| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Jin, Yuepeng, et al.
(författare)
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Involvement of the PI3K/Akt/NF- B Signaling Pathway in the Attenuation of Severe Acute Pancreatitis-Associated Acute Lung Injury by Sedum sarmentosum Bunge Extract
- 2017
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Ingår i: BioMed Research International. - : Hindawi Limited. - 2314-6133 .- 2314-6141. ; 2017
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Tidskriftsartikel (refereegranskat)abstract
- Sedum sarmentosum Bunge possesses excellent anti-inflammatory properties and was used in the treatment of inflammatory diseases. The aim of the present study was to investigate the efficiency of Sedum sarmentosum Bunge extract (SSBE) on severe acute pancreatitis-associated (SAP-associated) acute lung injury (ALI) in rats and to explore the underlying mechanisms. Here, we used a sodium taurocholate-induced SAP rat model to determine the role of SSBE in ALI. During the course of pancreatitis, the expressions of phosphorylated phosphoinositide 3-kinases (PI3K)/protein kinase B (Akt) and nuclear factor-kappa B (NF-B) p65 in the lungs were upregulated. Meanwhile, a parallel increase in the levels of interleukin-1β (IL-1β), interleukin-6 (IL-6), and tumor necrosis factor- (TNF-) in the lungs was observed after the induction of SAP. Treatment with SSBE significantly reduced the expression of p-Akt and p-p65 in the lungs and attenuated the severity of SAP-associated ALI compared to the SAP group at 12 h and 24 h. In summary, this study showed that SSBE has beneficial effects on SAP-associated ALI, probably through the PI3-K/Akt signaling pathways by suppressing the NF-B activities.
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| 3. |
- Yang, Zhilin, et al.
(författare)
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Surface enhanced Raman scattering of pyridine adsorbed on Au@Pd core/shell nanoparticles
- 2009
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Ingår i: Journal of Chemical Physics. - : AIP Publishing. - 0021-9606 .- 1089-7690. ; 130:23
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Tidskriftsartikel (refereegranskat)abstract
- Surface enhanced Raman scattering (SERS) of pyridine adsorbed on Au@Pd core/shell nanoparticles has been investigated theoretically with quantum chemical method, generalized Mie theory and three-dimensional finite-difference time domain (3D-FDTD) method. We first studied the influence of the coated Pd on the electronic structure of Au nanoparticle, and compared the electronic structure of Au-20 cluster with that of Au10Pd10 (core/shell) cluster. Second, we studied SERS spectroscopy of pyridine on Au@Pd core/shell nanoparticles, which revealed the rate of static chemical enhancement and electromagnetic enhancement in the experimental reports. Third, the influence of the Pd shell thickness to the optical absorption of Au@Pd core/shell nanoparticles was investigated with generalized Mie theory. Fourth, we studied the influence of the shell thickness to the local electric field enhancement with 3D-FDTD method. The theoretical results reveal that the static chemical enhancement and electromagnetic enhancement are in the order of 10 and 10(3), respectively. These theoretical studies promote the deeper understanding of the electronic structure and optical absorption properties of Au@Pd, and the mechanisms for SERS of molecule adsorbed on Au@Pd.
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| 4. |
- Dong, Bin, et al.
(författare)
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Local and Remote Charge-Transfer-Enhanced Raman Scattering on One-Dimensional Transition-Metal Oxides
- 2010
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Ingår i: Chemistry - An Asian Journal. - : Wiley. - 1861-4728. ; 5:8, s. 1824-1829
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Tidskriftsartikel (refereegranskat)abstract
- The one-dimensional (1D) transition-metal oxide MoO3 belt is synthesized and characterized with Xray diffraction, scanning electron microscopy, and Raman spectroscopy. Charge-transfer-(CT) enhanced Raman scattering of 4-mercaptobenzoic acid (4-MBA) on a 1D MoO3 belt was investigated experimentally and theoretically. The chemical enhancement of surface-enhanced Raman scattering (SERS) of 4-MBA on the MoO3 belt by CT is in the order of 10(3). The SERS of 4-MBA was investigated theoretically by using a quantum chemical method. The remote SERS of 4-MBA along the 1D MoO3 belt (the light excitation to one side of the MoO3 belt, and the SERS spectrum is collected on the other side of the MoO3 belt) is also shown experimentally, which provides potential applications of SERS. The incident polarization dependence of remote SERS spectra has also been investigated experimentally.
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| 5. |
- Fang, Yurui, et al.
(författare)
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Ascertaining p,p '-Dimercaptoazobenzene Produced from p-Aminothiophenol by Selective Catalytic Coupling Reaction on Silver Nanoparticles
- 2010
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Ingår i: Langmuir. - : American Chemical Society (ACS). - 0743-7463 .- 1520-5827. ; 26:11, s. 7737-7746
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Tidskriftsartikel (refereegranskat)abstract
- Combining experiment and theory, evidence from surface-enhanced Raman scattering (SERS) were obtained for p,p'-dimercaptoazobenzene (DMAB) produced from p-aminothiophenol (PATP) by selective catalytic coupling reaction on silver nanoparticles. The time-dependent SERS spectra of PATE are consistent with the calculated SERS spectra of DMAB), which is the direct evidence or the production of DMAB from PATE by selective catalytic coupling reaction on silver nanoparticles. The so-called "b(2) modes" of PATP is the -N=N- related vibrational modes of DMAB. The silver nanoparticles could be assembled together to form different size of aggregates with different concentration of PATE solution. When the concentration of Ag nanoparticle (the radius 40 nm) in colloid is 35 pM, the time-dependent SERS of DMA B reveals that the better experimental conditions for observing SERS signals of DMA B are (1) concentration of PATE is around 5 x 0(-6) M in which condition the aggregates consist with about 3-5 silver nanoparticles. which are not too big and suitable for SERS measurement, and (2) the Raman signal will be strongest at the thne delay about 27 min for this concentration. By analyzing the symmetry of strong enhanced vibrational modes, it is derived that all ask strong vibrational modes are mostly enhanced by surface plasmons (electromagnetic field). The SERS enhancement calculated with finite-difference time-domain method is on the order of |M|(4) = 9.0 x 10(8) in junctions of AgNPs at 632.8 nm, where |M|(4) = E-loc/E-in and E-loc and E-in are local and incident electric fields, respectively. The total chemical enhancements, including static chemical and resonant enhancements, are on the order of 10(3).
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| 6. |
- Ingegnoli, Francesca, et al.
(författare)
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A comparison between nailfold capillaroscopy patterns in adulthood in juvenile and adult-onset systemic sclerosis: A EUSTAR exploratory study
- 2015
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Ingår i: Microvascular Research. - : Elsevier BV. - 1095-9319 .- 0026-2862. ; 102, s. 19-24
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Tidskriftsartikel (refereegranskat)abstract
- Objective: Qualitative capillaroscopy patterns in juvenile- and adult-onset systemic sclerosis (SSc) were studied in adulthood using data from the EULAR Scleroderma Trials and Research (EUSTAR) database. Methods: Data collected between June 2004 and April 2013 were examined with focus on capillaroscopy. In this retrospective exploratory study, series of patients with juvenile-onset SSc were matched with series of adult-onset SSc having the same gender and autoantibody profile. Results: 30 of 123 patients with juvenile-onset and 2108 of 7133 with adult-onset SSc had data on capillaroscopy. Juvenile-onset SSc showed scleroderma pattern more frequently than adult-onset SSc (93.3% and 88%). The OR was 2.44 and 95% Cl 0.57-10.41. An active scleroderma pattern was present in 58% of juvenile- and 61% of adult-onset SSc. The OR was 0.91 and 95% Cl 0.28-2.93. The late scleroderma pattern was present in 61% of juvenile- and 55.5% of adult-onset SSc. The OR was 1.06 and 95% Cl 0.34-3.56. Conclusion: This is the first exploratory study on the comparison of capillaroscopy between juvenile- and adult-onset SSc in adulthood. Juvenile-onset SSc had an increase prevalence of sderoderma pattern, but a similar distribution of the three patterns was suggested. Further studies are needed to define this issue. (C) 2015 Elsevier Inc. All rights reserved.
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| 7. |
- Li, Yuanzuo, et al.
(författare)
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Theoretical Characterization of the PC60BM:PDDTT Model for an Organic Solar Cell
- 2011
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Ingår i: Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 115:44, s. 21865-21873
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Tidskriftsartikel (refereegranskat)abstract
- We use time-dependent density functional theory together with a set of extensive multidimensional visualization techniques to characterize band gap, optical absorption properties, intramolecular and intern-wreaths charge transfer, exciton binding energy, charge transfer integral, and the rate of charge transfer and recombination in the PC60BM:PDDTT Model of an organic,solar cell. These theoretical methods and calculation techniques only promote deeper understanding of the connection between chemical structures and the optical and electronic properties Of the donor-acceptor system but also can be used to rational design novel donor-acceptor system.
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| 8. |
- Lin, Weihua, et al.
(författare)
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Physical mechanism on exciton-plasmon coupling revealed by femtosecond pump-probe transient absorption spectroscopy.
- 2017
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Ingår i: Materials Today Physics. - : Elsevier BV. - 2542-5293. ; 3, s. 33-40
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Tidskriftsartikel (refereegranskat)abstract
- The unclear mechanism of exciton-plasmon coupling interaction in monolayer MoS2-Ag nanoparticles hybrid, as a longstanding target in molecular nanotechnology and catalysis, is systemically investigated with transmission spectra and femtosecond pump-probe transient absorption spectroscopy in this paper. The properties of exciton in monolayer MoS2 are strongly enhanced due to the local surface plasmon resonance (LSPR) induced by Ag nanoparticles, and manifested by obvious changes in transmission spectra. Furthermore, we discuss the dynamic processes of exciton-plasmon coupling interaction with the femtosecond transient absorption spectroscopy, which indicates that there are three lifetimes, Auger scattering, electron-electron interaction and electron-phonon interaction, and illustrate the reason of the enlarged lifetime in hybrid system. Meanwhile, the intensity of A excitonic state in femtosecond transient absorption spectroscopy is significantly enhanced by LSPR, instead of excitonic state B. In conclusion, our study can promote the deeper understanding and illustrate the unique merits of the exciton-plasmon coupling interaction in the monolayer MoS2-Ag nanoparticles hybrid system.
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| 9. |
- Song, Peng, et al.
(författare)
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External Electric Field-Dependent Photoinduced Charge Transfer in a Donor-Acceptor System for an Organic Solar Cell
- 2013
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Ingår i: Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 117:31, s. 15879-15889
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Tidskriftsartikel (refereegranskat)abstract
- External electric field is incorporated into the generalized Mulliken-Hush model and Marcus theory. With this new development, we have investigated the field-dependent electronic structure and rate of photoinduced charge transfer in organic donor-acceptor dyad using time-dependent density functional theory and extensive multidimensional visualization techniques. The model is used to evaluate the influence of the external electric field on the electronic coupling between donor and acceptor. The reorganization energy and the free energy change of the electron transfer were calculated. It was found that the major effects in the external electric field dependent rate of the charge transfer originate from changes in the electronic coupling. The new theoretical approach not only promotes a deeper understanding of the connection between the external electric field, chemical structure, and optical and electronic properties of the donor-acceptor system, but also can be used for rational design of novel donor-acceptor system for organic solar cells.
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| 10. |
- Song, Peng, et al.
(författare)
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Photoinduced Electron Transfer in Organic Solar Cells.
- 2016
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Ingår i: The Chemical Record. - : Wiley. - 1527-8999.
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Tidskriftsartikel (refereegranskat)abstract
- Electron transfer (ET) is the key process in light-driven charge separation reactions in organic solar cells. The current review summarizes the progress in theoretical modelling of ET in these materials. First we give an account of ET, with a description originating from Marcus theory. We systematically go through all the relevant parameters and show how they depend on different material properties, and discuss the consequences such dependencies have for the performance of the devices. Finally, we present a set of visualization methods which have proven to be very useful in analyzing the elementary processes in absorption and charge separation events. Such visualization tools help us to understand the properties of the photochemical and photobiological systems in solar cells.
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| 11. |
- Sun, Mengtao, et al.
(författare)
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Direct visual evidence for chemical mechanisms of SERRS via charge transfer in Au-20-pyrazine-Au-20 junction
- 2009
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 40:12, s. 1942-1948
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Tidskriftsartikel (refereegranskat)abstract
- The essence of the chemical mechanism for surface-enhanced resonance Raman scattering (SERRS) is the charge transfer (CT) between the metal and the molecule at the resonant electronic transition, which results in the mode-selective enhancement in the SERRS spectrum. The site-orientated CT can directly interpret the mode-selective chemical enhancement in SERRS. However, it is a great challenge to intutively visualize the orientation and site of the CT. In this paper, for the pyrazine-Au-2 complex, a three-dimensional [3D) cubic representation is built to provide direct visual evidence for chemical mechanisms of SERRS via CT from the Au-2 cluster to pyrazine at the resonant electronic transition. The relationship between the mode-selective enhancements in SERRS and the site-orientated CT was clearly revealed. The intracluster excitation (analog of plasmon excitation in large naonoparticles) was also visualized by the 3D cubic presentation, which provided the direct evidence of local electromagnetic field enhancement of SERRS. To study the quantum size effect and the coupling effect of the nanoparticles, the photoexcitation mechanisms of the Au-20 - pyrazine complex and the Au-20 - pyrazine - Au-20 junction were also investigated. The tunneling charge transfer from one Au-20 cluster to another Au-20 cluster outside the pyrazine in Au-20 - pyrazine - Au-20 junction was also revealed visually. The calculated normalized extinction spectra of Au nanoparticles using the generalized Mie theory reveal that the resonance peak is red-shifted due to the coupling between particles. Copyright (C) 2009 John Wiley & Sons, Ltd.
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| 12. |
- Sun, Mengtao, et al.
(författare)
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Direct visual evidence for the chemical mechanism of surface-enhanced resonance Raman scattering via charge transfer: (II) Binding-site and quantum-size effects
- 2009
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 40:9, s. 1172-1177
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Tidskriftsartikel (refereegranskat)abstract
- We describe quantum-size and binding-site effects on the chemical and local field enhancement mechanisms of surface-enhanced resonance Raman scattering (SERRS), in which the pyridine molecule is adsorbed on one of the vertices of the Ag-20 tetrahedron. We first investigated the influence of the binding site on normal Raman scattering (NRS) and excited state properties of optical absorption spectroscopy. Second, we investigated the quantum-size effect on the electromagnetic (EM) and chemical mechanism from 300 to 1000 nm with charge difference density. It is found that the strong absorption at around 350 nm is mainly the charge transfer (CT) excitation (CT between the molecule and the silver cluster) for large clusters, which is the direct evidence for the chemical enhancement mechanism for SERRS; for a small cluster the strong absorption around 350 nm is mainly intracluster excitation, which is the direct evidence for the EM enhancement mechanism. This conclusion is further confirmed with the general Mie theory. The plasmon peak in EM enhancement will be red-shifted with the increase of cluster size. The influence of the binding site and quantum-size effects on NRS, as well as chemical and EM enhancement mechanisms on SERRS, is significant. Copyright (C) 2009 John Wiley & Sons, Ltd.
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| 13. |
- Sun, Mengtao, et al.
(författare)
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Intermolecular charge and energy transfer in neurosporene and chlorophyll a derivative complex
- 2005
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Ingår i: Chemical Physics Letters. - : Elsevier BV. - 0009-2614. ; 412:4-6, s. 425-429
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Tidskriftsartikel (refereegranskat)abstract
- Dye-sensitized solar cells using a chlorophyll a derivative (PPB a der.) as the sensitizer and carotenoids having different conjugation lengths as redox spacers was studied experimentally. In this Letter, the excited state properties of the neurosporene & PPB a der. complex are investigated theoretically with quantum chemistry method. The 2D real space analysis with the transition density matrix reveals that some excited states are locally excited states, and some is the intermolecular charge transfer (ICT) state. The 3D real space analysis reveals: (1) that the orientation and the strength of the dipole moment from transition density, and (2) the orientation and result of ICT in Neurosporene & PPB a der. complex from charge difference density. (c) 2005 Elsevier B.V. All rights reserved.
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| 14. |
- Sun, Mengtao, et al.
(författare)
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Remote Excitation Polarization-Dependent Surface Photochemical Reaction by Plasmonic Waveguide
- 2011
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Ingår i: Plasmonics. - : Springer Science and Business Media LLC. - 1557-1963 .- 1557-1955. ; 6:4, s. 681-687
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Tidskriftsartikel (refereegranskat)abstract
- For the first time, we report remote excitation polarization-dependent surface photochemical reaction by plasmonic waveguide. Remote excitation polarization-dependent surface-enhanced Raman scattering (SERS) spectra indicate a surface photochemical reaction that p-aminothiophenol is converted to p,p'-dimercaptoazobenzene (DMAB) induced by the plasmonic waveguide. Surface plasmon polaritons generated at the end of a silver nanowire can propagate efficiently along the nanowire, and be coupled by nanoparticles near the nanowire as a nanoantenna. Massive electromagnetic enhancement is generated in the nanogap between the nanowire and the nanoparticles. The remote excitation polarization-dependent SERS spectra can be obtained experimentally in the nanogaps; furthermore, the remote excitation polarization-dependent SERS spectra of DMAB reveal the occurrence of this surface catalytic reaction. Theoretical simulations using finite-difference time-domain methods strongly support our experimental results.
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| 15. |
- Xia, Lixin, et al.
(författare)
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Selective reduction of nitroaromatic compounds on silver nanoparticles by visible light
- 2012
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 43:8, s. 1024-1028
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Tidskriftsartikel (refereegranskat)abstract
- For the first time, we report experimentally and theoretically that nitroaromatic compounds, 2,4-dinitrobenzenethiol and 4-chloro-2-nitrobenzenethiol, on silver sols can be selectively reduced to 2-amino-4-nitrobenzenethiol and 2-amino-4-chlorobenzenethiol simply by irradiating with a visible light in ambient conditions, and the selective photoreduction is a very facile process. The results of quantum chemical calculations are in good agreement with our experimental data. Copyright (c) 2012 John Wiley & Sons, Ltd.
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