM) in PD patients with chronic pain and to describe effects within groups. less thanbrgreater than less thanbrgreater thanPatients and methods: A 34 week controlled randomized and prospective trial compared the effects of TT with RTM in 45 (29 TT and 16 RTM) patients with PD and chronic pain. The whole body tactile stimulation method was performed for each individual patient by the same therapist for 10 times during the first 8 weeks. The RTM group received the same therapy except for the tactile stimulation. Pharmacotherapy was kept unchanged. Participants were assessed at pre- and post-intervention for pain, sleep patterns and health related quality of life (HRQoL). less thanbrgreater than less thanbrgreater thanResults: Differences between TT and RTM groups were few. Total PDSS significantly improved within the TT but not in the RTM-group. No significant differences between groups were seen in pain parameters, although significant improvements were seen within the TT-group after the intervention period. There were significant improvements within both groups in HRQoL and between groups in the items physical role and social functioning 4 weeks after screening. less thanbrgreater than less thanbrgreater thanConclusions: No significant differences between the TT and RTM groups were seen. Only in single aspects did patients with PD and chronic pain have more benefit more from CAM therapy with TT in combination with RTM.
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| 17. |
- Skogar, Ö, et al.
(författare)
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Diurnal salivary cortisol concentrations in Parkinson’s disease: increased total secretion and morning cortisol concentrations
- 2011
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Ingår i: International Journal of General Medicine. - Macclesfield, UK : Dove Medical Press Ltd.. - 1178-7074. ; 18, s. 494-494
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Tidskriftsartikel (refereegranskat)abstract
- Background:Parkinson’s disease (PD) is a chronic neurodegenerative disorder. There is limited knowledge about the function of the hypothalamic-pituitary-adrenal axis in PD. The primary aim of this prospective study was to analyze diurnal salivary cortisol concentrations in patients with PD and correlate these with age, gender, body mass index (BMI), duration of PD, and pain. The secondary aim was to compare the results with a healthy reference group.Methods:Fifty-nine PD patients, 35 women and 24 men, aged 50–79 years, were recruited. The reference group comprised healthy individuals matched for age, gender, BMI, and time point for sampling. Salivary cortisol was collected at 8 am, 1 pm, and 8 pm, and 8 am the next day using cotton-based Salivette ®tubes and analyzed using Spectria®Cortisol I125. A visual analog scale was used for estimation of pain.Results:The median cortisol concentration was 16.0 (5.8–30.2) nmol/L at 8 am, 5.8 (3.0–16.4) at 1 pm, 2.8 (1.6–8.0) at 8 pm, and 14.0 (7.5–28.7) at 8 am the next day. Total secretion and rate of cortisol secretion during the day (8 am–8 pm) and the concentration of cortisol on the next morning were lower (12.5 nmol/L) in the reference group. No significant correlations with age, gender, BMI, duration of PD, Hoehn and Yahr score, Unified Parkinson’s Disease Rating Scale III score, gait, pain, or cortisol concentrations were found.Conclusion:The neurodegenerative changes in PD does not seem to interfere with the hypothalamic-pituitary-adrenal axis. Salivary cortisol concentrations in PD patients were increased in the morning compared with the reference group, and were not influenced by motor dysfunction, duration of disease, or coexistence of chronic or acute pain.
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| 18. |
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| 19. |
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| 20. |
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| 21. |
- Wu, X. P., et al.
(författare)
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Alternative Cytotoxic Effects of the Postulated IGF-IR Inhibitor Picropodophyllin In Vitro
- 2013
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Ingår i: Molecular Cancer Therapeutics. - : American Association for Cancer Research (AACR). - 1535-7163 .- 1538-8514. ; 12:8, s. 1526-1536
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Tidskriftsartikel (refereegranskat)abstract
- The insulin-like growth factor-1 (IGF-I) and its receptors play an important role in transformation and progression of several malignancies. Inhibitors of this pathway have been developed and evaluated but generally performed poorly in clinical trials, and several drug candidates have been abandoned. The cyclolignan picropodophyllin (PPP) has been described as a potent and selective IGF-IR inhibitor and is currently undergoing clinical trials. We investigated PPP's activity in panels of human cancer cell lines (e. g., esophageal squamous carcinoma cell lines) but found no effects on the phosphorylation or expression of IGF-IR. Nor was the cytotoxic activity of PPP related to the presence or spontaneous phosphorylation of IGF-IR. However, its activity correlated with that of known tubulin inhibitors, and it destabilized microtubule assembly at cytotoxic concentrations also achievable in patients. PPP is a stereoisomer of podophyllotoxin (PPT), a potent tubulin inhibitor, and an equilibrium between the two has previously been described. PPPcould thus potentially act as a reservoir for the continuous generation of low doses of PPT. Interestingly, PPP also inhibited downstream signaling from tyrosine kinase receptors, including the serine/threonine kinase Akt. This effect is associated with microtubule-related downregulation of the EGF receptor, rather than the IGF-IR. These results suggest that the cytotoxicity and pAkt inhibition observed following treatment with the cyclolignan PPP in vitro result from microtubule inhibition (directly or indirectly by spontaneous PPT formation), rather than any effect on IGF-IR. It is also suggested that PPT should be used as a reference compound in all future studies on PPP. (C)2013 AACR.
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| 22. |
- Asadollahzadeh, Mohammadtaghi, et al.
(författare)
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Application of Fungal Biomass for the Development of New Polylactic Acid-Based Biocomposites
- 2022
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Ingår i: Polymers. - : MDPI AG. - 2073-4360. ; 14:9
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Tidskriftsartikel (refereegranskat)abstract
- Fungal biomass (FB), a by-product of the fermentation processes produced in large volumes, is a promising biomaterial that can be incorporated into poly(lactic acid) (PLA) to develop enhanced biocomposites that fully comply with the biobased circular economy concept. The PLA/FB composites, with the addition of triethyl citrate (TEC) as a biobased plasticizer, were fabricated by a microcompounder at 150 °C followed by injection molding. The effects of FB (10 and 20 wt %) and TEC (5, 10, and 15 wt %) contents on the mechanical, thermal and surface properties of the biocomposites were analyzed by several techniques. The PLA/FB/TEC composites showed a rough surface in their fracture section. A progressive decrease in tensile strength and Young’s modulus was observed with increasing FB and TEC, while elongation at break and impact strength started to increase. The neat PLA and biocomposite containing 10% FB and 15% TEC exhibited the lowest (3.84%) and highest (224%) elongation at break, respectively. For all blends containing FB, the glass transition, crystallization and melting temperatures were shifted toward lower values compared to the neat PLA. The incorporation of FB to PLA thus offers the possibility to overcome one of the main drawbacks of PLA, which is brittleness.
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| 23. |
- Asadollahzadeh, Mohammadtaghi, et al.
(författare)
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Using spent sulfite liquor for valuable fungal biomass production by Aspergilus oryzae
- 2017
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Ingår i: Nordic Pulp & Paper Research Journal. - 0283-2631 .- 2000-0669. ; 32:4, s. 630-638
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Tidskriftsartikel (refereegranskat)abstract
- The recent and increasing interest in bioconversion of lignocellulosic wastes into value-added products has led to extensive research on various microorganisms and substrates. In this study, filamentous fungus Aspergillus oryzae was cultivated on spent sulfite liquor (SSL) from a pulp mill. The process using an airlift bioreactor (3.5 L working volume) was successfully carried out in 48 h with an airflow of 0.85 vvm (volume air per volume culture per minute) at 35°C and pH 5.5. The cultivation results showed that the fungal biomass concentration was higher in more diluted SSL. The highest and lowest fungal biomass concentrations when spore inoculation was used were 10.2 and 6.5 g/l SSL, in diluted SSL to 60 and 80%, respectively. The range of crude protein and total fat of the fungal biomass was 0.44 – 0.48 and 0.04 – 0.11 g/g biomass dry weight, respectively. All essential amino acids were present in acceptable quantities in the fungal biomass. The results obtained in this study have practical implications in that the fungus A. oryzae could be used successfully to produce fungal biomass protein using spent sulfite liquor for animal feed.
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| 24. |
- Bátori, Veronika, et al.
(författare)
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Ethanol and Protein from Ethanol Plant By-Products Using Edible Fungi Neurospora intermedia and Aspergillus oryzae
- 2015
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Ingår i: BioMed Research International. - : Hindawi Limited. - 2314-6133 .- 2314-6141. ; 2015:nov23
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Tidskriftsartikel (refereegranskat)abstract
- Feasible biorefineries for production of second-generation ethanol are difficult to establish due to the process complexity. An alternative is to partially include the process in the first-generation plants. Whole stillage, a by-product from dry-mill ethanol processes from grains, is mostly composed of undegraded bran and lignocelluloses can be used as a potential substrate for production of ethanol and feed proteins. Ethanol production and the proteins from the stillage were investigated using the edible fungi Neurospora intermedia and Aspergillus oryzae, respectively. N. intermedia produced 4.7 g/L ethanol from the stillage and increased to 8.7 g/L by adding 1 FPU of cellulase/g suspended solids. Saccharomyces cerevisiae produced 0.4 and 5.1 g/L ethanol, respectively. Under a two-stage cultivation with both fungi, up to 7.6 g/L of ethanol and 5.8 g/L of biomass containing 42% (w/w) crude protein were obtained. Both fungi degraded complex substrates including arabinan, glucan, mannan, and xylan where reductions of 91, 73, 38, and 89% (w/v) were achieved, respectively. The inclusion of the current process can lead to the production of 44,000 m(3) of ethanol (22% improvement), around 12,000 tons of protein-rich biomass for animal feed, and energy savings considering a typical facility producing 200,000 m(3) ethanol/year.
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| 25. |
- Bátori, Veronika, 1980-, et al.
(författare)
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Production of Pectin-Cellulose Biofilms: A New Approach for Citrus Waste Recycling
- 2017
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Ingår i: International Journal of Polymer Science. - : Hindawi Limited. - 1687-9422 .- 1687-9430. ; 2017, s. 1-9
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Tidskriftsartikel (refereegranskat)abstract
- While citrus waste is abundantly generated, the disposal methods used today remain unsatisfactory: they can be deleterious for ruminants, can cause soil salinity, or are not economically feasible; yet citrus waste consists of various valuable polymers. This paper introduces a novel environmentally safe approach that utilizes citrus waste polymers as a biobased and biodegradable film, for example, for food packaging. Orange waste has been investigated for biofilm production, using the gelling ability of pectin and the strength of cellulosic fibres. A casting method was used to form a film from the previously washed, dried, and milled orange waste. Two film-drying methods, a laboratory oven and an incubator shaker, were compared. FE-SEM images confirmed a smoother film morphology when the incubator shaker was used for drying. The tensile strength of the films was 31.67 ± 4.21 and 34.76 ± 2.64 MPa, respectively, for the oven-dried and incubator-dried films, which is within the range of different commodity plastics. Additionally, biodegradability of the films was confirmed under anaerobic conditions. Films showed an opaque appearance with yellowish colour.
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| 26. |
- Bátori, Veronika, 1980-, et al.
(författare)
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Synthesis and characterization of maleic anhydride-grafted orange waste for potential use in biocomposites
- 2018
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Ingår i: BioResources. - : BioResources. - 1930-2126. ; 13:3, s. 4986-4997
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Tidskriftsartikel (refereegranskat)abstract
- The purpose of the study was to develop a less hydrophilic, and therefore more useful, material from orange waste produced in large quantities by the food industry. A new derivative of industrial orange waste was synthesized via esterification with maleic anhydride. The reaction was confirmed via Fourier transform infrared spectroscopy (FTIR), and the degree of substitution of the hydroxyl groups was 0.39 ± 0.01, as determined by a back-titration method. A major change in physical structure was confirmed by scanning electron microscopy (SEM). The flake-like structure of orange waste changed to a sponge-like structure after the reaction, which involved an increased volume and a reduced density by approximately 40%. The sponge-like structure was represented as an agglomeration of particles with a low specific surface area of 2.18 m2/g and a mean pore diameter of 10.7 nm. Interestingly, the grafted orange waste seemed to become more hydrophobic, which was confirmed by a contact angle test; however, the material absorbed more water vapor. Thermogravimetric analysis (TGA) confirmed a thermally more uniform, though, less heat-resistant material. This work suggests a possible way of utilizing orange waste via synthesizing a renewable material with possible applications as a filler in biocomposites.
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| 27. |
- Bátori, Veronika, 1980-, et al.
(författare)
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The effect of glycerol, sugar and maleic anhydride on pectin-cellulose biofilms prepared from orange waste
- 2019
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Ingår i: Polymers. - : MDPI AG. - 2073-4360.
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Tidskriftsartikel (refereegranskat)abstract
- This study was conducted to improve the properties of thin films prepared from orange waste by the solution casting method. The main focus was the elimination of holes in the film structure by establishing better cohesion between the major cellulosic and pectin fractions. For this, a previously developed method was improved first by the addition of sugar to promote pectin gelling, then by the addition of maleic anhydride. Principally, maleic anhydride was introduced to the films to induce cross-linking within the film structure. The effects of concentrations of sugar and glycerol as plasticizers and maleic anhydride as a cross-linking agent on the film characteristics were studied. Maleic anhydride improved the structure, resulting in a uniform film, and morphology studies showed better adhesion between components. However, it did not act as a cross-linking agent, but rather as a compatibilizer. The middle level (0.78%) of maleic anhydride content resulted in the highest tensile strength (26.65 ± 3.20 MPa) at low (7%) glycerol and high (14%) sugar levels and the highest elongation (28.48% ± 4.34%) at high sugar and glycerol levels. To achieve a uniform film surface with no holes present, only the lowest (0.39%) level of maleic anhydride was necessary.
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| 28. |
- Claesson, A., et al.
(författare)
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Unmanned aerial vehicles (drones) in out-of-hospital-cardiac-arrest
- 2016
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Ingår i: Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine. - : BioMed Central (BMC). - 1757-7241. ; 24:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: The use of an automated external defibrillator (AED) prior to EMS arrival can increase 30-day survival in out-of-hospital cardiac arrest (OHCA) significantly. Drones or unmanned aerial vehicles (UAV) can fly with high velocity and potentially transport devices such as AEDs to the site of OHCAs. The aim of this explorative study was to investigate the feasibility of a drone system in decreasing response time and delivering an AED. Methods: Data of Global Positioning System (GPS) coordinates from historical OHCA in Stockholm County was used in a model using a Geographic Information System (GIS) to find suitable placements and visualize response times for the use of an AED equipped drone. Two different geographical models, urban and rural, were calculated using a multi-criteria evaluation (MCE) model. Test-flights with an AED were performed on these locations in rural areas. Results: In total, based on 3,165 retrospective OHCAs in Stockholm County between 2006-2013, twenty locations were identified for the potential placement of a drone. In a GIS-simulated model of urban OHCA, the drone arrived before EMS in 32 % of cases, and the mean amount of time saved was 1.5 min. In rural OHCA the drone arrived before EMS in 93 % of cases with a mean amount of time saved of 19 min. In these rural locations during (n = 13) test flights, latch-release of the AED from low altitude (3-4 m) or landing the drone on flat ground were the safest ways to deliver an AED to the bystander and were superior to parachute release. Discussion: The difference in response time for EMS between urban and rural areas is substantial, as is the possible amount of time saved using this UAV-system. However, yet another technical device needs to fit into the chain of survival. We know nothing of how productive or even counterproductive this system might be in clinical reality. Conclusions: To use drones in rural areas to deliver an AED in OHCA may be safe and feasible. Suitable placement of drone systems can be designed by using GIS models. The use of an AED equipped drone may have the potential to reduce time to defibrillation in OHCA.
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| 29. |
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| 30. |
- Erdi-Krausz, Gergo, et al.
(författare)
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Neonatal hypoxic-ischaemic encephalopathy : Motor impairment beyond cerebral palsy
- 2021
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Ingår i: European Journal of Paediatric Neurology. - : Elsevier BV. - 1090-3798. ; 35, s. 74-81
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Tidskriftsartikel (refereegranskat)abstract
- Background: Research investigating neuromotor function in the absence of cerebral palsy (CP) for children who had neonatal HIE is limited. Aims: To investigate school-age neurological and neuromotor function, and correlations with attention, neonatal Magnetic Resonance Imaging (MRI), and neuromotor assessments at toddler age. Methods: Twenty-seven children with neonatal HIE without CP who underwent hypothermia treatment and a comparison group of 20 children were assessed at age 5–7 years for Minor Neurological Dysfunction (MND; simplified Touwen), motor skills (Movement Assessment Battery for Children-2; MABC-2), parental concern over motor function (MABC Checklist), general cognition (Wechsler Preschool and Primary Scale of Intelligence-IV, WPPSI), and attention (DuPaul ADHD Rating Scale). Neurological examination and motor development, using Bayley-3 scales, at age 24-months was extracted from the clinical database. Clinical neonatal MRI was assessed for hypoxic-ischaemic injury. Results: In the HIE group, MND was more prevalent (p = 0.026) and M-ABC performance (total score p = 0.006; balance subtest p = 0.008) was worse; parents were more concerned about children's motor function (p = 0.011). HIE group inattention scores were higher (p = 0.032), which correlated with lower MABC-2 scores (rs = −0.590, p = 0.004). Neurological examination at 24-months correlated with MND (rs = 0.437, p = 0.033); Bayley-3 motor scores did not correlate with M-ABC-2 scores (rs = 368, p = 0.133). Neonatal MRI findings were not associated with school-age MND (rs = 0.140, p = 0.523) or MABC-2 (rs = 0.300, p = 0.165). Conclusions: Children with neonatal HIE, without CP, treated with hypothermia may be more likely to develop MND and motor difficulties than typically developing peers. Inattention may contribute to motor performance. In the absence of CP, neonatal MRI and toddler age assessment of motor development have limited predictive value for school-age outcome. Since this was an exploratory study with a small sample size, findings should be confirmed by a definite larger study.
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| 31. |
- Fazelinejad, Somayeh, et al.
(författare)
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Fungal biomass and ethanol from lignocelluloses using Rhizopus pellets under simultaneous saccharification, filtration, and fermentation (SSFF)
- 2016
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Ingår i: Biofuel Research Journal. - 2292-8782. ; 9, s. 372-378
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Tidskriftsartikel (refereegranskat)abstract
- The economic viability of the 2nd generation bioethanol production process cannot rely on a single product but on a biorefinery built around it. In this work, ethanol and fungal biomass (animal feed) were produced from acid-pretreated wheat straw slurry under an innovative simultaneous saccharification, fermentation, and filtration (SSFF) strategy. A membrane unit separated the solids from the liquid and the latter was converted to biomass or to both biomassand ethanol in the fermentation reactor containing Rhizopus sp. pellets. Biomass yields of up to 0.34 g/g based on the consumed monomeric sugars and acetic acid were achieved. A surplus of glucose in the feed resulted in ethanol production and reduced the biomass yield, whereas limiting glucose concentrations resulted in higher consumption of xylose and acetic acid. The specific growth rate, in the range of 0.013-0.015/h, did not appear to be influenced by the composition of the carbon source. Under anaerobic conditions, an ethanol yield of 0.40 g/g was obtained. The present strategy benefits fromthe easier separation of the biomass from the medium and the fungus ability to assimilate carbon residuals in comparison with when yeast is used. More specifically, it allows in-situ separation of insoluble solids leading to the production of pure fungal biomass as a value-added product. (C) 2016 BRTeam. All rights reserved.
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| 32. |
- FazeliNejad, Somayeh, et al.
(författare)
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Inhibitor Tolerance : A Comparison between Rhizopus sp. and Saccharomyces cerevisiae
- 2013
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Ingår i: BioResources. - : North Carolina State University. - 1930-2126. ; 8:4, s. 5524-5535
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Tidskriftsartikel (refereegranskat)abstract
- Zygomycetes fungi are able to produce ethanol, and their biomass may hold a high market value, making them interesting microorganisms from a biorefinery perspective. In the present study, the inhibitor tolerance of the Zygomycetes fungus Rhizopus sp. was evaluated and compared with a flocculating strain of Saccharomyces cerevisiae. The inhibitors furfural, 5-hydroxymethylfurfural [HMF], acetic acid, and levulinic acid and the phenolic compounds catechol, guaiacol, and vanillin were applied in different combinations in a semi-synthetic medium. Glucose uptake and conversion of HMF in the presence of inhibitors were analyzed for the two organisms, and it appeared that the inhibitor resistances of Rhizopus sp. and S. cerevisiae were comparable. However, in the presence of catechol (0.165 g L-1), guaiacol (0.186 g L-1), and vanillin (0.30 g L-1), the glucose uptake by S. cerevisiae was only 3.5% of its uptake in a medium without inhibitors, while under equal conditions, Rhizopus sp. maintained 43% of its uninhibited glucose uptake.
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| 33. |
- Ferreira, Jorge A., et al.
(författare)
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Airlift bioreactors for fish feed fungal biomass production using edible filamentous fungi
- 2017
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Konferensbidrag (refereegranskat)abstract
- Airlift bioreactors are generally considered to be better alternatives for cultivation of filamentous fungi in comparison to stirred-tank bioreactors or bubble columns bioreactors. The reason for the former includes fungal growth around all internal parts including impellers, baffles or pH, temperature and oxygen probes limiting mass transfer, whereas the latter is limited by air flow rates that can be applied before the system provides deficient mixing and so mass transfer rates. Spent sulphite liquor, a by-product from the paper pulp industry, was used for cultivation of edible Rhizopus sp., a strain isolated from Indonesian tempeh used as human food, using a 26 L airlift bioreactor. Increasing the aeration rate from 0.15 to 1 vvm led to increased biomass production (1 vs 7 g/L). The aeration rate was also found to influence fungal morphology and metabolite production during batch cultivation. Rhizopus sp. shifted from mycelial suspensions at 0.15 and 0.5 vvm to small compact pellets of regular size at 1 vvm. The production of ethanol and lactic acid, a proof of sub-optimal aeration conditions, was also reduced when increasing the aeration rate from 0.15 to 1 vvm. The produced biomass was found to be composed, on a dry weight basis, of 30-50% protein, 2-7% lipids, and 3-9% glucosamine. Considering the edible character of the fungus used as well as its biomass nutritional characteristics, there is a potential for its use as fishmeal replacement within the increasing aquaculture sector.
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| 34. |
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| 35. |
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| 36. |
- Ferreira, Jorge A, et al.
(författare)
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Production of ethanol and biomass from thin stillage by Neurospora intermedia : A pilot study for process diversification
- 2015
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Ingår i: Engineering in Life Sciences. - : Wiley-VCH Verlagsgesellschaft. - 1618-0240 .- 1618-2863. ; 15:8, s. 751-759
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Tidskriftsartikel (refereegranskat)abstract
- Dry mill ethanol processes produce ethanol and animal feed from whole grains,where the wastewater after the distillation and separation of solid materials is called“thin stillage.” In this work, similar production of ethanol (3.5 g/L) and biomass(5 g/L) from thin stillage was obtained during batch cultivation of the edible fungusNeurospora intermedia in a 2-m high airlift reactor and bubble column. The fungalbiomass, containing 50% w/w protein and 12% w/w lipids, was rich in essentialamino acids and omega-3 and -6 fatty acids. In a continuousmode of fermentation,dilution rates of up to 0.2 h−1 could be applied without cell washout in the bubblecolumn at 0.5 vvm. At 0.1 h−1, around 5 g/L of ethanol and 4 g/L of biomasscontaining ca. 50% w/w protein were produced. The fungus was able to assimilatesaccharides in the liquid fraction as well as sugar backbones such as xylan andarabinan in the solid fraction. The inclusion of the current process could potentiallylead to the production of 11 000 m3 of ethanol (5.5% improvement vs. normalindustrial process) and around 6300 tons of high-quality biomass for animal feed ata typical facility producing 200 000 m3 ethanol per year.
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| 37. |
- Ferreira, Jorge A., et al.
(författare)
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Production of Ethanol and Biomass from Thin Stillage Using Food-Grade Zygomycetes and Ascomycetes Filamentous Fungi
- 2014
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Ingår i: Energies. - : MDPI. - 1996-1073. ; 7:6, s. 3872-3885
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Tidskriftsartikel (refereegranskat)abstract
- A starch-based ethanol facility producing 200,000 m3 ethanol/year also produces ca. 2 million m3 thin stillage, which can be used to improve the entire process. In this work, five food-grade filamentous fungi, including a Zygomycete and four Ascomycetes were successfully grown in thin stillage containing 9% solids. Cultivation with Neurospora intermedia led to the production of ca. 16 g·L−1 biomass containing 56% (w/w) crude protein, a reduction of 34% of the total solids, and 5 g·L−1 additional ethanol. In an industrial ethanol production process (200,000 m3 ethanol/year), this can potentially lead to the production of 11,000 m3 extra ethanol per year. Cultivation with Aspergillus oryzae resulted in 19 g·L−1 biomass containing 48% (w/w) crude protein and the highest reduction of the thin stillage glycerol (54%) among the Ascomycetes. Cultivation with Rhizopus sp. produced up to 15 g·L−1 biomass containing 55% (w/w) crude protein. The spent thin stillage had been reduced up to 85%, 68% and 21% regarding lactic acid, glycerol and total solids, respectively. Therefore, N. intermedia, in particular, has a high potential to improve the ethanol process via production of additional ethanol and high-quality biomass, which can be considered for animal feed applications such as for fish feed.
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| 38. |
- Ferreira, Jorge A., et al.
(författare)
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Spent sulphite liquor for cultivation of an edible Rhizopus sp.
- 2012
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Ingår i: BioResources. - : North Carolina State University: College of Natural Resources. - 1930-2126. ; 7:1, s. 173-188
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Tidskriftsartikel (refereegranskat)abstract
- Spent sulphite liquor, the major byproduct from the sulphite pulp production process, was diluted to 50% and used for production of an edible zygomycete Rhizopus sp. The focus was on production, yield, and composition of the fungal biomass composition. The fungus grew well at 20 to 40°C, but 32°C was found to be preferable compared to 20 and 40°C in terms of biomass production and yield (maximum of 0.16 g/g sugars), protein content (0.50-0.60 g/g), alkali-insoluble material (AIM) (ca 0.15 g/g), and glucosamine content (up to 0.30 g/g of AIM). During cultivation in a pilot airlift bioreactor, the yield increased as aeration was raised from 0.15 to 1.0 vvm, indicating a high demand for oxygen. After cultivation at 1.0 vvm for 84 h, high yield and production of biomass (up to 0.34 g/g sugars), protein (0.30-0.50 g/g), lipids (0.02-0.07 g/g), AIM (0.16-0.28 g/g), and glucosamine (0.22-0.32 g/g AIM) were obtained. The fungal biomass produced from spent sulphite liquor is presently being tested as a replacement for fishmeal in feed for fish aquaculture and seems to be a potential source of nutrients and for production of glucosamine.
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| 39. |
- Ferreira, Jorge A., et al.
(författare)
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Waste biorefineries using filamentous ascomycetes fungi : Present status and future prospects
- 2016
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Ingår i: Bioresource Technology. - : Elsevier BV. - 0960-8524 .- 1873-2976. ; 215:sept, s. 334-345
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Tidskriftsartikel (refereegranskat)abstract
- Filamentous ascomycetes fungi have had important roles in natural cycles, and are already used industrially for e.g. supplying of citric, gluconic and itaconic acids as well as many enzymes. Faster human activities result in higher consumption of our resources and producing more wastes. Therefore, these fungi can be explored to use their capabilities to convert back wastes to resources. The present paper reviews the capabilities of these fungi in growing on various residuals, producing lignocellulose-degrading enzymes and production of organic acids, ethanol, pigments, etc. Particular attention has been on Aspergillus, Fusarium, Neurospora and Monascus genera. Since various species are used for production of human food, their biomass can be considered for feed applications and so biomass compositional characteristics as well as aspects related to culture in bioreactor are also provided. The review has been further complemented with future research avenues.[on SciFinder (R)]
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| 40. |
- Ferreira, Jorge A., et al.
(författare)
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Zygomycetes-based biorefinery: Present status and future prospects
- 2013
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Ingår i: Bioresource Technology. - : Elsevier BV. - 0960-8524 .- 1873-2976. ; 135, s. 523-532
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Tidskriftsartikel (refereegranskat)abstract
- Fungi of the phylum Zygomycetes fulfil all requirements for being utilized as core catalysts in biorefineries, and would be useful in creating new sustainable products. Apart from the extended use of Zygomycetes in preparing fermented foods, industrial metabolites such as lactic acid, fumaric acid, and ethanol are produced from a vast array of feedstocks with the aid of Zygomycetes. These fungi produce enzymes that facilitate their assimilation of various complex substrates, e.g., starch, cellulose, phytic acid, and proteins, which is relevant from an industrial point of view. The enzymes produced are capable of catalyzing various reactions involved in biodiesel production, preparation of corticosteroid drugs, etc. Biomass produced with the aid of Zygomycetes consists of proteins with superior amino acid composition, but also lipids and chitosan. The biomass is presently being tested for animal feed purposes, such as fish feed, as well as for lipid extraction and chitosan production. Complete or partial employment of Zygomycetes in biorefining procedures is consequently attractive, and is expected to be implemented within a near future.
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| 41. |
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| 42. |
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| 43. |
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| 44. |
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| 45. |
- Gmoser, Rebecca, 1990-, et al.
(författare)
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Combining submerged and solid state fermentation to convert waste bread into protein and pigment using the edible filamentous fungus N. intermedia.
- 2019
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Ingår i: Waste Management. - : Elsevier BV. - 0956-053X .- 1879-2456. ; 97, s. 63-70
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Tidskriftsartikel (refereegranskat)abstract
- Waste streams from ethanol and bread production present inexpensive, abundant and underutilized renewable substrates that are highly available for valorisation into high-value products. A combined submerged to solid state fermentation strategy was studied using the edible filamentous fungus Neurospora intermedia to biotransform ethanol plant residues 'thin stillage' and waste bread as substrates for the production of additional ethanol, biomass and a feed product rich in pigment. The fungus was able to degrade the stillage during submerged fermentation, producing 81 kg ethanol and 65 kg fungal biomass per ton dry weight of thin stillage. Concurrently, the second solid state fermentation step increased the protein content in waste bread by 161%. Additionally, 1.2 kg pigment per ton waste bread was obtained at the best conditions (6 days solid state fermentation under light at 95% relative humidity at 35 °C with an initial substrate moisture content of 40% using washed fungal biomass to initiate fermentation). This study presents a means of increasing the value of waste bread while reducing the treatment load on thin stillage in ethanol plants.
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| 46. |
- Gmoser, Rebecca, 1990-, et al.
(författare)
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From stale bread and brewers spent grain to a new food source using edible filamentous fungi
- 2020
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Ingår i: Bioengineered Bugs. - : Informa UK Limited. - 2165-5979 .- 2165-5987. ; 11:1, s. 582-598
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Tidskriftsartikel (refereegranskat)abstract
- By-products from the food sector with a high load of organic matter present both a waste-handling problem related to expenses and to the environment, yet also an opportunity. This study aims to increase the value of stale bread and brewers spent grain (BSG) by re-introducing these residues to the food production chain by converting them to new protein-enriched products using the edible filamentous fungi Neurospora intermedia and Rhizopusoryzae. After 6 days of solid state fermentation (at 35°C, with a95% relative humidity and moisture content of 40% in the substrate) on stale bread, a nutrient-rich fungal-fermented product was produced. The total protein content, as analyzed by total amino acids, increased from 16.5% in stale sourdough bread to 21.1% (on dry weight basis) in the final product with an improved relative ratio of essential amino acids. An increase in dietary fiber, minerals (Cu, Fe, Zn) and vitamin E, as well as an addition of vitamin D2 (0.89 µg/g dry weight sample) was obtained compared with untreated stale bread. Furthermore, addition of BSG to the sourdough bread with the aim to improve textural changes after fermentation showed promising outcomes. Cultivation of N. intermedia or R. oryzae on stale sourdough bread mixed with 6.5% or 11.8% BSG, respectively, resulted in fungal-fermented products with similar textural properties to a commercial soybean burger. Bioconversion of stale bread and BSG by fungal solid state fermentation to produce a nutrient-enriched food product was confirmed to be a successful way to minimize food waste and protein shortage.
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| 47. |
- Gmoser, Rebecca, 1990-, et al.
(författare)
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From surplus bread to burger using filamentous fungi at bakeries : Techno-economical evaluation
- 2021
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Ingår i: Cleaner Environmental Systems. - : Elsevier. - 2666-7894. ; 2
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Tidskriftsartikel (refereegranskat)abstract
- A novel approach of utilizing unsold bread at bakeries as a substrate for the fermentative production of a fungal food product have been developed. Techno-economic feasibility of implementing on-site solid-state fermentation in small-scale bakeries in Sweden to recover 10 kg/day surplus bread using the edible fungus Neurospora intermedia was investigated. Different inoculation to substrate ratios were compared, where 24% of fermented solids to inoculate the next batch presented the best fermentation-benefit ratio. Total capital cost was at its maximum €12,600 that can process 70 tons bread (10 kg/day) in its 20-years lifetime to produce 63 tons of product. Operational costs were dominated by labour cost (53%). Outcomes indicate that the process implementation is economically feasible with an annual net profit of €62,000, rate of return on investment of 18.5%, with a payback-period of 4 years at a discount rate of 7%. According to sensitivity analysis, product-selling price and process bread capacity were critical to the process's economics. Increasing the capacity to 100 kg/day resulted in a substantial increase in net profit value of €5,700,000 compared to the base case scenario. Implementation of this process cast insights on techno-economic performance of a sustainable treatment for surplus bread at bakery-level.
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| 48. |
- Gmoser, Rebecca, 1990-, et al.
(författare)
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Post-treatment of Fungal Biomass to Enhance Pigment Production
- 2019
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Ingår i: Applied Biochemistry and Biotechnology. - : Springer Science and Business Media LLC. - 0273-2289 .- 1559-0291.
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Tidskriftsartikel (refereegranskat)abstract
- A new post-treatment method of fungal biomass after fermentation is revealed. The post-treatment strategy was utilized to produce pigments as an additional valuable metabolite. Post-treatment included incubation at 95% relative humidity where the effects of harvesting time, light, and temperature were studied. Pigment-producing edible filamentous fungus Neurospora intermedia cultivated on ethanol plant residuals produced 4 g/L ethanol and 5 g/L fungal biomass. Harvesting the pale biomass after 48 h submerged cultivation compared to 24 h or 72 h increased pigmentation in the post-treatment step with 35% and 48%, respectively. The highest pigment content produced, 1.4 mg/g dry fungal biomass, was obtained from washed biomass treated in light at 35 °C whereof the major impact on pigmentation was from washed biomass. Moreover, post-treated biomass contained 50% (w/w) crude protein. The post-treatment strategy successfully adds pigments to pre-obtained biomass. The pigmented fungal biomass can be considered for animal feed applications for domestic animals.
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| 49. |
- Gomez, P.F., et al.
(författare)
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Heavy metal biosorption by Rhizopus sp. biomass immobilized on textiles
- 2014
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Ingår i: Water, Air and Soil Pollution. - : Springer. - 0049-6979 .- 1573-2932. ; 225:2
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Tidskriftsartikel (refereegranskat)abstract
- Pollution by heavy metals is at present one of the major environmental concerns. In the present study, the potential of the filamentous zygomycete fungus Rhizopus sp. to absorb/adsorb metal ions from solution was investigated. With the aim to develop a feasible process, the fungus was immobilized on 10 different textile materials during the cultivation. All immobilized biosorbents reduced the Cu2+ concentrations initially from 20 to 3.1–5.6 mg/l within 150 min, with the exception of the biomass immobilized on wool, which reduced the Cu2+ level to 10.2 mg/l. The immobilized biomass (with the exception of wool) fitted well into a pseudo-second-order model. The uptake of copper showed a slight dependence on initial metal concentration. By reapplying immobilized Rhizopus sp. to a solution containing a low concentration of Cu2+ after going through a first step of biosorption, a decrease of the concentration to below 2 mg/l was accomplished, meeting the stipulated level for Cu2+ in human drinking water. Immobilization of fungal biomass in a cushion was also successfully applied in the biosorption process. The positive results obtained in a two-step biosorption indicate that a sequential arrangement could be the foundation for a commercial product.
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| 50. |
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