| 1. |
- Niemi, MEK, et al.
(författare)
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- 2021
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swepub:Mat__t
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| 2. |
- Kanai, M, et al.
(författare)
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- 2023
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swepub:Mat__t
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| 3. |
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- 2017
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Ingår i: Physical Review D. - 2470-0010 .- 2470-0029. ; 96:2
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Tidskriftsartikel (refereegranskat)
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| 4. |
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| 5. |
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| 6. |
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| 7. |
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| 8. |
- Abe, O, et al.
(författare)
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Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: an overview of the randomised trials
- 2005
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Ingår i: The Lancet. - 1474-547X. ; 365:9472, s. 1687-1717
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Tidskriftsartikel (refereegranskat)abstract
- Background Quinquennial overviews (1985-2000) of the randomised trials in early breast cancer have assessed the 5-year and 10-year effects of various systemic adjuvant therapies on breast cancer recurrence and survival. Here, we report the 10-year and 15-year effects. Methods Collaborative meta-analyses were undertaken of 194 unconfounded randomised trials of adjuvant chemotherapy or hormonal therapy that began by 1995. Many trials involved CMF (cyclophosphamide, methotrexate, fluorouracil), anthracycline-based combinations such as FAC (fluorouracil, doxombicin, cyclophosphamide) or FEC (fluorouracil, epirubicin, cyclophosphamide), tamoxifen, or ovarian suppression: none involved taxanes, trastuzumab, raloxifene, or modem aromatase inhibitors. Findings Allocation to about 6 months of anthracycline-based polychemotherapy (eg, with FAC or FEC) reduces the annual breast cancer death rate by about 38% (SE 5) for women younger than 50 years of age when diagnosed and by about 20% (SE 4) for those of age 50-69 years when diagnosed, largely irrespective of the use of tamoxifen and of oestrogen receptor (ER) status, nodal status, or other tumour characteristics. Such regimens are significantly (2p=0 . 0001 for recurrence, 2p<0 . 00001 for breast cancer mortality) more effective than CMF chemotherapy. Few women of age 70 years or older entered these chemotherapy trials. For ER-positive disease only, allocation to about 5 years of adjuvant tamoxifen reduces the annual breast cancer death rate by 31% (SE 3), largely irrespective of the use of chemotherapy and of age (<50, 50-69, &GE; 70 years), progesterone receptor status, or other tumour characteristics. 5 years is significantly (2p<0 . 00001 for recurrence, 2p=0 . 01 for breast cancer mortality) more effective than just 1-2 years of tamoxifen. For ER-positive tumours, the annual breast cancer mortality rates are similar during years 0-4 and 5-14, as are the proportional reductions in them by 5 years of tamoxifen, so the cumulative reduction in mortality is more than twice as big at 15 years as at 5 years after diagnosis. These results combine six meta-analyses: anthracycline-based versus no chemotherapy (8000 women); CMF-based versus no chemotherapy (14 000); anthracycline-based versus CMF-based chemotherapy (14 000); about 5 years of tamoxifen versus none (15 000); about 1-2 years of tamoxifen versus none (33 000); and about 5 years versus 1-2 years of tamoxifen (18 000). Finally, allocation to ovarian ablation or suppression (8000 women) also significantly reduces breast cancer mortality, but appears to do so only in the absence of other systemic treatments. For middle-aged women with ER-positive disease (the commonest type of breast cancer), the breast cancer mortality rate throughout the next 15 years would be approximately halved by 6 months of anthracycline-based chemotherapy (with a combination such as FAC or FEC) followed by 5 years of adjuvant tamoxifen. For, if mortality reductions of 38% (age <50 years) and 20% (age 50-69 years) from such chemotherapy were followed by a further reduction of 31% from tamoxifen in the risks that remain, the final mortality reductions would be 57% and 45%, respectively (and, the trial results could well have been somewhat stronger if there had been full compliance with the allocated treatments). Overall survival would be comparably improved, since these treatments have relatively small effects on mortality from the aggregate of all other causes. Interpretation Some of the widely practicable adjuvant drug treatments that were being tested in the 1980s, which substantially reduced 5-year recurrence rates (but had somewhat less effect on 5-year mortality rates), also substantially reduce 15-year mortality rates. Further improvements in long-term survival could well be available from newer drugs, or better use of older drugs.
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| 9. |
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- 2019
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Tidskriftsartikel (refereegranskat)
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| 10. |
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| 11. |
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| 12. |
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| 13. |
- Lawrenson, Kate, et al.
(författare)
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Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus
- 2016
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- A locus at 19p13 is associated with breast cancer (BC) and ovarian cancer (OC) risk. Here we analyse 438 SNPs in this region in 46,451 BC and 15,438 OC cases, 15,252 BRCA1 mutation carriers and 73,444 controls and identify 13 candidate causal SNPs associated with serous OC (P=9.2 × 10-20), ER-negative BC (P=1.1 × 10-13), BRCA1-associated BC (P=7.7 × 10-16) and triple negative BC (P-diff=2 × 10-5). Genotype-gene expression associations are identified for candidate target genes ANKLE1 (P=2 × 10-3) and ABHD8 (P<2 × 10-3). Chromosome conformation capture identifies interactions between four candidate SNPs and ABHD8, and luciferase assays indicate six risk alleles increased transactivation of the ADHD8 promoter. Targeted deletion of a region containing risk SNP rs56069439 in a putative enhancer induces ANKLE1 downregulation; and mRNA stability assays indicate functional effects for an ANKLE1 3′-UTR SNP. Altogether, these data suggest that multiple SNPs at 19p13 regulate ABHD8 and perhaps ANKLE1 expression, and indicate common mechanisms underlying breast and ovarian cancer risk.
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| 14. |
- Richards, Stephen, et al.
(författare)
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Genome Sequence of the Pea Aphid Acyrthosiphon pisum
- 2010
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Ingår i: PLoS biology. - : Public Library of Science (PLoS). - 1544-9173 .- 1545-7885. ; 8:2, s. e1000313-
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Tidskriftsartikel (refereegranskat)abstract
- Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity. Here we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first published whole genome sequence of a basal hemimetabolous insect provides an outgroup to the multiple published genomes of holometabolous insects. Pea aphids are host-plant specialists, they can reproduce both sexually and asexually, and they have coevolved with an obligate bacterial symbiont. Here we highlight findings from whole genome analysis that may be related to these unusual biological features. These findings include discovery of extensive gene duplication in more than 2000 gene families as well as loss of evolutionarily conserved genes. Gene family expansions relative to other published genomes include genes involved in chromatin modification, miRNA synthesis, and sugar transport. Gene losses include genes central to the IMD immune pathway, selenoprotein utilization, purine salvage, and the entire urea cycle. The pea aphid genome reveals that only a limited number of genes have been acquired from bacteria; thus the reduced gene count of Buchnera does not reflect gene transfer to the host genome. The inventory of metabolic genes in the pea aphid genome suggests that there is extensive metabolite exchange between the aphid and Buchnera, including sharing of amino acid biosynthesis between the aphid and Buchnera. The pea aphid genome provides a foundation for post-genomic studies of fundamental biological questions and applied agricultural problems.
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| 15. |
- Patterson, Nick, et al.
(författare)
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Large-scale migration into Britain during the Middle to Late Bronze Age
- 2022
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Ingår i: Nature. - : Nature Publishing Group. - 0028-0836 .- 1476-4687. ; , s. 588-594
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Tidskriftsartikel (refereegranskat)abstract
- Present-day people from England and Wales harbour more ancestry derived from Early European Farmers (EEF) than people of the Early Bronze Age1. To understand this, we generated genome-wide data from 793 individuals, increasing data from the Middle to Late Bronze and Iron Age in Britain by 12-fold, and Western and Central Europe by 3.5-fold. Between 1000 and 875 BC, EEF ancestry increased in southern Britain (England and Wales) but not northern Britain (Scotland) due to incorporation of migrants who arrived at this time and over previous centuries, and who were genetically most similar to ancient individuals from France. These migrants contributed about half the ancestry of Iron Age people of England and Wales, thereby creating a plausible vector for the spread of early Celtic languages into Britain. These patterns are part of a broader trend of EEF ancestry becoming more similar across central and western Europe in the Middle to Late Bronze Age, coincident with archaeological evidence of intensified cultural exchange2-6. There was comparatively less gene flow from continental Europe during the Iron Age, and Britain's independent genetic trajectory is also reflected in the rise of the allele conferring lactase persistence to ~50% by this time compared to ~7% in central Europe where it rose rapidly in frequency only a millennium later. This suggests that dairy products were used in qualitatively different ways in Britain and in central Europe over this period.
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| 16. |
- Brownstein, Catherine A., et al.
(författare)
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An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
- 2014
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Ingår i: Genome Biology. - : Springer Science and Business Media LLC. - 1465-6906 .- 1474-760X. ; 15:3, s. R53-
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Tidskriftsartikel (refereegranskat)abstract
- Background: There is tremendous potential for genome sequencing to improve clinical diagnosis and care once it becomes routinely accessible, but this will require formalizing research methods into clinical best practices in the areas of sequence data generation, analysis, interpretation and reporting. The CLARITY Challenge was designed to spur convergence in methods for diagnosing genetic disease starting from clinical case history and genome sequencing data. DNA samples were obtained from three families with heritable genetic disorders and genomic sequence data were donated by sequencing platform vendors. The challenge was to analyze and interpret these data with the goals of identifying disease-causing variants and reporting the findings in a clinically useful format. Participating contestant groups were solicited broadly, and an independent panel of judges evaluated their performance. Results: A total of 30 international groups were engaged. The entries reveal a general convergence of practices on most elements of the analysis and interpretation process. However, even given this commonality of approach, only two groups identified the consensus candidate variants in all disease cases, demonstrating a need for consistent fine-tuning of the generally accepted methods. There was greater diversity of the final clinical report content and in the patient consenting process, demonstrating that these areas require additional exploration and standardization. Conclusions: The CLARITY Challenge provides a comprehensive assessment of current practices for using genome sequencing to diagnose and report genetic diseases. There is remarkable convergence in bioinformatic techniques, but medical interpretation and reporting are areas that require further development by many groups.
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| 17. |
- Muhlemann, B., et al.
(författare)
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Ancient hepatitis B viruses from the Bronze Age to the Medieval period
- 2018
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 557:7705, s. 418-423
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Tidskriftsartikel (refereegranskat)abstract
- Hepatitis B virus (HBV) is a major cause of human hepatitis. There is considerable uncertainty about the timescale of its evolution and its association with humans. Here we present 12 full or partial ancient HBV genomes that are between approximately 0.8 and 4.5 thousand years old. The ancient sequences group either within or in a sister relationship with extant human or other ape HBV clades. Generally, the genome properties follow those of modern HBV. The root of the HBV tree is projected to between 8.6 and 20.9 thousand years ago, and we estimate a substitution rate of 8.04 x 10(-6-)1.51 x 10(-5) nucleotide substitutions per site per year. In several cases, the geographical locations of the ancient genotypes do not match present-day distributions. Genotypes that today are typical of Africa and Asia, and a subgenotype from India, are shown to have an early Eurasian presence. The geographical and temporal patterns that we observe in ancient and modern HBV genotypes are compatible with well-documented human migrations during the Bronze and Iron Ages(1,2). We provide evidence for the creation of HBV genotype A via recombination, and for a long-term association of modern HBV genotypes with humans, including the discovery of a human genotype that is now extinct. These data expose a complexity of HBV evolution that is not evident when considering modern sequences alone.
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| 18. |
- Price, T. Douglas, et al.
(författare)
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Human remains, context, and place of origin for the Salme, Estonia, boat burials
- 2020
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Ingår i: Journal of Anthropological Archaeology. - : ACADEMIC PRESS INC ELSEVIER SCIENCE. - 0278-4165 .- 1090-2686. ; 58
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Tidskriftsartikel (refereegranskat)abstract
- Isotopic proveniencing of all individuals from the ship and boat burials at Salme, Estonia, is the subject of this study of the interred human remains from around AD 750, at the beginning of the Viking period. The isotopic results indicate that the majority of these individuals came from a region with higher strontium isotopic ratios than those found in Estonia. There were five individuals, buried in Salme II-the ship burial with 34 individuals-who exhibited lower strontium isotope ratios that might have come from the Swedish island of Gotland or several other possible places. The combination of isotopic signals and archaeological information suggests that the majority of buried individuals (those with higher strontium isotope ratios) came from the Malaren Valley in east-central Sweden.
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| 19. |
- Thorell, Kaisa, 1983, et al.
(författare)
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The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes
- 2023
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Ingår i: Nature Communications. - 2041-1723. ; 14:1
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Tidskriftsartikel (refereegranskat)abstract
- Helicobacter pylori, a dominant member of the gastric microbiota, shares co-evolutionary history with humans. This has led to the development of genetically distinct H. pylori subpopulations associated with the geographic origin of the host and with differential gastric disease risk. Here, we provide insights into H. pylori population structure as a part of the Helicobacter pylori Genome Project (HpGP), a multi-disciplinary initiative aimed at elucidating H. pylori pathogenesis and identifying new therapeutic targets. We collected 1011 well-characterized clinical strains from 50 countries and generated high-quality genome sequences. We analysed core genome diversity and population structure of the HpGP dataset and 255 worldwide reference genomes to outline the ancestral contribution to Eurasian, African, and American populations. We found evidence of substantial contribution of population hpNorthAsia and subpopulation hspUral in Northern European H. pylori. The genomes of H. pylori isolated from northern and southern Indigenous Americans differed in that bacteria isolated in northern Indigenous communities were more similar to North Asian H. pylori while the southern had higher relatedness to hpEastAsia. Notably, we also found a highly clonal yet geographically dispersed North American subpopulation, which is negative for the cag pathogenicity island, and present in 7% of sequenced US genomes. We expect the HpGP dataset and the corresponding strains to become a major asset for H. pylori genomics.
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| 20. |
- Ahlström, Torbjörn, et al.
(författare)
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Mobile or stationary? An analysis of strontium and carbon isotopes from Västerbjers, Gotland, Sweden
- 2021
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Ingår i: Journal of Archaeological Science: Reports. - : Elsevier BV. - 2352-409X. ; 36
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Tidskriftsartikel (refereegranskat)abstract
- The nature of the Neolithic Pitted Ware Culture (PWC) has been debated in Scandinavian archaeology since the beginning of the 20th century. This material culture post-dates the inception of an agro-pastoral Neolithic economy in the region (TRB) but demonstrate a semi-foraging lifeway. The PWC is considered elusive in the sense that the economy has been interpreted as either based on maritime foraging (isotope analysis), or a mixed-Neolithic economy based on boar (Sus scrofa) (archaeozoology). The mobility of the PWC group on Gotland has not been studied previously. We provide an analysis of strontium data from the site Västerbjers, Gotland, and engage in the question whether this population was mobile (foragers) or stationary (mixed-Neolithic). We also discuss the strontium baseline of the island in the light of new data. The results presented demonstrate a group that was confined to the island and with no strontium data suggesting a supra-regional mobility. We cannot discriminate between a regional mobility pattern on Gotland (mobility between sites) and a local, stationary group (fully sedentary), but we present data that suggest the former. Thus, our conclusion is that the PWC group on Gotland was stationary, the sedentism disclosed being supported by a mixed-Neolithic economy based on boar (Sus scrofa). In fact, the PWC group is depicting less variance with respect to 87Sr/86Sr ratios than the TRB and Late Neolithic groups on the island, being more stationary than the agricultural groups.
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| 21. |
- Allentoft, Morten E., et al.
(författare)
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100 ancient genomes show repeated population turnovers in Neolithic Denmark
- 2024
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Ingår i: Nature. - 0028-0836 .- 1476-4687. ; 625, s. 329-337
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Tidskriftsartikel (refereegranskat)abstract
- Major migration events in Holocene Eurasia have been characterized genetically at broad regional scales1–4. However, insights into the population dynamics in the contact zones are hampered by a lack of ancient genomic data sampled at high spatiotemporal resolution5–7. Here, to address this, we analysed shotgun-sequenced genomes from 100 skeletons spanning 7,300 years of the Mesolithic period, Neolithic period and Early Bronze Age in Denmark and integrated these with proxies for diet (13C and 15N content), mobility (87Sr/86Sr ratio) and vegetation cover (pollen). We observe that Danish Mesolithic individuals of the Maglemose, Kongemose and Ertebølle cultures form a distinct genetic cluster related to other Western European hunter-gatherers. Despite shifts in material culture they displayed genetic homogeneity from around 10,500 to 5,900 calibrated years before present, when Neolithic farmers with Anatolian-derived ancestry arrived. Although the Neolithic transition was delayed by more than a millennium relative to Central Europe, it was very abrupt and resulted in a population turnover with limited genetic contribution from local hunter-gatherers. The succeeding Neolithic population, associated with the Funnel Beaker culture, persisted for only about 1,000 years before immigrants with eastern Steppe-derived ancestry arrived. This second and equally rapid population replacement gave rise to the Single Grave culture with an ancestry profile more similar to present-day Danes. In our multiproxy dataset, these major demographic events are manifested as parallel shifts in genotype, phenotype, diet and land use.
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| 22. |
- Allentoft, Morten E., et al.
(författare)
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Population genomics of post-glacial western Eurasia
- 2024
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Ingår i: Nature. - 0028-0836 .- 1476-4687. ; 625:7994, s. 301-311
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Tidskriftsartikel (refereegranskat)abstract
- Western Eurasia witnessed several large-scale human migrations during the Holocene1–5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes—mainly from the Mesolithic and Neolithic periods—from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a ‘great divide’ genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 bp, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 bp, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a ‘Neolithic steppe’ cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
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| 23. |
- Bergerbrant, Sophie, 1968, et al.
(författare)
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Identifying commoners in the Bronze Age: burials outside barrows
- 2017
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Ingår i: New Perspectives on the Bronze Age: Proceedings from the 13th Nordic Bronze Age Symposium, held in Gothenburg 9th June to 13th June 2015. - Oxford : Archaeopress. - 9781784915988 ; , s. 37-64
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- This article discusses the possibility of social division and the presence of commoners in south Scandinavia during the Early Bronze Age. The discussion is based on new scientific and archaeological data generated in the project Travels, transmissions and transformations in temperate northern Europe during the 3rd and 2nd millennium BC: The rise of Bronze Age societies. Based on a comprehensive radiocarbon dating program, we were able to re-assign many skeletons, previously assumed to be Late Neolithic, to the Bronze Age. This accounted for a significant proportion of non-elite burials (including those of children) that had previously been ‘mysteriously’ missing in the archaeological Bronze Age record. Moreover, strontium isotope analyses reveal that individuals seem to be mobile regardless of their wealth status and burial rituals. It suggests a society where workers and perhaps even nonfree labourers were mobile, not only the elite segment.
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| 24. |
- Bäckström, Ylva, et al.
(författare)
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Social Identity and Mobility at a Pre-industrial Mining Complex, Sweden
- 2016
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Ingår i: Journal of Archaeological Science. - : Elsevier BV. - 1095-9238 .- 0305-4403. ; 66, s. 154-168
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Tidskriftsartikel (refereegranskat)abstract
- The early modern period has so far received little attention from archaeologists and anthropologists in Sweden. This study explores demographic patterns, social differences, family structure and mobility in a 16th-century skeletal population (n=102) from a preindustrial mining community (Salberget) in Bergslagen, Sweden, using a bioarchaeological perspective. Methodologically, the results of strontium and oxygen isotope analysis in tooth enamel (n=38) were added to archaeological, anthropological and documentary evidence to detect demographic and/or social differences in mobility. Historical documents provided some indications of the kinds of people working at the mine. Archaeological evidence indicated two distinct grave types and the anthropological analysis documented differences in the age and sex of these individuals. The analysis of strontium, oxygen and carbon isotopes in teeth was used to infer possible place of origin information about these individuals. Various lines of evidence suggest that the cemetery held a mix of family groups, foreign workers and prisoners of war, all associated with the Sala silver mine. Together, the archaeology, osteology and isotope chemistry confirmed the documentary evidence of internal and external migration in the region. Furthermore, this study displays signs of matrilocality and a socially stratified society.
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| 25. |
- Egfjord, Anne Friis Holm, et al.
(författare)
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Genomic Steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark
- 2021
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Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 16
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Tidskriftsartikel (refereegranskat)abstract
- The Gjerrild burial provides the largest and best-preserved assemblage of human skeletal material presently known from the Single Grave Culture (SGC) in Denmark. For generations it has been debated among archaeologists if the appearance of this archaeological complex represents a continuation of the previous Neolithic communities, or was facilitated by incoming migrants. We sampled and analysed five skeletons from the Gjerrild cist, buried over a period of c. 300 years, 2600/2500–2200 cal BCE. Despite poor DNA preservation, we managed to sequence the genome (>1X) of one individual and the partial genomes (0.007X and 0.02X) of another two individuals. Our genetic data document a female (Gjerrild 1) and two males (Gjerrild 5 + 8), harbouring typical Neolithic K2a and HV0 mtDNA haplogroups, but also a rare basal variant of the R1b1 Y-chromosomal haplogroup. Genome-wide analyses demonstrate that these people had a significant Yamnaya-derived (i.e. steppe) ancestry component and a close genetic resemblance to the Corded Ware (and related) groups that were present in large parts of Northern and Central Europe at the time. Assuming that the Gjerrild skeletons are genetically representative of the population of the SGC in broader terms, the transition from the local Neolithic Funnel Beaker Culture (TRB) to SGC is not characterized by demographic continuity. Rather, the emergence of SGC in Denmark was part of the Late Neolithic and Early Bronze Age population expansion that swept across the European continent in the 3rd millennium BCE, resulting in various degrees of genetic replacement and admixture processes with previous Neolithic populations.
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| 26. |
- Fischer, Anders, 1951, et al.
(författare)
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Vittrup Man-The life-history of a genetic foreigner in Neolithic Denmark.
- 2024
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Ingår i: PloS one. - 1932-6203. ; 19:2
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Tidskriftsartikel (refereegranskat)abstract
- The lethally maltreated body of Vittrup Man was deposited in a Danish bog, probably as part of a ritualised sacrifice. It happened between c. 3300 and 3100 cal years BC, i.e., during the period of the local farming-based Funnel Beaker Culture. In terms of skull morphological features, he differs from the majority of the contemporaneous farmers found in Denmark, and associates with hunter-gatherers, who inhabited Scandinavia during the previous millennia. His skeletal remains were selected for transdisciplinary analysis to reveal his life-history in terms of a population historical perspective. We report the combined results of an integrated set of genetic, isotopic, physical anthropological and archaeological analytical approaches. Strontium signature suggests a foreign birthplace that could be in Norway or Sweden. In addition, enamel oxygen isotope values indicate that as a child he lived in a colder climate, i.e., to the north of the regions inhabited by farmers. Genomic data in fact demonstrates that he is closely related to Mesolithic humans known from Norway and Sweden. Moreover, dietary stable isotope analyses on enamel and bone collagen demonstrate a fisher-hunter way of life in his childhood and a diet typical of farmers later on. Such a variable life-history is also reflected by proteomic analysis of hardened organic deposits on his teeth, indicating the consumption of forager food (seal, whale and marine fish) as well as farmer food (sheep/goat). From a dietary isotopic transect of one of his teeth it is shown that his transfer between societies of foragers and farmers took place near to the end of his teenage years.
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| 27. |
- Frei, Karin M, et al.
(författare)
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Mapping human mobility during the third and second millennia BC in present-day Denmark
- 2019
-
Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 14:8
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Tidskriftsartikel (refereegranskat)abstract
- We present results of the largest multidisciplinary human mobility investigation to date of skeletal remains from present-day Denmark encompassing the 3rd and 2nd millennia BC. Through a multi-analytical approach based on 88 individuals from 37 different archaeological localities in which we combine strontium isotope and radiocarbon analyses together with anthropological investigations, we explore whether there are significant changes in human mobility patterns during this period. Overall, our data suggest that mobility of people seems to have been continuous throughout the 3rd and 2nd millennia BC. However, our data also indicate a clear shift in mobility patterns from around 1600 BC onwards, with a larger variation in the geographical origin of the migrants, and potentially including more distant regions. This shift occurred during a transition period at the beginning of the Nordic Bronze Age at a time when society flourished, expanded and experienced an unprecedented economic growth, suggesting that these aspects were closely related.
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| 28. |
- Gustin, Ingrid, et al.
(författare)
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Isotopes and Human Burials at Viking Age Birka and the Mälaren Region, East Central Sweden
- 2017
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Ingår i: Journal of Anthropological Archaeology. - : Elsevier BV. - 0278-4165. ; 49 (2018), s. 19-38
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Tidskriftsartikel (refereegranskat)abstract
- Isotopic proveniencing has been applied to human inhumations and cremations as well as fauna from the Viking Age site of Birka and the surrounding Mälaren region, located in east-central Sweden. Human enamel frominhumations has been measured for strontium, oxygen, and carbon isotope ratios (petrous bone from cremations was measured for strontium only) to obtain information on mobility and diet. Seven graves from the larger Mälaren region and several at Birka had distinctive grave goods thought to have originated in Finland. The isotopic values from these graves indicate that they may have been local individuals. The faunal remains from the Mälaren region corresponded closely with samples from Birka providing a baseline for strontium isotopic ratios in this area. At the site of Birka, two distinct groups of burials can be identified among the measured values, along with several outliers. The data suggest that Birka was a multi-ethnic settlement in the Viking period, consistent with historical sources and concomitant with its role as an important center of economy and trade on the east coast of Sweden.
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| 29. |
- Kjällquist, Mathilda, et al.
(författare)
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Mesolithic mobility and social contact networks in south Scandinavia around 7000 BCE : Lithic raw materials and isotopic proveniencing of human remains from Norje Sunnansund, Sweden
- 2019
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Ingår i: Journal of Anthropological Archaeology. - : Elsevier BV. - 0278-4165 .- 1090-2686. ; 53, s. 186-201
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Tidskriftsartikel (refereegranskat)abstract
- Recent research provides new perspectives on large-scale Early Holocene human interaction within Eurasia, based on ancient DNA or lithic technology. But the extent of regional human mobility is not well known. In this study, we combined two different approaches to investigate regional mobility and social networks in southern Scandinavia. We analyzed strontium isotopes in human teeth and regional lithic raw material use and technology from a Mesolithic site, Norje Sunnansund in southern Sweden (7000 BCE). The lithic raw material composition at the site, and previous archaeological studies, indicated that the inhabitants mainly had utilized an area stretching 30 km southward. The isotopic analysis indicated that at least half of the analyzed individuals had a non-local origin, based on the local isotope signature, but that possibly only a few individuals originated outside the area defined by lithic acquisition. Those few isotopic values and the presence of lithic material as non-local flint and East Swedish microblade-cores in quartz, suggested that people also traveled far, but probably more sporadically. The combined analyzes revealed the complexity of late Boreal hunter-gatherers in South Scandinavia - although some groups appear to have had a limited geographical mobility, contact networks seem to have stretched over long distances.
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| 30. |
- Kristiansen, Kristian, 1948, et al.
(författare)
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Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe
- 2017
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Ingår i: Antiquity. - : Antiquity Publications. - 0003-598X .- 1745-1744. ; 91:356, s. 334-347
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Tidskriftsartikel (refereegranskat)abstract
- Copyright © 2017 Antiquity Publications Ltd.Recent genetic, isotopic and linguistic research has dramatically changed our understanding of how the Corded Ware Culture in Europe was formed. Here the authors explain it in terms of local adaptations and interactions between migrant Yamnaya people from the Pontic-Caspian steppe and indigenous North European Neolithic cultures. The original herding economy of the Yamnaya migrants gradually gave way to new practices of crop cultivation, which led to the adoption of new words for those crops. The result of this hybridisation process was the formation of a new material culture, the Corded Ware Culture, and of a new dialect, Proto-Germanic. Despite a degree of hostility between expanding Corded Ware groups and indigenous Neolithic groups, stable isotope data suggest that exogamy provided a mechanism facilitating their integration. This article should be read in conjunction with that by Heyd (2017, in this issue).
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| 31. |
- Larsson, Lars, et al.
(författare)
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Animal Teeth and Mesolithic Society
- 2022
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Ingår i: Open Archaeology. - : Walter de Gruyter GmbH. - 2300-6560. ; 8:1, s. 55-61
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Tidskriftsartikel (refereegranskat)abstract
- In several graves from the Mesolithic sites of Skateholm, South Sweden, animal teeth were found. Some of these teeth were used as beads in clothing. The strontium isotope analysis of 11 animal teeth is reported and discussed in comparison with human values from burials at the sites and baseline values from South Sweden. Roughly half of the animal teeth are nonlocal and from different places of origin. The beads themselves appear to carry symbolic information that may be related to the physical or social attributes of the wearer. This study involved a detailed investigation of the use-wear around the perforation and its relation to the local and nonlocal origin of the teeth.
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| 32. |
- Lillie, Malcolm, 1963-, et al.
(författare)
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First isotope analysis and new radiocarbon dating of Trypillia (Tripolye) farmers from Verteba Cave, Biche Zolote, Ukraine
- 2017
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Ingår i: Documenta Praehistorica. - : Ljubljana University Press. - 1408-967X .- 1854-2492. ; 44, s. 306-324
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Tidskriftsartikel (refereegranskat)abstract
- This paper presents an analysis of human and animal remains from Verteba cave,near Bilche Zolote, western Ukraine. This study was prompted by a paucity of direct dates on thismaterial and the need to contextualise these remains in relation both to the transition from hunt-ing and gathering to farming in Ukraine, and their specific place within the Cucuteni-Trypillia cul-ture sequence. The new absolute dating places the remains studied here in Trypillia stages BII/CIat c. 3900–3500 cal BC, with one individual now redated to the Early Scythian period. As such,these finds are even more exceptional than previously assumed, being some of the earliest dis-covered for this culture. The isotope analyses indicate that these individuals are local to the region,with the dietary stable isotopes indicating a C3terrestrial diet for the Trypillia-period humansanalysed. The Scythian period individual has δ13C ratios indicative of either c. 50% marine, or alter-natively C4plant inputs into the diet, despite δ18O and 87Sr/86Sr ratios that are comparable to the otherindividuals studied.
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| 33. |
- Mansoor, Rashid, et al.
(författare)
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Haematological consequences of acute uncomplicated falciparum malaria : a WorldWide Antimalarial Resistance Network pooled analysis of individual patient data
- 2022
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Ingår i: BMC Medicine. - : Springer Nature. - 1741-7015. ; 20:1
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundPlasmodium falciparum malaria is associated with anaemia-related morbidity, attributable to host, parasite and drug factors. We quantified the haematological response following treatment of uncomplicated P. falciparum malaria to identify the factors associated with malarial anaemia.MethodsIndividual patient data from eligible antimalarial efficacy studies of uncomplicated P. falciparum malaria, available through the WorldWide Antimalarial Resistance Network data repository prior to August 2015, were pooled using standardised methodology. The haematological response over time was quantified using a multivariable linear mixed effects model with nonlinear terms for time, and the model was then used to estimate the mean haemoglobin at day of nadir and day 7. Multivariable logistic regression quantified risk factors for moderately severe anaemia (haemoglobin < 7 g/dL) at day 0, day 3 and day 7 as well as a fractional fall >= 25% at day 3 and day 7.ResultsA total of 70,226 patients, recruited into 200 studies between 1991 and 2013, were included in the analysis: 50,859 (72.4%) enrolled in Africa, 18,451 (26.3%) in Asia and 916 (1.3%) in South America. The median haemoglobin concentration at presentation was 9.9 g/dL (range 5.0-19.7 g/dL) in Africa, 11.6 g/dL (range 5.0-20.0 g/dL) in Asia and 12.3 g/dL (range 6.9-17.9 g/dL) in South America. Moderately severe anaemia (Hb < 7g/dl) was present in 8.4% (4284/50,859) of patients from Africa, 3.3% (606/18,451) from Asia and 0.1% (1/916) from South America. The nadir haemoglobin occurred on day 2 post treatment with a mean fall from baseline of 0.57 g/dL in Africa and 1.13 g/dL in Asia. Independent risk factors for moderately severe anaemia on day 7, in both Africa and Asia, included moderately severe anaemia at baseline (adjusted odds ratio (AOR) = 16.10 and AOR = 23.00, respectively), young age (age < 1 compared to >= 12 years AOR = 12.81 and AOR = 6.79, respectively), high parasitaemia (AOR = 1.78 and AOR = 1.58, respectively) and delayed parasite clearance (AOR = 2.44 and AOR = 2.59, respectively). In Asia, patients treated with an artemisinin-based regimen were at significantly greater risk of moderately severe anaemia on day 7 compared to those treated with a non-artemisinin-based regimen (AOR = 2.06 [95%CI 1.39-3.05], p < 0.001).ConclusionsIn patients with uncomplicated P. falciparum malaria, the nadir haemoglobin occurs 2 days after starting treatment. Although artemisinin-based treatments increase the rate of parasite clearance, in Asia they are associated with a greater risk of anaemia during recovery.
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| 34. |
- Price, Douglas T., et al.
(författare)
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Isotopic investigation of human provenience at the eleventh century cemetery of Ndr. Grødbygård, Bornholm, Denmark
- 2013
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Ingår i: Danish Journal of Archaeology. - : Det Kgl. Bibliotek/Royal Danish Library. - 2166-2282 .- 2166-2290. ; 1:2, s. 93-112
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Tidskriftsartikel (refereegranskat)abstract
- Bornholm is a Danish island almost in the center of the southern Baltic Sea. The strategic location of the island, its rich archeology, and its complex geology make it an intriguing location for the isotopic study of past human mobility. The focus of this study is on the large cemetery of Ndr. Grødbygård in the southern part of the island, which dates to the eleventh century AD and contains 553 individuals in 516 graves. The majority of the burials were in a supine position oriented west– east, with the heads to the west, following the tradition of that time. In contrast to the Christian traditions, however, the graves at Grødbygård were richly equipped by Scandinavian standards and some of the burial practices more closely resembled those from the Western Slavic region of the south (present day northeastern Germany and Poland). We have used isotopic analyses to examine the external relations and potential places of origin of the inhabitants of the cemetery. Strontium and oxygen isotope ratios in human tooth enamel provide a signature of place of origin and can be compared to the ratios of the place of burial to determine local or non-local origins. In the case of Bornholm, the local geology is quite complex, with a variety of rocks of different age and composition, resulting in a wide range of strontium isotope sources on the island, complicating the issue of identifying migrants. At the same time, Grødbygård provides an important example of the application of such methods in less than ideal conditions.
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| 35. |
- Price, Douglas T., et al.
(författare)
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Origins of inhabitants from the 16th century Sala (Sweden) silver mine cemetery – A lead isotope perspective
- 2017
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Ingår i: Journal of Archaeological Science. - : Elsevier BV. - 0305-4403. ; 80, s. 1-13
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Tidskriftsartikel (refereegranskat)abstract
- Historical documents record the operation of a silver mine from the 16th century AD located near the former village of Salberget in central Sweden. The historical record describes several categories of inhabitants, including local families, workers and miners, foreign engineers and mining specialists, as well as war captives and criminals used as forced labor in the mines. A church yard in the vicinity of the village served as a burial ground. Archaeological evidence indicates two distinct grave types (coffin and earthen) and physical anthropology documents differences in age and sex between these grave types, as well as harsh conditions of life. Strontium and oxygen isotopes have been used previously to investigate the place of origin of the cemetery inhabitants and clear differences among the types of graves were seen in the isotope results. Place of origin was more difficult to ascertain however. Here we utilize lead isotopes as an additional isotopic tracer to identify origins. The lead isotope investigations pinpoint several areas outside of the Sala region where some of the inhabitants originated. In addition, the study documents the benefits of using lead isotopes in human proveniencing studies.
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| 36. |
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| 37. |
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| 38. |
- Price, T Douglas, et al.
(författare)
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Pitted ware culture: Isotopic evidence for contact between Sweden and Denmark across the Kattegat in the Middle Neolithic, ca. 3000 BC
- 2021
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Ingår i: Journal of Anthropological Archaeology. - : Elsevier BV. - 0278-4165 .- 1090-2686. ; 61
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Tidskriftsartikel (refereegranskat)abstract
- The Pitted Ware Culture emerged during the Neolithic around 3400 BCE in east-central Sweden and quickly spread south and west to various parts of southern Scandinavia. For the next millennium these groups exhibited less interest in agricultural activity and a general return to the hunting and gathering of wild animals and plants with a focus on seals in some coastal areas. Pitted Ware Culture arrived in northeastern Denmark after 3100 BCE. One of the most important sites of this period was at Kainsbakke, on the peninsula of Djursland. One deep pit at the site contained unusual numbers of bear, red deer, European elk, and boar remains. This study focuses on the isotopic proveniencing of some of these animal remains to evaluate their origins. Confirmation of the import of some of the animals, probably from western Sweden, suggests possible shared ritual activity at the central Kainsbakke site. This evidence also confirms the navigating skills of Neolithic peoples in northern Europe.
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| 39. |
- Robson, Harry K., et al.
(författare)
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Carbon and nitrogen stable isotope values in freshwater, brackish and marine fish bone collagen from Mesolithic and Neolithic sites in central and northern Europe
- 2016
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Ingår i: Environmental Archaeology. - 1461-4103. ; 21:2, s. 105-118
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Tidskriftsartikel (refereegranskat)abstract
- The aim of this research is to examine the isotopic characterisation of archaeological fish species as it relates to freshwater, brackish and marine environments, trophic level and migration patterns, and to determine intraspecies variation within and between fish populations in different locations within central and northern Europe. Carbon and nitrogen stable isotope analysis was undertaken on collagen extracted from 72 fish bone samples from eight Mesolithic and Neolithic archaeological sites in this region. Thirty-six (50%) of the specimens analysed produced results with acceptable carbon to nitrogen atomic ratios (2·9–3·6). The fish remains encompassed a wide spectrum of freshwater, brackish and marine taxa (n = 12), which were reflected in the δ13C values (−24·5 to −7·8‰). The freshwater/brackish fish (pike, Esox lucius; perch, Perca fluviatilis; zander, Sander lucioperca) had δ13C values that ranged from −24·2 to −19·3‰, whereas the brackish/marine fish (spurdog, Squalus acanthias; flatfish, Pleuronectidae; codfish, Gadidae; garfish, Belone belone; mackerel, Scomber scombrus) ranged from −14·9 to −9·4‰. Salmonidae, an anadromous taxon, and eel (Anguilla anguilla), a catadromous species, had carbon isotope values consistent with marine origin, and no evidence of freshwater residency (−12·7 to −11·7‰). The δ15N values had a range of 6·2‰ (6·5–12·7‰) indicating that these fish were on average feeding at 1·7 trophic levels higher than their producers in these diverse aquatic environments. These results serve as an important ecological baseline for the future isotopic reconstruction of the diet of human populations dating to the late Mesolithic and early Neolithic of the region.
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| 40. |
- Seersholm, Frederik Valeur, et al.
(författare)
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Repeated plague infections across six generations of Neolithic Farmers
- 2024
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Ingår i: Nature. - 0028-0836 .- 1476-4687.
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Tidskriftsartikel (refereegranskat)abstract
- In the period between 5,300 and 4,900 calibratedyears before present (cal. bp), populations across large parts of Europe underwent a period of demographic decline1,2. However, the cause of this so-called Neolithic decline is still debated. Some argue for an agricultural crisis resulting in the decline3, others for the spread of an early form of plague4. Here we use population-scale ancient genomics to infer ancestry, social structure and pathogen infection in 108 Scandinavian Neolithic individuals from eight megalithic graves and a stone cist. We find that the Neolithic plague was widespread, detected in at least 17% of the sampled population and across large geographical distances. We demonstrate that the disease spread within the Neolithic community in three distinct infection events within a period of around 120 years. Variant graph-based pan-genomics shows that the Neolithic plague genomes retained ancestral genomic variation present in Yersinia pseudotuberculosis, including virulence factors associated with disease outcomes. In addition, we reconstruct four multigeneration pedigrees, the largest of which consists of 38 individuals spanning six generations, showing a patrilineal social organization. Lastly, we document direct genomic evidence for Neolithic female exogamy in a woman buried in a different megalithic tomb than her brothers. Taken together, our findings provide a detailed reconstruction of plague spread within a large patrilineal kinship group and identify multiple plague infections in a population dated to the beginning of the Neolithic decline.
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| 41. |
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| 42. |
- Sjögren, Karl-Göran, 1949, et al.
(författare)
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Early Neolithic Human Bog Finds from Falbygden, Western Sweden: New Isotopic, Osteological and Histological Investigations
- 2017
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Ingår i: Journal of Neolithic Archaeology. - 2197-649X. ; 19:2017, s. 97-126
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Tidskriftsartikel (refereegranskat)abstract
- Departing from two recently dated finds of human bones in wetlands from the area of Falbygden in western Sweden, this paper describes the finds in detail and sets them in a wider context of depositional practices in the south Scandinavian Early Neolithic. The two finds are both of girls in the age of 15-20 years, and in one of the cases it is probable that she was bound and possibly intentionally drowned in shallow water. The Falbygden finds have clear parallels in Denmark and in southern Sweden in the same period. The Danish material indicates that a particular segment of the population was treated in this way, primarily young individuals around 15-20 years. Some of them show signs of disease or deformations, many have signs of trauma, and a couple have been found with cords around the neck, suggesting violent deaths. In a number of cases, they were also found in pairs. One of the Falbygden finds, the so-called Hallonflickan, was also unusual in that her Sr isotope ratio indicates that the was born far away, probably in Scania in southern Sweden. Whether other finds of this kind were also long distance movers is not known. Direct bone datings show that this practice is established at the same time as the introduction of agriculture and of the Funnel Beaker culture in Scandinavia, around 4000 BC, and continues until ca 3000 BC after which it disappears for ca 1000 years. Deposition of humans in wetlands is paralleled by deposition of animals, pottery and stone tools, and we suggest that these form parts of a complex of ritual practices established over a large area at the time of the earliest Scandinavian agriculture.
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| 43. |
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| 44. |
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| 45. |
- Wilhelmson, Helene, et al.
(författare)
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Migration and integration on the Baltic island of Öland in the Iron Age
- 2017
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Ingår i: Journal of Archaeological Science: Reports. - : Elsevier BV. - 2352-409X. ; 12, s. 183-196
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Tidskriftsartikel (refereegranskat)abstract
- This study explores a bi-isotopic approach to migration, adding δ18O values to samples with 87Sr/86Sr values for 109 individuals from the Iron Age (500 BCE–1050 CE) on the island of Öland, Sweden. Determining a local baseline for 87Sr/86Sr was complicated due to the wide range of variation in faunal samples so we divided the human values into three groups: local, non-local and undetermined. The addition of δ18O isotopes allowed identifying further non locals than the data from the 87Sr/86Sr alone provided. We found significant migration rates in both the Early period (500 BCE–400 CE) with 30% non-locals and in the Late (400–1050 CE), more than doubling to 68%. In both periods the non-locals appear to have diverse geographical origins. In order to study integration and migration patterns we use a bioarchaeological approach to these non cremated individuals who come from all types of contexts, i.e. not just burials. This allows discussing the cultural and social integration of non-locals. Integration is apparent in both periods and in the Late period, with a higher proportion of non-locals, there is both integration and diversity. The proportion of female non-locals suggest a mobility in both periods, especially the Late, that is relatively large. Our results of diverse non-local origins, female mobility and integration on Öland throughout the Iron Age add a new perspective, a Scandinavian multi-isotopic bioarchaeological perspective, to current discussions of Viking movement and expansion.
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