| 1. |
- Weinstein, John N., et al.
(författare)
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The cancer genome atlas pan-cancer analysis project
- 2013
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 45:10, s. 1113-1120
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Forskningsöversikt (refereegranskat)abstract
- The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile. © 2013 Nature America, Inc. All rights reserved.
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| 2. |
- Connor, Liam, et al.
(författare)
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Galactic Radio Explorer: An All-sky Monitor for Bright Radio Bursts
- 2021
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Ingår i: Publications of the Astronomical Society of the Pacific. - : IOP Publishing. - 0004-6280 .- 1538-3873. ; 133:1025
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Tidskriftsartikel (refereegranskat)abstract
- We present the Galactic Radio Explorer (GReX), an all-sky monitor to probe the brightest bursts in the radio sky. Building on the success of STARE2, we will search for fast radio bursts emitted from Galactic magnetars as well as bursts from nearby galaxies. GReX will search down to similar to ten microseconds time resolution, allowing us to find new super giant radio pulses from Milky Way pulsars and study their broadband emission. The proposed instrument will employ ultra-wide band (0.7-2 GHz) feeds coupled to a high-performance (receiver temperature <10 K) low noise amplifier originally developed for the DSA-110 and DSA-2000 projects. In GReX Phase I (GReX-I), unit systems will be deployed at Owens Valley Radio Observatory and Big Smoky Valley, Nevada. Phase II will expand the array, placing feeds in India, Australia, and elsewhere in order to build up to continuous coverage of nearly 4 pi steradians and to increase our exposure to the Galactic plane. We model the local magnetar population to forecast for GReX, finding the improved sensitivity and increased exposure to the Galactic plane could lead to dozens of FRB-like bursts per year.
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| 3. |
- Dai, Ruihan, et al.
(författare)
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Electron crystallography reveals atomic structure of metal-organic nanoplate with Hf12(µ3-O)8(µ3-OH)8(µ2-OH)6 secondary building unit
- 2017
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Ingår i: Inorganic Chemistry. - : American Chemical Society (ACS). - 0020-1669 .- 1520-510X. ; 56:14, s. 8128-8134
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Tidskriftsartikel (refereegranskat)abstract
- Nanoscale metal–organic frameworks (nMOFs) have shown tremendous potential in cancer therapy and biomedical imaging. However, their small dimensions present a significant challenge in structure determination by single-crystal X-ray crystallography. We report here the structural determination of nMOFs by rotation electron diffraction (RED). Two isostructural Zr- and Hf-based nMOFs with linear biphenyldicarboxylate (BPDC) or bipyridinedicarboxylate (BPYDC) linkers are stable under intense electron beams to allow the collection of high-quality RED data, which reveal a MOF structure with M12(μ3-O)8(μ3-OH)8(μ2-OH)6 (M = Zr, Hf) secondary building units (SBUs). The nMOF structures differ significantly from their UiO bulk counterparts with M6(μ3-O)4(μ3-OH)4 SBUs and provide the foundation for clarifying the structures of a series of previously reported nMOFs with significant potential in cancer therapy and biological imaging. Our work clearly demonstrates the power of RED in determining nMOF structures and elucidating the formation mechanism of distinct nMOF morphologies.
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| 4. |
- He, Huihui, et al.
(författare)
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Sex-related differences in the hypertriglyceridemic-waist phenotype in association with hyperuricemia : a longitudinal cohort study
- 2023
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Ingår i: Lipids in Health and Disease. - : Springer Nature. - 1476-511X. ; 22
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Tidskriftsartikel (refereegranskat)abstract
- Background: There is limited longitudinal evidence supporting the association between the hypertriglyceridemic-waist (HTGW) phenotype and hyperuricemia. This study aimed to examine the longitudinal relationship between hyperuricemia and the HTGW phenotype among males and females.Methods: A total of 5562 hyperuricemia-free participants aged 45 or over from the China Health and Retirement Longitudinal Study (mean age: 59.0) were followed for 4 years. The HTGW phenotype was defined as having elevated triglyceride levels and enlarged waist circumference (cutoffs for males: 2.0 mmol/L and 90 cm; females: 1.5 mmol/L and 85 cm). Hyperuricemia was determined by uric acid cutoffs (males: 7 mg/dl; females: 6 mg/dl. Multivariate logistic regression models were used to assess the association between the HTGW phenotype and hyperuricemia. The joint effect of the HTGW phenotype and sex on hyperuricemia was quantified, and the multiplicative interaction was assessed.Results: During the four-year follow-up, 549 (9.9%) incident hyperuricemia cases were ascertained. Compared with those with normal levels of triglycerides and waist circumference, participants with the HTGW phenotype had the highest risk of hyperuricemia (OR: 2.67; 95% CI: 1.95 to 3.66), followed by an OR of 1.96 (95% CI: 1.40 to 2.74) for only higher triglyceride levels and 1.39 (95% CI: 1.03 to 1.86) for only greater waist circumference. The association between HTGW and hyperuricemia was more prominent among females (OR = 2.36; 95% CI: 1.77 to 3.15) than males (OR = 1.29; 95% CI: 0.82 to 2.04), with evidence of a multiplicative interaction (P = 0.006).Conclusions: Middle-aged and older females with the HTGW phenotype may at the highest risk of hyperuricemia. Future hyperuricemia prevention interventions should be primarily targeted for females with the HTGW phenotype.
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| 5. |
- Liu, Mengling, et al.
(författare)
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Estimation and selection of complex covariate effects in pooled nested case-control studies with heterogeneity
- 2013
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Ingår i: Biostatistics. - : Oxford University Press. - 1465-4644 .- 1468-4357. ; 14:4, s. 682-694
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Tidskriftsartikel (refereegranskat)abstract
- A major challenge in cancer epidemiologic studies, especially those of rare cancers, is observing enough cases. To address this, researchers often join forces by bringing multiple studies together to achieve large sample sizes, allowing for increased power in hypothesis testing, and improved efficiency in effect estimation. Combining studies, however, renders the analysis difficult owing to the presence of heterogeneity in the pooled data. In this article, motivated by a collaborative nested case-control (NCC) study of ovarian cancer in three cohorts from United States, Sweden, and Italy, we investigate the use of penalty regularized partial likelihood estimation in the context of pooled NCC studies to achieve two goals. First, we propose an adaptive group lasso (gLASSO) penalized approach to simultaneously identify important variables and estimate their effects. Second, we propose a composite agLASSO penalized approach to identify variables with heterogeneous effects. Both methods are readily implemented with the group coordinate gradient decent algorithm and shown to enjoy the oracle property. We conduct simulation studies to evaluate the performance of our proposed approaches in finite samples under various heterogeneity settings, and apply them to the pooled ovarian cancer study.
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| 6. |
- Nie, Junsheng, et al.
(författare)
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Loess Plateau storage of Northeastern Tibetan Plateau-derived Yellow River sediment
- 2015
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- Marine accumulations of terrigenous sediment are widely assumed to accurately record climatic- and tectonic-controlled mountain denudation and play an important role in understanding late Cenozoic mountain uplift and global cooling. Underpinning this is the assumption that the majority of sediment eroded from hinterland orogenic belts is transported to and ultimately stored in marine basins with little lag between erosion and deposition. Here we use a detailed and multi-technique sedimentary provenance dataset from the Yellow River to show that substantial amounts of sediment eroded from Northeast Tibet and carried by the river/'s upper reach are stored in the Chinese Loess Plateau and the western Mu Us desert. This finding revises our understanding of the origin of the Chinese Loess Plateau and provides a potential solution for mismatches between late Cenozoic terrestrial sedimentation and marine geochemistry records, as well as between global CO2 and erosion records.
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| 7. |
- Pang, Cheng, et al.
(författare)
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Software-defined automation and control : a preliminary study
- 2017
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Ingår i: Proceedings IECON 2017. - Piscataway, NJ : Institute of Electrical and Electronics Engineers (IEEE). - 9781538611272 ; , s. 5497-5502
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Konferensbidrag (refereegranskat)abstract
- The pervasiveness and significance of software have upset its subordinate role in the original software-hardware relationship. Software has become a main factor for defining and differentiating various “things”. This has led to a new emerging technology trend called Software-defined Anything (SDx), where a system's functionality and diversity are largely characterized by its software. SDx technologies are now pervading and reshaping many industries. This work initiates the investigation on possible approaches for applying the SDx paradigm in automation and control systems. In particular, a framework consists of commodity control hardware, service-oriented control software, and a cloud computing platform has been proposed. An application in building automation and management system has been developed and deployed to demonstrate the proposed approach's feasibility.
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| 8. |
- Shang, Shulian, et al.
(författare)
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Partially linear single index Cox regression model in nested case-control studies
- 2013
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Ingår i: Computational Statistics & Data Analysis. - : Elsevier BV. - 0167-9473 .- 1872-7352. ; 67, s. 199-212
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Tidskriftsartikel (refereegranskat)abstract
- The nested case-control (NCC) design is widely used in epidemiologic studies as a cost-effective subcohort sampling method to study the association between a disease and its potential risk factors. NCC data are commonly analyzed using Thomas' partial likelihood approach under the Cox proportional hazards model assumption. However, the linear modeling form in the Cox model may be insufficient for practical applications, especially when there are a large number of risk factors under investigation. In this paper, we consider a partially linear single index proportional hazards model, which includes a linear component for covariates of interest to yield easily interpretable results and a nonparametric single index component to adjust for multiple confounders effectively. We propose to approximate the nonparametric single index function by polynomial splines and estimate the parameters of interest using an iterative algorithm based on the partial likelihood. Asymptotic properties of the resulting estimators are established. The proposed methods are evaluated using simulations and applied to an NCC study of ovarian cancer.
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| 9. |
- Yao, Yuhan, et al.
(författare)
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The Tidal Disruption Event AT2021ehb : Evidence of Relativistic Disk Reflection, and Rapid Evolution of the Disk-Corona System
- 2022
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 937:1
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Tidskriftsartikel (refereegranskat)abstract
- We present X-ray, UV, optical, and radio observations of the nearby (≈78 Mpc) tidal disruption event AT2021ehb/ZTF21aanxhjv during its first 430 days of evolution. AT2021ehb occurs in the nucleus of a galaxy hosting a≈107 M⊙ black hole (MBH inferred from host galaxy scaling relations). High-cadence Swift and Neutron Star Interior Composition Explorer (NICER) monitoring reveals a delayed X-ray brightening. The spectrum first undergoes a gradual soft → hard transition and then suddenly turns soft again within 3 days at δt≈272 days during which the X-ray flux drops by a factor of 10. In the joint NICER+NuSTAR observation (δt = 264 days, harder state), we observe a prominent nonthermal component up to 30 keV and an extremely broad emission line in the iron K band. The bolometric luminosity of AT2021ehb reaches a maximum of 6.0+10.4-3.8%LEdd when the X-ray spectrum is the hardest. During the dramatic X-ray evolution, no radio emission is detected, the UV/optical luminosity stays relatively constant, and the optical spectra are featureless. We propose the following interpretations: (i) the soft → hard transition may be caused by the gradual formation of a magnetically dominated corona; (ii) hard X-ray photons escape from the system along solid angles with low scattering optical depth (∼a few) whereas the UV/optical emission is likely generated by reprocessing materials with much larger column density—the system is highly aspherical; and (iii) the abrupt X-ray flux drop may be triggered by the thermal–viscous instability in the inner accretion flow, leading to a much thinner disk.
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| 10. |
- Yao, Yuhan, et al.
(författare)
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Tidal Disruption Event Demographics with the Zwicky Transient Facility : Volumetric Rates, Luminosity Function, and Implications for the Local Black Hole Mass Function
- 2023
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Ingår i: Astrophysical Journal Letters. - 2041-8205 .- 2041-8213. ; 955:1
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Tidskriftsartikel (refereegranskat)abstract
- We conduct a systematic tidal disruption event (TDE) demographics analysis using the largest sample of optically selected TDEs. A flux-limited, spectroscopically complete sample of 33 TDEs is constructed using the Zwicky Transient Facility over 3 yr (from 2018 October to 2021 September). We infer the black hole (BH) mass (MBH) with host galaxy scaling relations, showing that the sample MBH ranges from 105.1M⊙ to 108.2M⊙. We developed a survey efficiency corrected maximum volume method to infer the rates. The rest-frame g-band luminosity function can be well described by a broken power law of , with Lbk = 1043.1 erg s−1. In the BH mass regime of 105.3 ≲ (MBH/M⊙) ≲ 107.3, the TDE mass function follows , which favors a flat local BH mass function (). We confirm the significant rate suppression at the high-mass end (MBH ≳ 107.5M⊙), which is consistent with theoretical predictions considering direct capture of hydrogen-burning stars by the event horizon. At a host galaxy mass of Mgal ∼ 1010M⊙, the average optical TDE rate is ≈3.2 × 10−5 galaxy−1 yr−1. We constrain the optical TDE rate to be [3.7, 7.4, and 1.6] × 10−5 galaxy−1 yr−1 in galaxies with red, green, and blue colors.
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| 11. |
- Zhang, Lei, et al.
(författare)
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A window–space-directed assembly strategy for the construction of supertetrahedron-based zeolitic mesoporous metal–organic frameworks with ultramicroporous apertures for selective gas adsorption
- 2021
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Ingår i: Chemical Science. - : Royal Society of Chemistry. - 2041-6520 .- 2041-6539. ; 12:16, s. 5767-5773
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Tidskriftsartikel (refereegranskat)abstract
- Despite their scarcity due to synthetic challenges, supertetrahedron-based metal–organic frameworks (MOFs) possess intriguing architectures, diverse functionalities, and superb properties that make them in‑demand materials. Employing a new window–space-directed assembly strategy, a family of mesoporous zeolitic MOFs have been constructed herein from corner-shared supertetrahedra based on homometallic or heterometallic trimers [M3(OH/O)(COO)6] (M3 = Co3, Ni3 or Co2Ti). These MOFs consisted of close-packed truncated octahedral cages possessing a sodalite topology and large β-cavity mesoporous cages (~22 Å diameter) connected by ultramicroporous apertures (~5.6 Å diameter). Notably, the supertetrahedron-based sodalite topology MOF composed with the Co2Ti trimer exhibited high thermal and chemical stability as well as the ability to efficiently separate acetylene (C2H2) from carbon dioxide (CO2).
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