| 1. |
- Aad, G., et al.
(författare)
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- 2014
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Tidskriftsartikel (refereegranskat)
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| 2. |
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| 4. |
- Kattge, Jens, et al.
(författare)
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TRY plant trait database - enhanced coverage and open access
- 2020
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Ingår i: Global Change Biology. - : Wiley-Blackwell. - 1354-1013 .- 1365-2486. ; 26:1, s. 119-188
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Tidskriftsartikel (refereegranskat)abstract
- Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
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| 5. |
- Bonham, LW, et al.
(författare)
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Genetic variation across RNA metabolism and cell death gene networks is implicated in the semantic variant of primary progressive aphasia
- 2019
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Ingår i: Scientific reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 9:1, s. 10854-
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Tidskriftsartikel (refereegranskat)abstract
- The semantic variant of primary progressive aphasia (svPPA) is a clinical syndrome characterized by neurodegeneration and progressive loss of semantic knowledge. Unlike many other forms of frontotemporal lobar degeneration (FTLD), svPPA has a highly consistent underlying pathology composed of TDP-43 (a regulator of RNA and DNA transcription metabolism). Previous genetic studies of svPPA are limited by small sample sizes and a paucity of common risk variants. Despite this, svPPA’s relatively homogenous clinicopathologic phenotype makes it an ideal investigative model to examine genetic processes that may drive neurodegenerative disease. In this study, we used GWAS metadata, tissue samples from pathologically confirmed frontotemporal lobar degeneration, and in silico techniques to identify and characterize protein interaction networks associated with svPPA risk. We identified 64 svPPA risk genes that interact at the protein level. The protein pathways represented in this svPPA gene network are critical regulators of RNA metabolism and cell death, such as SMAD proteins and NOTCH1. Many of the genes in this network are involved in TDP-43 metabolism. Contrary to the conventional notion that svPPA is a clinical syndrome with few genetic risk factors, our analyses show that svPPA risk is complex and polygenic in nature. Risk for svPPA is likely driven by multiple common variants in genes interacting with TDP-43, along with cell death,x` working in combination to promote neurodegeneration.
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| 13. |
- Manzoni, Claudia, et al.
(författare)
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Genome-wide analyses reveal a potential role for the MAPT, MOBP, and APOE loci in sporadic frontotemporal dementia
- 2024
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Ingår i: American Journal of Human Genetics. - 0002-9297. ; 111:7, s. 1316-1329
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Tidskriftsartikel (refereegranskat)abstract
- Frontotemporal dementia (FTD) is the second most common cause of early-onset dementia after Alzheimer disease (AD). Efforts in the field mainly focus on familial forms of disease (fFTDs), while studies of the genetic etiology of sporadic FTD (sFTD) have been less common. In the current work, we analyzed 4,685 sFTD cases and 15,308 controls looking for common genetic determinants for sFTD. We found a cluster of variants at the MAPT (rs199443; p = 2.5 × 10−12, OR = 1.27) and APOE (rs6857; p = 1.31 × 10−12, OR = 1.27) loci and a candidate locus on chromosome 3 (rs1009966; p = 2.41 × 10−8, OR = 1.16) in the intergenic region between RPSA and MOBP, contributing to increased risk for sFTD through effects on expression and/or splicing in brain cortex of functionally relevant in-cis genes at the MAPT and RPSA-MOBP loci. The association with the MAPT (H1c clade) and RPSA-MOBP loci may suggest common genetic pleiotropy across FTD and progressive supranuclear palsy (PSP) (MAPT and RPSA-MOBP loci) and across FTD, AD, Parkinson disease (PD), and cortico-basal degeneration (CBD) (MAPT locus). Our data also suggest population specificity of the risk signals, with MAPT and APOE loci associations mainly driven by Central/Nordic and Mediterranean Europeans, respectively. This study lays the foundations for future work aimed at further characterizing population-specific features of potential FTD-discriminant APOE haplotype(s) and the functional involvement and contribution of the MAPT H1c haplotype and RPSA-MOBP loci to pathogenesis of sporadic forms of FTD in brain cortex.
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| 14. |
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| 15. |
- Windhorst, Rogier A., et al.
(författare)
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JWST PEARLS. Prime extragalactic areas for reionization and lensing science : project overview and first results
- 2023
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Ingår i: Astronomical Journal. - : Institute of Physics (IOP). - 0004-6256 .- 1538-3881. ; 165:1
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Tidskriftsartikel (refereegranskat)abstract
- We give an overview and describe the rationale, methods, and first results from NIRCam images of the JWST “Prime Extragalactic Areas for Reionization and Lensing Science” (PEARLS) project. PEARLS uses up to eight NIRCam filters to survey several prime extragalactic survey areas: two fields at the North Ecliptic Pole (NEP); seven gravitationally lensing clusters; two high redshift protoclusters; and the iconic backlit VV 191 galaxy system to map its dust attenuation. PEARLS also includes NIRISS spectra for one of the NEP fields and NIRSpec spectra of two high-redshift quasars. The main goal of PEARLS is to study the epoch of galaxy assembly, active galactic nucleus (AGN) growth, and First Light. Five fields—the JWST NEP Time-Domain Field (TDF), IRAC Dark Field, and three lensing clusters—will be observed in up to four epochs over a year. The cadence and sensitivity of the imaging data are ideally suited to find faint variable objects such as weak AGN, high-redshift supernovae, and cluster caustic transits. Both NEP fields have sightlines through our Galaxy, providing significant numbers of very faint brown dwarfs whose proper motions can be studied. Observations from the first spoke in the NEP TDF are public. This paper presents our first PEARLS observations, their NIRCam data reduction and analysis, our first object catalogs, the 0.9–4.5 μm galaxy counts and Integrated Galaxy Light. We assess the JWST sky brightness in 13 NIRCam filters, yielding our first constraints to diffuse light at 0.9–4.5 μm. PEARLS is designed to be of lasting benefit to the community.
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| 16. |
- Baker, Paul A., et al.
(författare)
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The emerging field of geogenomics : Constraining geological problems with genetic data
- 2014
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Ingår i: Earth-Science Reviews. - : Elsevier BV. - 0012-8252 .- 1872-6828. ; 135, s. 38-47
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Tidskriftsartikel (refereegranskat)abstract
- The development of a genomics-derived discipline within geology is timely, as a result of major advances in acquiring and processing geologically relevant genetic data. This paper articulates the emerging field of geogenomics, which involves the use of large-scale genetic data to constrain geological hypotheses. The paper introduces geogenomics and discusses how hypotheses can be addressed through collaboration between geologists and evolutionary biologists. As an example, geogenomic methods are applied to evaluate competing hypotheses regarding the timing of the Andean uplift, the closure of the Isthmus of Panama, the onset of trans-Amazon drainage, and Quaternary climate variation in the Neotropics.
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| 17. |
- Capek, P. T., et al.
(författare)
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A plant-microbe interaction framework explaining nutrient effects on primary production
- 2018
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Ingår i: Nature Ecology & Evolution. - : Springer Science and Business Media LLC. - 2397-334X. ; 2:10, s. 1588-1596
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Tidskriftsartikel (refereegranskat)abstract
- In most terrestrial ecosystems, plant growth is limited by nitrogen and phosphorus. Adding either nutrient to soil usually affects primary production, but their effects can be positive or negative. Here we provide a general stoichiometric framework for interpreting these contrasting effects. First, we identify nitrogen and phosphorus limitations on plants and soil microorganisms using their respective nitrogen to phosphorus critical ratios. Second, we use these ratios to show how soil microorganisms mediate the response of primary production to limiting and non-limiting nutrient addition along a wide gradient of soil nutrient availability. Using a meta-analysis of 51 factorial nitrogen-phosphorus fertilization experiments conducted across multiple ecosystems, we demonstrate that the response of primary production to nitrogen and phosphorus additions is accurately predicted by our stoichiometric framework. The only pattern that could not be predicted by our original framework suggests that nitrogen has not only a structural function in growing organisms, but also a key role in promoting plant and microbial nutrient acquisition. We conclude that this stoichiometric framework offers the most parsimonious way to interpret contrasting and, until now, unresolved responses of primary production to nutrient addition in terrestrial ecosystems.
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| 18. |
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| 20. |
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| 21. |
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| 22. |
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| 23. |
- Lennon, J. T., et al.
(författare)
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Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction
- 2024
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Ingår i: mBio. - 2161-2129 .- 2150-7511.
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Tidskriftsartikel (refereegranskat)abstract
- Climate change jeopardizes human health, global biodiversity, and sustainability of the biosphere. To make reliable predictions about climate change, scientists use Earth system models (ESMs) that integrate physical, chemical, and biological processes occurring on land, the oceans, and the atmosphere. Although critical for catalyzing coupled biogeochemical processes, microorganisms have traditionally been left out of ESMs. Here, we generate a "top 10" list of priorities, opportunities, and challenges for the explicit integration of microorganisms into ESMs. We discuss the need for coarse-graining microbial information into functionally relevant categories, as well as the capacity for microorganisms to rapidly evolve in response to climate-change drivers. Microbiologists are uniquely positioned to collect novel and valuable information necessary for next-generation ESMs, but this requires data harmonization and transdisciplinary collaboration to effectively guide adaptation strategies and mitigation policy.
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| 24. |
- Prusakov, Pavel, et al.
(författare)
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A global point prevalence survey of antimicrobial use in neonatal intensive care units : The no-more-antibiotics and resistance (NO-MAS-R) study
- 2021
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Ingår i: eClinicalMedicine. - : Elsevier. - 2589-5370. ; 32
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Tidskriftsartikel (refereegranskat)abstract
- Background: Global assessment of antimicrobial agents prescribed to infants in the neonatal intensive care unit (NICU) may inform antimicrobial stewardship efforts.Methods: We conducted a one-day global point prevalence study of all antimicrobials provided to NICU infants. Demographic, clinical, and microbiologic data were obtained including NICU level, census, birth weight, gestational/chronologic age, diagnoses, antimicrobial therapy (reason for use; length of therapy), antimicrobial stewardship program (ASP), and 30-day in-hospital mortality.Findings: On July 1, 2019, 26% of infants (580/2,265; range, 0-100%; median gestational age, 33 weeks; median birth weight, 1800 g) in 84 NICUs (51, high-income; 33, low-to-middle income) from 29 countries (14, high-income; 15, low-to-middle income) in five continents received >= 1 antimicrobial agent (92%, antibacterial; 19%, antifungal; 4%, antiviral). The most common reasons for antibiotic therapy were "rule-out" sepsis (32%) and "culture-negative" sepsis (16%) with ampicillin (40%), gentamicin (35%), amikacin (19%), vancomycin (15%), and meropenem (9%) used most frequently. For definitive treatment of presumed/confirmed infection, vancomycin (26%), amikacin (20%), and meropenem (16%) were the most prescribed agents. Length of therapy for culture-positive and "culture-negative" infections was 12 days (median; IQR, 8-14) and 7 days (median; IQR, 5-10), respectively. Mortality was 6% (42%, infection-related). An NICU ASP was associated with lower rate of antibiotic utilization (p = 0.02).Interpretation: Global NICU antibiotic use was frequent and prolonged regardless of culture results. NICU-specific ASPs were associated with lower antibiotic utilization rates, suggesting the need for their implementation worldwide.
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| 25. |
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| 26. |
- Brangarí, Albert C., et al.
(författare)
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A soil microbial model to analyze decoupled microbial growth and respiration during soil drying and rewetting
- 2020
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Ingår i: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717 .- 1879-3428. ; 148
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Tidskriftsartikel (refereegranskat)abstract
- Soils are continuously exposed to cycles of drying and rewetting (D/RW), which drive pronounced fluctuations in soil carbon (C) fluxes. These C dynamics are characterized by a decoupled behavior between microbial biomass synthesis (growth) and CO2 production (respiration). In general, respiration rates peak shortly after RW and subsequently decrease, while the growth peaks lag several hours behind. Despite the significance of these dynamics for the soil C budget and the global C cycle, this feature has so far been overlooked in biogeochemical models and the underlying mechanisms are still unclear. We present a new process-based soil microbial model that incorporates a wide range of physical, chemical and biological mechanisms thought to affect D/RW responses. Results show that the model is able to capture the respiration dynamics in soils exposed to repeated cycles of D/RW, and also to single events in which moisture was kept constant after RW. In addition, the model reproduces, for the first time, the responses of microbial growth to D/RW. We have identified the C accumulation during dry periods, the drought-legacy effect on the synthesis of new biomass, and osmoregulation as the strongest candidate mechanisms to explain these C dynamics. The model outputs are further compared to earlier process-based models, highlighting the advances generated by the new model. This work thus represents a step towards unravelling the microbial responses to drought and rainfall events, with implications for our understanding of C cycle and C sequestration in soils.
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| 27. |
- Brangari, Albert C., et al.
(författare)
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Ecological and soil hydraulic implications of microbial responses to stress - A modeling analysis
- 2018
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Ingår i: Advances in Water Resources. - : Elsevier BV. - 0309-1708 .- 1872-9657. ; 116, s. 178-194
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Tidskriftsartikel (refereegranskat)abstract
- A better understanding of microbial dynamics in porous media may lead to improvements in the design and management of a number of technological applications, ranging from the degradation of contaminants to the optimization of agricultural systems. To this aim, there is a recognized need for predicting the proliferation of soil microbial biomass (often organized in biofilms) under different environments and stresses. We present a general multi-compartment model to account for physiological responses that have been extensively reported in the literature. The model is used as an explorative tool to elucidate the ecological and soil hydraulic consequences of microbial responses, including the production of extracellular polymeric substances (EPS), the induction of cells into dormancy, and the allocation and reuse of resources between biofilm compartments. The mechanistic model is equipped with indicators allowing the microorganisms to monitor environmental and biological factors and react according to the current stress pressures. The feedbacks of biofilm accumulation on the soil water retention are also described. Model runs simulating different degrees of substrate and water shortage show that adaptive responses to the intensity and type of stress provide a clear benefit to microbial colonies. Results also demonstrate that the model may effectively predict qualitative patterns in microbial dynamics supported by empirical evidence, thereby improving our understanding of the effects of pore-scale physiological mechanisms on the soil macroscale phenomena.
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| 28. |
- Brangarí, Albert C., et al.
(författare)
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The mechanisms underpinning microbial resilience to drying and rewetting - A model analysis
- 2021
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Ingår i: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717 .- 1879-3428. ; 162
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Tidskriftsartikel (refereegranskat)abstract
- Soil moisture is one of the most important factors controlling the activity and diversity of soil microorganisms. Soils exposed to pronounced cycles of drying and rewetting (D/RW) exhibit disconnected patterns in microbial growth and respiration at RW. These patterns differ depending on the preceding soil moisture history, leading to contrasting amounts of carbon retained in the soil as biomass versus that respired as CO2. The mechanisms underlying these microbially-induced dynamics are still unclear. In this work, we used the process-based soil microbial model EcoSMMARTS to offer candidate explanations for: i) how soil moisture can shape the structure of microbial communities, ii) how soil moisture history affects the responses during D/RW, iii) what microbial mechanisms control the shape, intensity and duration of these responses, and iv) what carbon sources sustain the increased biogeochemical rates after RW. We first evaluated the response to D/RW in bacterial communities previously exposed to two different stress histories (‘moderate’ vs ‘severe’ soil moisture regimes). We found that both the history of soil moisture and the harshness of the dry period preceding the rewetting shaped the structure and physiology of microbial communities. The characteristics of these communities determined the harshness experienced and the nature of the responses to RW obtained. Modelled communities exposed to extended severe conditions showed a resilient response to D/RW, whereas those exposed to moderate environments exhibited a more sensitive response. We then interchanged the soil moisture regimes and found that the progressive adaptation of microbial physiology and structure to new environmental conditions resulted in a switch in the response patterns. These microbial changes also determined the contribution of biomass synthesis, osmoregulation, mineralization by cell residues, and disruption of soil aggregates to CO2 emissions.
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| 29. |
- Fischer, Benjamin M. C., et al.
(författare)
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Improving agricultural water use efficiency with biochar - A synthesis of biochar effects on water storage and fluxes across scales
- 2019
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Ingår i: Science of the Total Environment. - : Elsevier BV. - 0048-9697 .- 1879-1026. ; 657, s. 853-862
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Tidskriftsartikel (refereegranskat)abstract
- There is an urgent need to develop agricultural methods that balance water supply and demand while at the same time improve resilience to climate variability. A promising instrument to address this need is biochar - a charcoal made from pyrolyzed organic material. However, it is often unclear how, if at all, biochar improves soil water availability, plant water consumption rates and crop yields. To address this question, we synthesized literature-derived observational data and evaluated the effects of biochar on evapotranspiration using a minimal soil water balance model. Results from the model were interpreted in the Budyko framework to assess how climatic conditions mediate the impacts of biochar on water fluxes. Our analysis of literature-derived observational data showed that while biochar addition generally increases the soil water holding capacity, it can have variable impacts on soil water retention relative to control conditions. Our modelling demonstrated that biochar increases long-term evapotranspiration rates, and therefore plant water availability, by increasing soil water retention capacity - especially in water-limited regions. Biochar amendments generally increased crop yields (75% of the compiled studies) and, in several cases (35% of the compiled studies), biochar amendments simultaneously increased crop yield and water use efficiencies. Hence, while biochar amendments are promising, the potential for variable impact highlights the need for targeted research on how biochar affects the soil-plant-water cycle.
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| 30. |
- Fischer, Benjamin M. C., et al.
(författare)
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Investigating the impacts of biochar on water fluxes in a rice experiment in the dry corridor of Central America, Costa Rica
- 2022
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Ingår i: Hydrological Processes. - : Wiley. - 0885-6087 .- 1099-1085. ; 36:12
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Tidskriftsartikel (refereegranskat)abstract
- Amending soils with biochar, a pyrolyzed organic material, is an emerging practice to potentially increase plant available water and reduce the risks associated with climatic variability in traditionally-rainfed tropical agricultural systems. To investigate the impacts of biochar amendment on soil water storage relative to non-amended soils, we performed an upland rice field experiment in a tropical seasonally dry region of Costa Rica consisting of plots with two different biochar amendments and a control plot. Across all plots, we collected hydrometric and isotopic data (δ18O and δ2H of rain, mobile soil, ground and rice xylem water). We observed that the soil water retention curves for biochar treated soils shifted, indicating that rice plants had 2% to 7% more water available throughout the growing season relative to the control plots and thus could withstand dry spells up to seven extra days. Furthermore, the isotopic composition of plant water in biochar and control treatments were rather similar, indicating that rice plants in different treatments likely consumed similar water. Hence, we observed that biochar amendments can stabilize water supplies for the rice plants; however, still supplemental irrigation was required to facilitate plant growth during extended dry periods. Ultimately, our findings indicate, that biochar amendments can complement, but not necessarily replace, other water management strategies to help reduce the threat of rainfall variability to rainfed agriculture in tropical regions.
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| 31. |
- Fischer, Benjamin M. C., et al.
(författare)
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Mojito, Anyone? An Exploration of Low-Tech Plant Water Extraction Methods for Isotopic Analysis Using Locally-Sourced Materials
- 2019
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Ingår i: Frontiers in Earth Science. - : Frontiers Media SA. - 2296-6463. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- The stable isotope composition of water (delta O-18 and delta H-2) is an increasingly utilized tool to distinguish between different pools of water along the soil-plant-atmosphere continuum (SPAC) and thus provides information on how plants use water. Clear bottlenecks for the ubiquitous application of isotopic analysis across the SPAC are the relatively high-energy and specialized materials required to extract water from plant materials. Could simple and cost-effective do-it-yourself MacGyver methods be sufficient for extracting plant water for isotopic analysis? This study develops a suite of novel techniques for plant water extraction and compares them to a standard research-grade water extraction method. Our results show that low-tech methods using locally-sourced materials can indeed extract plant water consistently and comparably to what is done with other state-of-the-art methods. Further, our findings show that other factors play a larger role than water extraction methods in achieving the desired accuracy and precision of stable isotope composition: (1) appropriate transport, (2) fast sample processing and (3) efficient workflows. These results are methodologically promising for the rapid expansion of isotopic investigations, especially for citizen science and/or school projects or in remote areas, where improved SPAC understanding could help manage water resources to fulfill agricultural and other competing water needs.
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| 32. |
- Goadsby, Peter, et al.
(författare)
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Almotriptan and zolmitriptan in the acute treatment of migraine
- 2007
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Ingår i: Acta Neurol Scand. ; 115:1, s. 34-40
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Tidskriftsartikel (refereegranskat)abstract
- OBJECTIVE: To compare almotriptan and zolmitriptan in the treatment of acute migraine. METHODS: This multicentre, double-blind trial randomized adult migraineurs to almotriptan 12.5 mg (n = 532) or zolmitriptan 2.5 mg (n = 530) for the treatment of a single migraine attack. The primary end point was sustained pain free plus no adverse events (SNAE); other end points included pain relief and pain free at several time points, sustained pain free, headache recurrence, use of rescue medication, functional impairment, time lost because of migraine, treatment acceptability, and overall treatment satisfaction. RESULTS: No significant difference was seen in SNAE (almotriptan 29.2% vs zolmitriptan 31.8%) or the other efficacy end points measured. The incidence of triptan-associated AEs and triptan-associated central nervous system AEs was significantly lower for patients receiving almotriptan compared to zolmitriptan. CONCLUSIONS: Almotriptan and zolmitriptan were associated with similar efficacy and overall tolerability in the treatment of acute migraine. Almotriptan was associated with a significantly lower rate of triptan-associated AEs.
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| 33. |
- Homyak, P. M., et al.
(författare)
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Effects of altered dry-season length and plant inputs on soluble soil carbon
- 2018
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Ingår i: Ecology. - : Wiley. - 0012-9658 .- 1939-9170. ; 99:10, s. 2348-2362
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Tidskriftsartikel (refereegranskat)abstract
- Soil moisture controls microbial activity and soil carbon cycling. Because microbial activity decreases as soils dry, decomposition of soil organic matter (SOM) is thought to decrease with increasing drought length. Yet, microbial biomass and a pool of water‐extractable organic carbon (WEOC) can increase as soils dry, perhaps implying microbes may continue to break down SOM even if drought stressed. Here, we test the hypothesis that WEOC increases as soils dry because exoenzymes continue to break down litter, while their products accumulate because they cannot diffuse to microbes. To test this hypothesis, we manipulated field plots by cutting off litter inputs and by irrigating and excluding precipitation inputs to extend or shorten the length of the dry season. We expected that the longer the soils would remain dry, the more WEOC would accumulate in the presence of litter, whereas shortening the length of the dry season, or cutting off litter inputs, would reduce WEOC accumulation. Lastly, we incubated grass roots in the laboratory and measured the concentration of reducing sugars and potential hydrolytic enzyme activities, strictly to understand the mechanisms whereby exoenzymes break down litter over the dry season. As expected, extending dry season length increased WEOC concentrations by 30% above the 108 μg C/g measured in untreated plots, whereas keeping soils moist prevented WEOC from accumulating. Contrary to our hypothesis, excluding plant litter inputs actually increased WEOC concentrations by 40% above the 105 μg C/g measured in plots with plants. Reducing sugars did not accumulate in dry senesced roots in our laboratory incubation. Potential rates of reducing sugar production by hydrolytic enzymes ranged from 0.7 to 10 μmol·g−1·h−1 and far exceeded the rates of reducing sugar accumulation (~0.001 μmol·g−1·h−1). Our observations do not support the hypothesis that exoenzymes continue to break down litter to produce WEOC in dry soils. Instead, we develop the argument that physical processes are more likely to govern short‐term WEOC dynamics via slaking of microaggregates that stabilize SOM and through WEOC redistribution when soils wet up, as well as through less understood effects of drought on the soil mineral matrix.
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| 34. |
- Jin, Hongxiao, et al.
(författare)
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Drone-Based Hyperspectral and Thermal Imagery for Quantifying Upland Rice Productivity and Water Use Efficiency after Biochar Application
- 2021
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Ingår i: Remote Sensing. - : MDPI AG. - 2072-4292. ; 13:10
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Tidskriftsartikel (refereegranskat)abstract
- Miniature hyperspectral and thermal cameras onboard lightweight unmanned aerial vehicles (UAV) bring new opportunities for monitoring land surface variables at unprecedented fine spatial resolution with acceptable accuracy. This research applies hyperspectral and thermal imagery from a drone to quantify upland rice productivity and water use efficiency (WUE) after biochar application in Costa Rica. The field flights were conducted over two experimental groups with bamboo biochar (BC1) and sugarcane biochar (BC2) amendments and one control (C) group without biochar application. Rice canopy biophysical variables were estimated by inverting a canopy radiative transfer model on hyperspectral reflectance. Variations in gross primary productivity (GPP) and WUE across treatments were estimated using light-use efficiency and WUE models respectively from the normalized difference vegetation index (NDVI), canopy chlorophyll content (CCC), and evapotranspiration rate. We found that GPP was increased by 41.9 +/- 3.4% in BC1 and 17.5 +/- 3.4% in BC2 versus C, which may be explained by higher soil moisture after biochar application, and consequently significantly higher WUEs by 40.8 +/- 3.5% in BC1 and 13.4 +/- 3.5% in BC2 compared to C. This study demonstrated the use of hyperspectral and thermal imagery from a drone to quantify biochar effects on dry cropland by integrating ground measurements and physical models.
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| 35. |
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| 37. |
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| 38. |
- Low, Donald E., et al.
(författare)
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Guidelines for Perioperative Care in Esophagectomy : Enhanced Recovery After Surgery (ERAS®) Society Recommendations
- 2019
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Ingår i: World Journal of Surgery. - : Springer. - 0364-2313 .- 1432-2323. ; 43:2, s. 299-330
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Forskningsöversikt (refereegranskat)abstract
- INTRODUCTION: Enhanced recovery after surgery (ERAS) programs provide a format for multidisciplinary care and has been shown to predictably improve short term outcomes associated with surgical procedures. Esophagectomy has historically been associated with significant levels of morbidity and mortality and as a result routine application and audit of ERAS guidelines specifically designed for esophageal resection has significant potential to improve outcomes associated with this complex procedure.METHODS: A team of international experts in the surgical management of esophageal cancer was assembled and the existing literature was identified and reviewed prior to the production of the guidelines. Well established procedure specific components of ERAS were reviewed and updated with changes relevant to esophagectomy. Procedure specific, operative and technical sections were produced utilizing the best current level of evidence. All sections were rated regarding the level of evidence and overall recommendation according to the evaluation (GRADE) system.RESULTS: Thirty-nine sections were ultimately produced and assessed for quality of evidence and recommendations. Some sections were completely new to ERAS programs due to the fact that esophagectomy is the first guideline with a thoracic component to the procedure.CONCLUSIONS: The current ERAS society guidelines should be reviewed and applied in all centers looking to improve outcomes and quality associated with esophageal resection.
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| 39. |
- Manzoni, Stefano, et al.
(författare)
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Intracellular Storage Reduces Stoichiometric Imbalances in Soil Microbial Biomass - A Theoretical Exploration
- 2021
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Ingår i: Frontiers in Ecology and Evolution. - : Frontiers Media SA. - 2296-701X. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Microbial intracellular storage is key to defining microbial resource use strategies and could contribute to carbon (C) and nutrient cycling. However, little attention has been devoted to the role of intracellular storage in soil processes, in particular from a theoretical perspective. Here we fill this gap by integrating intracellular storage dynamics into a microbially explicit soil C and nutrient cycling model. Two ecologically relevant modes of storage are considered: reserve storage, in which elements are routed to a storage compartment in proportion to their uptake rate, and surplus storage, in which elements in excess of microbial stoichiometric requirements are stored and limiting elements are remobilized from storage to fuel growth and microbial maintenance. Our aim is to explore with this model how these different storage modes affect the retention of C and nutrients in active microbial biomass under idealized conditions mimicking a substrate pulse experiment. As a case study, we describe C and phosphorus (P) dynamics using literature data to estimate model parameters. Both storage modes enhance the retention of elements in microbial biomass, but the surplus storage mode is more effective to selectively store or remobilize C and nutrients according to microbial needs. Enhancement of microbial growth by both storage modes is largest when the substrate C:nutrient ratio is high (causing nutrient limitation after substrate addition) and the amount of added substrate is large. Moreover, storage increases biomass nutrient retention and growth more effectively when resources are supplied in a few large pulses compared to several smaller pulses (mimicking a nearly constant supply), which suggests storage to be particularly relevant in highly dynamic soil microhabitats. Overall, our results indicate that storage dynamics are most important under conditions of strong stoichiometric imbalance and may be of high ecological relevance in soil environments experiencing large variations in C and nutrient supply.
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| 40. |
- Martin, Philip A., et al.
(författare)
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Meta-analysis reveals that the effects of precipitation change on soil and litter fauna in forests depend on body size
- 2024
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Ingår i: Global Change Biology. - 1354-1013 .- 1365-2486. ; 30:5
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Tidskriftsartikel (refereegranskat)abstract
- Anthropogenic climate change is altering precipitation regimes at a global scale. While precipitation changes have been linked to changes in the abundance and diversity of soil and litter invertebrate fauna in forests, general trends have remained elusive due to mixed results from primary studies. We used a meta-analysis based on 430 comparisons from 38 primary studies to address associated knowledge gaps, (i) quantifying impacts of precipitation change on forest soil and litter fauna abundance and diversity, (ii) exploring reasons for variation in impacts and (iii) examining biases affecting the realism and accuracy of experimental studies. Precipitation reductions led to a decrease of 39% in soil and litter fauna abundance, with a 35% increase in abundance under precipitation increases, while diversity impacts were smaller. A statistical model containing an interaction between body size and the magnitude of precipitation change showed that mesofauna (e.g. mites, collembola) responded most to changes in precipitation. Changes in taxonomic richness were related solely to the magnitude of precipitation change. Our results suggest that body size is related to the ability of a taxon to survive under drought conditions, or to benefit from high precipitation. We also found that most experiments manipulated precipitation in a way that aligns better with predicted extreme climatic events than with predicted average annual changes in precipitation and that the experimental plots used in experiments were likely too small to accurately capture changes for mobile taxa. The relationship between body size and response to precipitation found here has far-reaching implications for our ability to predict future responses of soil biodiversity to climate change and will help to produce more realistic mechanistic soil models which aim to simulate the responses of soils to global change.
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| 41. |
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| 42. |
- Minoia, F, et al.
(författare)
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Dissecting the heterogeneity of macrophage activation syndrome complicating systemic juvenile idiopathic arthritis
- 2015
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Ingår i: The Journal of rheumatology. - : The Journal of Rheumatology. - 0315-162X .- 1499-2752. ; 42:6, s. 994-1001
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Tidskriftsartikel (refereegranskat)abstract
- To seek insights into the heterogeneity of macrophage activation syndrome (MAS) complicating systemic juvenile idiopathic arthritis (sJIA) through the analysis of a large patient sample collected in a multinational survey.Methods.International pediatric rheumatologists and hemato-oncologists entered their patient data, collected retrospectively, in a Web-based database. The demographic, clinical, laboratory, histopathologic, therapeutic, and outcome data were analyzed in relation to (1) geographic location of caring hospital, (2) subspecialty of attending physician, (3) demonstration of hemophagocytosis, and (4) severity of clinical course.Results.A total of 362 patients were included by 95 investigators from 33 countries. Demographic, clinical, laboratory, and histopathologic features were comparable among patients seen in diverse geographic areas or by different pediatric specialists. Patients seen in North America were given biologics more frequently. Patients entered by pediatric hemato-oncologists were treated more commonly with biologics and etoposide, whereas patients seen by pediatric rheumatologists more frequently received cyclosporine. Patients with demonstration of hemophagocytosis had shorter duration of sJIA at MAS onset, higher prevalence of hepatosplenomegaly, lower levels of platelets and fibrinogen, and were more frequently administered cyclosporine, intravenous immunoglobulin (IVIG), and etoposide. Patients with severe course were older, had longer duration of sJIA at MAS onset, had more full-blown clinical picture, and were more commonly given cyclosporine, IVIG, and etoposide.Conclusion.The clinical spectrum of MAS is comparable across patients seen in different geographic settings or by diverse pediatric subspecialists. There was a disparity in the therapeutic choices among physicians that underscores the need to establish uniform therapeutic protocols.
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| 43. |
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| 44. |
- Nilsson, Magnus, et al.
(författare)
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Neoadjuvant Chemoradiotherapy and Surgery for Esophageal Squamous Cell Carcinoma Versus Definitive Chemoradiotherapy With Salvage Surgery as Needed : The Study Protocol for the Randomized Controlled NEEDS Trial
- 2022
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Ingår i: Frontiers in Oncology. - : Frontiers Media S.A.. - 2234-943X. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- Background: The globally dominant treatment with curative intent for locally advanced esophageal squamous cell carcinoma (ESCC) is neoadjuvant chemoradiotherapy (nCRT) with subsequent esophagectomy. This multimodal treatment leads to around 60% overall 5-year survival, yet with impaired post-surgical quality of life. Observational studies indicate that curatively intended chemoradiotherapy, so-called definitive chemoradiotherapy (dCRT) followed by surveillance of the primary tumor site and regional lymph node stations and surgery only when needed to ensure local tumor control, may lead to similar survival as nCRT with surgery, but with considerably less impairment of quality of life. This trial aims to demonstrate that dCRT, with selectively performed salvage esophagectomy only when needed to achieve locoregional tumor control, is non-inferior regarding overall survival, and superior regarding health-related quality of life (HRQOL), compared to nCRT followed by mandatory surgery, in patients with operable, locally advanced ESCC.Methods: This is a pragmatic open-label, randomized controlled phase III, multicenter trial with non-inferiority design with regard to the primary endpoint overall survival and a superiority hypothesis for the experimental intervention dCRT with regard to the main secondary endpoint global HRQOL one year after randomization. The control intervention is nCRT followed by preplanned surgery and the experimental intervention is dCRT followed by surveillance and salvage esophagectomy only when needed to secure local tumor control. A target sample size of 1200 randomized patients is planned in order to reach 462 events (deaths) during follow-up.
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| 45. |
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| 46. |
- Ronco, Claudio, et al.
(författare)
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Blood flow distribution in sorbent beds : analysis of a new sorbent device for hemoperfusion
- 2000
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Ingår i: International Journal of Artificial Organs. - 0391-3988 .- 1724-6040. ; 23:2, s. 125-130
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Tidskriftsartikel (refereegranskat)abstract
- A new polymer-based sorbent cartridge has been recently developed for enhancing middle molecule removal during hemodialysis. The cartridge (Betasorb, Renaltech, New York, USA) has been designed to be placed in series with the dialyzer in the blood circuit. It is therefore important to evaluate the distribution of flow into the blood compartment of the device in order to assess if the surface of the sorbent is utilized to the best. For this purpose, a special imaging technique was utilized. Cartridges were analyzed during a simulated in vitro circulation at 250 and 350 ml/min of blood flow and 25% and 40% hematocrit. Cartridges were placed in vertical position and a cross longitudinal section 1 cm thick was analyzed in sequence by a helical scanner. Dye was injected into the arterial inlet and the progressive distribution was evaluated by sequential densitometrical measures carried out automatically by the machine. The sequential images analyzed by the scanner demonstrated excellent distribution of the flow in the blood compartment with minimal difference between the central and the peripheral regions of the compartment. In particular the following flow velocity pattern could be observed under the different experimental conditions tested. We may conclude that the cartridge design is adequate and no channelling effects could be detected in the blood compartment. The flow distribution is slightly affected by changes in flow rate and hematocrit showing an optimal utilization of the available surface for molecule adsorption.
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| 47. |
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| 48. |
- Shi, Andong, et al.
(författare)
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Substrate spatial heterogeneity reduces soil microbial activity
- 2021
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Ingår i: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717 .- 1879-3428. ; 152
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Tidskriftsartikel (refereegranskat)abstract
- Soil heterogeneity influences microbial access to substrates and creates habitats varying in substrate concentrations, thus leading to local variations in carbon (C) dynamics. Based on theoretical considerations, we expected that higher heterogeneity would decrease microbial activity. To test this hypothesis, we modified substrate spatial heterogeneity using 3D-printed cylinders with four compartments (either preventing or allowing diffusion between compartments). The same total amount of glucose (1.5 mg glucose C per cylinder) was added either to one compartment (highest local concentration, 2.0 mg glucose C g(-1) soil, and highest heterogeneity), to two (medium concentration, 1.0 mg glucose C g(-1) soil, and intermediate heterogeneity), or to four compartments (lowest local concentration, 0.5 mg glucose C g(-1) soil, and equivalent to homogeneous conditions). Thus, we experimentally created a gradient of substrate spatial heterogeneity. The 3D cylinders containing soil were transferred into standard calorimetry ampoules and were incubated in isothermal calorimeters to monitor soil heat dissipation rates as a proxy of soil microbial activity over 51 h at 18 degrees C. When diffusion among compartments was prevented, the most heterogeneous treatment showed the lowest heat dissipation rates, despite having the highest local substrate concentration. Compared to homogeneous conditions, the heat dissipation rate from the most heterogeneous treatment was 110% lower at the beginning of the experiment (12.7 mu J g(-1) soil s(-1)) and 50% lower when heat dissipation rates reached a peak (72.6 mu J g(-1) soil s(-1)). Moreover, the peak was delayed by approximately 2 h compared to the most homogeneous treatment. When diffusion among compartments was allowed, the effect of substrate spatial heterogeneity on microbial activity was strongly diminished. Our findings emphasize the influence of substrate spatial heterogeneity on soil microbial dynamics, highlighting the importance of including it in C cycling models for a better understanding of soil C dynamics.
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| 49. |
- Sierra, C. A., et al.
(författare)
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The muddle of ages, turnover, transit, and residence times in the carbon cycle
- 2017
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 23:5, s. 1763-1773
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Comparisons among ecosystem models or ecosystem dynamics along environmental gradients commonly rely on metrics that integrate different processes into a useful diagnostic. Terms such as age, turnover, residence, and transit times are often used for this purpose; however, these terms are variably defined in the literature and in many cases, calculations ignore assumptions implicit in their formulas. The aim of this opinion piece was i) to make evident these discrepancies and the incorrect use of formulas, ii) highlight recent results that simplify calculations and may help to avoid confusion, and iii) propose the adoption of simple and less ambiguous terms.
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| 50. |
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