| 1. |
- Gulshan Kazi, Zubaida, et al.
(författare)
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A CGTase with high coupling activity using γ-cyclodextrin isolated from a novel strain clustering under the genus Carboxydocella.
- 2015
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Ingår i: Glycobiology. - : Oxford University Press (OUP). - 1460-2423 .- 0959-6658. ; 25:5, s. 514-523
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Tidskriftsartikel (refereegranskat)abstract
- Cyclodextrin glucanotransferases (CGTases; EC 2.4.1.19) have mainly been characterized for their ability to produce cyclodextrins (CDs) from starch in an intramolecular transglycosylation reaction (cyclization). However, this class of enzymes can also catalyze intermolecular transglycosylation via disproportionation or coupling reactions onto a wide array of acceptors and could therefore be valuable as a tool for glycosylation. In this paper, we report the gene isolation, via the CODEHOP-strategy, expression and characterization of a novel CGTase (CspCGT13) from a Carboxydocella sp. This enzyme is the first glycoside hydrolase isolated from the genus, indicating starch degradation via cyclodextrin production in the Carboxydocella strain. The fundamental reactivities of this novel CGTase are characterized and compared to two commercial CGTases, assayed under identical condition, in order to facilitate interpretation of the results. The comparison showed that the enzyme, CspCGT13, displayed high coupling activity using γ-CD as donor, despite preferentially forming α and β-CD in the cyclization reaction using wheat starch as substrate. Comparison of subsite conservation within previously characterized CGTases showed significant sequence variation in subsite -3 and -7, which may be important for the coupling activity.
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| 2. |
- Lundemo, Pontus, et al.
(författare)
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Eliminating hydrolytic activity without affecting the transglycosylation of a GH1 β-glucosidase
- 2017
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Ingår i: Applied Microbiology and Biotechnology. - : Springer Science and Business Media LLC. - 0175-7598 .- 1432-0614. ; 101:3, s. 1121-1131
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Tidskriftsartikel (refereegranskat)abstract
- Unveiling the determinants for transferase and hydrolase activity in glycoside hydrolases would allow using their vast diversity for creating novel transglycosylases, thereby unlocking an extensive toolbox for carbohydrate chemists. Three different amino acid substitutions at position 220 of a GH1 β-glucosidase from Thermotoga neapolitana caused an increase of the ratio of transglycosylation to hydrolysis (rs/rh) from 0.33 to 1.45–2.71. Further increase in rs/rh was achieved by modulation of pH of the reaction medium. The wild-type enzyme had a pH optimum for both hydrolysis and transglycosylation around 6 and reduced activity at higher pH. Interestingly, the mutants had constant transglycosylation activity over a broad pH range (5–10), while the hydrolytic activity was largely eliminated at pH 10. The results demonstrate that a combination of protein engineering and medium engineering can be used to eliminate the hydrolytic activity without affecting the transglycosylation activity of a glycoside hydrolase. The underlying factors for this success are pursued, and perturbations of the catalytic acid/base in combination with flexibility are shown to be important factors.
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| 3. |
- Lundemo, Pontus, et al.
(författare)
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Improved transferase/hydrolase ratio through rational design of a family 1 β-glucosidase from Thermotoga neapolitana.
- 2013
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Ingår i: Applied and Environmental Microbiology. - 0099-2240. ; 79:11, s. 3400-3405
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Tidskriftsartikel (refereegranskat)abstract
- Alkyl glycosides are attractive surfactants because of their high surface activity and good biodegradability and can be produced from renewable resources. Through enzymatic catalysis one can obtain well-defined alkyl glycosides, something that is very difficult using conventional chemistry. However, there is a need for better enzymes to get a commercially feasible process. A thermostable β-glucosidase from Thermotoga neapolitana, TnBgl1A, from the well-studied glycoside hydrolase family 1 was mutated in an attempt to improve its value for synthesis of alkyl glycosides. This was done by rational design using prior knowledge from structural homologues together with a recently generated model of the enzyme in question. Three out of four studied mutations increased the hydrolytic reaction rate in aqueous environment while none displayed this property in presence of an alcohol acceptor. This shows that even if the enzyme resides in a separate aqueous phase, the presence of an organic solvent has great influence. We could also show that a single amino acid replacement in a less studied part of the aglycone subsite, N220F, improves the specificity for transglycosylation 7-fold and thereby increases the potential yield of alkyl glycoside from 17 % to 58 %.
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| 4. |
- Lundemo, Pontus, et al.
(författare)
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Preparation of two glycoside hydrolases for use in micro-aqueous media
- 2014
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Ingår i: Journal of Molecular Catalysis B: Enzymatic. - : Elsevier BV. - 1873-3158 .- 1381-1177. ; 108, s. 1-6
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Tidskriftsartikel (refereegranskat)abstract
- Enzymatic synthesis of alkyl glycosides using glycoside hydrolases is well studied, but has yet to reach industrial scale, primarily due to limited yields. Reduced water content should increase yields by limiting the unwanted hydrolytic side reaction. However, previous studies have shown that a reduction in water content surprisingly favors hydrolysis over transglycosylation. In addition, glycoside hydrolases normally require a high degree of hydration to function efficiently. This study compares six enzyme preparation methods to improve resilience and activity of two glycoside hydrolases from Thermotoga neapolitana (TnBgl3B and TnBgl1A) in micro-aqueous hexanol. Indeed, when adsorbed onto Accurel MP-1000 both enzymes increasingly favored transglycosylation over hydrolysis at low hydration, in contrast to freeze-dried or untreated enzyme. Additionally, they displayed 17–70× higher reaction rates compared to freeze-dried enzyme at low water activity, while displaying comparable or lower activity for fully hydrated systems. These results provide valuable information for use of enzymes under micro-aqueous conditions and build toward utilizing the full synthetic potential of glycoside hydrolases.
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| 5. |
- Lundemo, Pontus
(författare)
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Transglycosylation by Glycoside Hydrolases - Production and modification of alkyl glycosides
- 2015
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- To enable the transition to a green, bio-based economy, an extensive enzymatic toolbox competitive to traditional chemical procedures is needed. One strong area for enzymes is carbohydrate chemistry, due to the over-functionalized nature of carbohydrates, difficult to handle in traditional chemistry. Glycosylation can be catalyzed by four main classes of enzymes, glycosyltransferases, glycoside phosphorylases, transglycosylases and glycoside hydrolases. For industrial implementation, transglycosylases are ideal catalysts that do not need the expensive activated donors associated with glycoside phosphorylases and glycosyltransferases. In addition, they completely lack the hydrolytic activity intrinsic in the closely related glycoside hydrolases. Unfortunately, very few transglycosylases with limited substrate specificities exist in nature, while a wide abundance of glycoside hydrolases are available. To expand the enzymatic toolbox for synthetic chemists it would be favorable to convert glycoside hydrolases into transglycosylases, by limiting their hydrolytic activity. This dissertation investigates the transglycosylation activity of glycoside hydrolases with synthesis and modification of alkyl glycosides, a widely applicable type of surfactants, as model reactions. Reduced hydrolysis for β-glycosidases from the thermophilic Thermotoga neapolitana was achieved through protein engineering, limiting water content and increasing pH. Complete elimination of the hydrolytic activity with maintained transglycosylation was achieved for synthesis of hexyl-β-D-glucoside and the factors resulting in the success are discussed. In addition, extension of the glycosidic part of alkyl glycosides through the coupling activity of cyclodextrin glucanotransferases is explored. An enzyme kinetics study was undertaken to deduce the optimal reaction conditions to promote coupling for a commercial enzyme. Moreover, a novel cyclodextrin glucanotransferase from Carboxydocella species was characterized, shown to have good coupling activity with γ-cyclodextrins as donor. This previously poorly studied donor can be used to extend the range of alkyl glycosides that can be produced and thereby the number of applications available.
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