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| 2. |
- Tabiri, S, et al.
(författare)
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- 2021
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swepub:Mat__t
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| 3. |
- Bravo, L, et al.
(författare)
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- 2021
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swepub:Mat__t
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| 4. |
- Khatri, C, et al.
(författare)
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Outcomes after perioperative SARS-CoV-2 infection in patients with proximal femoral fractures: an international cohort study
- 2021
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Ingår i: BMJ open. - : BMJ. - 2044-6055. ; 11:11, s. e050830-
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Tidskriftsartikel (refereegranskat)abstract
- Studies have demonstrated high rates of mortality in people with proximal femoral fracture and SARS-CoV-2, but there is limited published data on the factors that influence mortality for clinicians to make informed treatment decisions. This study aims to report the 30-day mortality associated with perioperative infection of patients undergoing surgery for proximal femoral fractures and to examine the factors that influence mortality in a multivariate analysis.SettingProspective, international, multicentre, observational cohort study.ParticipantsPatients undergoing any operation for a proximal femoral fracture from 1 February to 30 April 2020 and with perioperative SARS-CoV-2 infection (either 7 days prior or 30-day postoperative).Primary outcome30-day mortality. Multivariate modelling was performed to identify factors associated with 30-day mortality.ResultsThis study reports included 1063 patients from 174 hospitals in 19 countries. Overall 30-day mortality was 29.4% (313/1063). In an adjusted model, 30-day mortality was associated with male gender (OR 2.29, 95% CI 1.68 to 3.13, p<0.001), age >80 years (OR 1.60, 95% CI 1.1 to 2.31, p=0.013), preoperative diagnosis of dementia (OR 1.57, 95% CI 1.15 to 2.16, p=0.005), kidney disease (OR 1.73, 95% CI 1.18 to 2.55, p=0.005) and congestive heart failure (OR 1.62, 95% CI 1.06 to 2.48, p=0.025). Mortality at 30 days was lower in patients with a preoperative diagnosis of SARS-CoV-2 (OR 0.6, 95% CI 0.6 (0.42 to 0.85), p=0.004). There was no difference in mortality in patients with an increase to delay in surgery (p=0.220) or type of anaesthetic given (p=0.787).ConclusionsPatients undergoing surgery for a proximal femoral fracture with a perioperative infection of SARS-CoV-2 have a high rate of mortality. This study would support the need for providing these patients with individualised medical and anaesthetic care, including medical optimisation before theatre. Careful preoperative counselling is needed for those with a proximal femoral fracture and SARS-CoV-2, especially those in the highest risk groups.Trial registration numberNCT04323644
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| 7. |
- Botvinik-Nezer, Rotem, et al.
(författare)
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Variability in the analysis of a single neuroimaging dataset by many teams
- 2020
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 582, s. 84-88
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Tidskriftsartikel (refereegranskat)abstract
- Data analysis workflows in many scientific domains have become increasingly complex and flexible. Here we assess the effect of this flexibility on the results of functional magnetic resonance imaging by asking 70 independent teams to analyse the same dataset, testing the same 9 ex-ante hypotheses(1). The flexibility of analytical approaches is exemplified by the fact that no two teams chose identical workflows to analyse the data. This flexibility resulted in sizeable variation in the results of hypothesis tests, even for teams whose statistical maps were highly correlated at intermediate stages of the analysis pipeline. Variation in reported results was related to several aspects of analysis methodology. Notably, a meta-analytical approach that aggregated information across teams yielded a significant consensus in activated regions. Furthermore, prediction markets of researchers in the field revealed an overestimation of the likelihood of significant findings, even by researchers with direct knowledge of the dataset(2-5). Our findings show that analytical flexibility can have substantial effects on scientific conclusions, and identify factors that may be related to variability in the analysis of functional magnetic resonance imaging. The results emphasize the importance of validating and sharing complex analysis workflows, and demonstrate the need for performing and reporting multiple analyses of the same data. Potential approaches that could be used to mitigate issues related to analytical variability are discussed. The results obtained by seventy different teams analysing the same functional magnetic resonance imaging dataset show substantial variation, highlighting the influence of analytical choices and the importance of sharing workflows publicly and performing multiple analyses.
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| 24. |
- Kivimäki, Antti, et al.
(författare)
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An energy resolved electron-ion coincidence study near the S 2p thresholds of the SF6 molecule
- 2003
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Ingår i: Journal of Physics B. - : IOP Publishing. - 0953-4075 .- 1361-6455. ; 36:4, s. 781-791
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Tidskriftsartikel (refereegranskat)abstract
- The fragmentation dynamics of the SF6 molecule following the excitations of S 2p electrons into unoccupied molecular orbitals has been studied using the energy-resolved electron-ion coincidence technique. Fragmentation patterns were found to depend on the particular excitation and on the electronic state of the molecular ion. The spectator resonant Auger decay at the 2p --> 6a(1g) resonance induces changes in the ion distributions as compared to direct photoionization. Furthermore, coincidence spectra related to the same Auger structure display different ion abundances at the 2t(2g) and 4e(g) shape resonances. Differences were also found in the Auger decay spectra. These findings give further support for the previously suggested many-electron character of the 4e(g) shape resonance.
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| 25. |
- Melero-Asensio, I., et al.
(författare)
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Geophysical signature of Malingen, the minor crater of the Lockne-Malingen doublet impact structure
- 2018
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Ingår i: Meteoritics & Planetary Science. - : Wiley. - 1086-9379 .- 1945-5100. ; 53:7, s. 1456-1475
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Tidskriftsartikel (refereegranskat)abstract
- Malingen is the 0.7km wide minor crater associated to the 10 times larger Lockne crater in the unique Lockne-Malingen doublet. The craters formed at 458Ma by the impact of a binary asteroid related to the well-known 470Ma Main Belt breakup event responsible for a large number of Ordovician craters and fossil meteorites. The binary asteroid struck a target sequence including similar to 500m of sea water, similar to 80m of limestone, similar to 30m of dark mud, and a peneplainized Precambrian crystalline basement. Although the Lockne crater has been extensively studied by core drillings and geophysics, little is known about the subsurface morphology of Malingen. We performed magnetic susceptibility and remanence, as well as density, measurements combined with gravity, and magnetic field surveys over the crater and its close vicinity as a base for forward magnetic and gravity modeling. The interior of the crater shows a general magnetic low of 90-100nT broken by a clustered set of high-amplitude, short wavelength anomalies caused by bodies of mafic rock in the target below the crater and as allogenic blocks in the crater infill. The gravity shows a general -1.4mgal anomaly over the crater caused by low-density breccia infill and fractured crystalline rocks below the crater floor. The modeling also revealed a slightly asymmetrical shape of the crater that together with the irregular ejecta distribution supports an oblique impact from the east, which is consistent with the direction of impact suggested for the Lockne crater.
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| 26. |
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| 27. |
- Melero-Fernandez de Mera, R. M., et al.
(författare)
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Effects of mutations in the post-translational modification sites on the trafficking of hyaluronan synthase 2 (HAS2)
- 2019
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Ingår i: Matrix Biology. - : Elsevier BV. - 0945-053X .- 1569-1802. ; 80, s. 85-103
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Tidskriftsartikel (refereegranskat)abstract
- Vesicular trafficking of hyaluronan synthases (HAS1-3) from endoplasmic reticulum (ER) through Golgi to plasma membrane (PM), and either back to endosomes and lysosomes, or out into extracellular vesicles, is important for their activities. We studied how post-translational modifications affect the trafficking of HAS2 by mutagenesis of the sites of ubiquitination (K190R), phosphorylation (T110A) and 0-GIcNAcylation (S221A), using Dendra2- and EGFP-HAS2 transfected into COS1 cells. Confocal microscopy showed HAS2 wild type (wt) and its K19OR and S221A mutants in ER, Golgi and extracellular vesicles, while the T110A mutant remained mostly in the ER. HA synthesis was reduced by S221A, while completely blocked by K19OR and T110A. Cell-surface biotinylation indicated that T110A was absent from PM, while S221A was close to the level of wt, and K190R was increased in PM. TIRF microscopy analysis gave similar results. Rabl 0 silencing increased HA secretion by HAS2, likely by inhibiting endocytosis of the enzyme from PM, as reported before for HAS3. Green-to-red photo-conversion of Dendra2-HAS2 constructs suggested slower decay of K190R and S221A than HAS2 wt, while T110A was barely degraded at all. S221D and S221E, the phosphomimetic mutants of this site, decayed faster and blocked hyaluronan synthesis, suggesting alternative 0-GIcNAci-PO4 substitution to regulate the stability of the enzyme. Probing the role of dynamic 0-GIcNAcylation at S221 by adding glucosamine increased the half-life of only HAS2 wt. The Dendra2 " HAS2 disappearance from Golgi was slower for K190R. Of the two inactive constructs, K190R co-transfected with HAS2 wt suppressed, whereas T110A had no effect on HA synthesis. Interestingly, the HAS2stimulated shedding of extracellular vesicles was dependent on HAS residence in PM but independent of HA synthesis. The results indicate that post-translational modifications control the trafficking of HAS2, and that trafficking is an integral part of the post-translational regulation of HAS2 activity.
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| 30. |
- Ormo, J., et al.
(författare)
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The geology of the Malingen structure: A probable doublet to the Lockne marine-target impact crater, central Sweden
- 2014
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Ingår i: Meteoritics & Planetary Science. - : Wiley. - 1086-9379. ; 49:3, s. 313-327
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Tidskriftsartikel (refereegranskat)abstract
- The Malingen structure is an approximately 700m wide, rimmed, sediment-filled, circular depression in Precambrian crystalline basement approximately 16.2km from the concentric, marine-target Lockne crater (inner, basement crater diameter approximately 7.5km, total diameter in sedimentary strata approximately 13.5km). We present here results from geologic mapping, a 148.8m deep core drilling from the center of the structure, detailed biostratigraphic dating of the structure's formation and its age correlation with Lockne, chemostratigraphy of the sedimentary infill, and indication for shock metamorphism in quartz from breccias below the crater infill. The drill core reveals, from bottom to the top, approximately 33m of basement rocks with increased fracturing upward, approximately 10m of polymict crystalline breccia with shock features, approximately 97m of slumped Cambrian mudstone, approximately 4.7m of a normally graded, polymict sedimentary breccia that in its uppermost part grades into sandstone and siltstone (cf. resurge deposits), and approximately 1.6m of secular sediments. The combined data set shows that the Malingen structure formed in conjunction with the Lockne crater in the same marine setting. The shape and depth of the basement crater and the cored sequence of crystalline breccias with shocked quartz, slumped sediments, and resurge deposits support an impact origin. The stratigraphic and geographic relationship with Lockne suggests the Lockne and Malingen craters to be the first described doublet impact structure by a binary asteroid into a marine-target setting.
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| 31. |
- Ruiz, Jesus Alvarez, et al.
(författare)
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VUV photon induced fluorescence study of SF5CF3
- 2006
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Ingår i: Physical Chemistry, Chemical Physics - PCCP. - : Royal Society of Chemistry (RSC). - 1463-9076 .- 1463-9084. ; 8:44, s. 5199-5206
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Tidskriftsartikel (refereegranskat)abstract
- The interaction of SF5CF3 with vacuum-UV radiation has been investigated by photon induced fluorescence spectroscopy. Total fluorescence yield and dispersed fluorescence spectra of SF5CF3 were recorded in the 200-1000 nm fluorescence window. In all cases, the fluorescence spectra resemble those of CF3X (X H, F, Cl, and Br) molecules. At photon energies below 20 eV, the emission is attributed to the excited CF3 and CF2 fragments. The threshold for the CF3 emission is 10.2 +/- 0.2 eV, giving an upper limit estimate for the SF5-CF3 bond dissociation energy of 3.9 +/- 0.3 eV. The excitation functions of the CF3 and CF2 emissions were measured in the photon energy range 13.6-27.0 eV. The resonant structures observed in SF5CF3 are attributed to electronic transitions from valence to Rydberg orbitals, following similar assignments in CF3X molecules. The photoabsorption spectrum of SF5CF3 shows features at the same energies, indicating a strong contribution from Rydberg excitations.
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| 32. |
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| 33. |
- Stankiewicz, Marek, et al.
(författare)
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Experimental station for gas phase fluorescence spectroscopy
- 2004
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Ingår i: Review of Scientific Instruments. - : AIP Publishing. - 0034-6748 .- 1089-7623. ; 75:7, s. 2402-2408
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Tidskriftsartikel (refereegranskat)abstract
- The details of an experimental setup for gas phase atomic and molecular fluorescence measurements using synchrotron radiation are described in this article. The most significant part of the apparatus is an optical arrangement, which allows for simultaneous measurements of dispersed as well as total fluorescence intensity using an effusive gas jet and an inbuilt gas cell assembled in a convenient plug and measure configuration. The first measurements concerning fluorescence of the N-2 molecule around the N 1s edge obtained with this setup are presented.
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| 34. |
- Stankiewicz, M., et al.
(författare)
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Relaxation dynamics of SF6 studied by energy-resolved electron ion coincidence technique
- 2004
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Ingår i: Journal of Electron Spectroscopy and Related Phenomena. - : Elsevier BV. - 0368-2048 .- 1873-2526. ; 137-40, s. 369-375
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Tidskriftsartikel (refereegranskat)abstract
- The mass spectra from the SF6 molecule acquired by energy-resolved electron ion coincidence (EREICO) technique using (1t(1g) + [5t(1u),1t(2u)]), (3e(g) + 1t(2g)), 4t(1u), and 5a(1g) electrons after both valence and S 2p(-1) 6a(1g) core excitation reveal a strong selectivity in the dissociation from these states. From the comparison of the obtained spectra, the influence of the core-excited state in the relaxation pathway of the molecule is studied. The S 2p --> 6a(1g) core excitation does not affect the relaxation dynamics after participator Auger decay to the (1t(1g) + [5t(1u),1t(2u)])(-1) and (4t(1u))(-l) states, but it alters the relaxation dynamics after participator Auger decay to the (3e(g) + 1t(2g))(-1) and (5a(1g))(-1) states with respect to the decay processes after direct excitation of the same orbitals. These observations point to core excitation induced dissociation in the SF6 molecule.
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| 35. |
- Ukleja, Marta, et al.
(författare)
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Flotillin-mediated stabilization of unfolded proteins in bacterial membrane microdomains
- 2024
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Ingår i: Nature Communications. - : Springer Nature. - 2041-1723. ; 15:1
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Tidskriftsartikel (refereegranskat)abstract
- The function of many bacterial processes depends on the formation of functional membrane microdomains (FMMs), which resemble the lipid rafts of eukaryotic cells. However, the mechanism and the biological function of these membrane microdomains remain unclear. Here, we show that FMMs in the pathogen methicillin-resistant Staphylococcus aureus (MRSA) are dedicated to confining and stabilizing proteins unfolded due to cellular stress. The FMM scaffold protein flotillin forms a clamp-shaped oligomer that holds unfolded proteins, stabilizing them and favoring their correct folding. This process does not impose a direct energy cost on the cell and is crucial to survival of ATP-depleted bacteria, and thus to pathogenesis. Consequently, FMM disassembling causes the accumulation of unfolded proteins, which compromise MRSA viability during infection and cause penicillin re-sensitization due to PBP2a unfolding. Thus, our results indicate that FMMs mediate ATP-independent stabilization of unfolded proteins, which is essential for bacterial viability during infection.
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