| 1. |
- Campbell, PJ, et al.
(författare)
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Pan-cancer analysis of whole genomes
- 2020
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 578:7793, s. 82-
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Tidskriftsartikel (refereegranskat)abstract
- Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1–3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5,6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8,9; and evaluates a range of more-specialized features of cancer genomes8,10–18.
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| 2. |
- Ju, Young Seok, et al.
(författare)
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Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells.
- 2015
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Ingår i: Genome Research. - : Cold Spring Harbor Laboratory. - 1549-5469 .- 1088-9051. ; 25:6, s. 814-824
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Tidskriftsartikel (refereegranskat)abstract
- Mitochondrial genomes are separated from the nuclear genome for most of the cell cycle by the nuclear double membrane, intervening cytoplasm, and the mitochondrial double membrane. Despite these physical barriers, we show that somatically acquired mitochondrial-nuclear genome fusion sequences are present in cancer cells. Most occur in conjunction with intranuclear genomic rearrangements, and the features of the fusion fragments indicate that nonhomologous end joining and/or replication-dependent DNA double-strand break repair are the dominant mechanisms involved. Remarkably, mitochondrial-nuclear genome fusions occur at a similar rate per base pair of DNA as interchromosomal nuclear rearrangements, indicating the presence of a high frequency of contact between mitochondrial and nuclear DNA in some somatic cells. Transmission of mitochondrial DNA to the nuclear genome occurs in neoplastically transformed cells, but we do not exclude the possibility that some mitochondrial-nuclear DNA fusions observed in cancer occurred years earlier in normal somatic cells.
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| 3. |
- Wilson, Katherine M, et al.
(författare)
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Development of a sensitive trial-ready poly(GP) CSF biomarker assay for C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis.
- 2022
-
Ingår i: Journal of neurology, neurosurgery, and psychiatry. - : BMJ. - 1468-330X .- 0022-3050. ; 93:7, s. 761-771
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Tidskriftsartikel (refereegranskat)abstract
- A GGGGCC repeat expansion in the C9orf72 gene is the most common cause of genetic frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS). As potential therapies targeting the repeat expansion are now entering clinical trials, sensitive biomarker assays of target engagement are urgently required. Our objective was to develop such an assay.We used the single molecule array (Simoa) platform to develop an immunoassay for measuring poly(GP) dipeptide repeat proteins (DPRs) generated by the C9orf72 repeat expansion in cerebrospinal fluid (CSF) of people with C9orf72-associated FTD/ALS.We show the assay to be highly sensitive and robust, passing extensive qualification criteria including low intraplate and interplate variability, a high precision and accuracy in measuring both calibrators and samples, dilutional parallelism, tolerance to sample and standard freeze-thaw and no haemoglobin interference. We used this assay to measure poly(GP) in CSF samples collected through the Genetic FTD Initiative (N=40 C9orf72 and 15 controls). We found it had 100% specificity and 100% sensitivity and a large window for detecting target engagement, as the C9orf72 CSF sample with the lowest poly(GP) signal had eightfold higher signal than controls and on average values from C9orf72 samples were 38-fold higher than controls, which all fell below the lower limit of quantification of the assay. These data indicate that a Simoa-based poly(GP) DPR assay is suitable for use in clinical trials to determine target engagement of therapeutics aimed at reducing C9orf72 repeat-containing transcripts.
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| 4. |
- Alexandrov, Ludmil B., et al.
(författare)
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Signatures of mutational processes in human cancer
- 2013
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 500:7463, s. 415-421
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Tidskriftsartikel (refereegranskat)abstract
- All cancers are caused by somatic mutations; however, understanding of the biological processes generating these mutations is limited. The catalogue of somatic mutations from a cancer genome bears the signatures of the mutational processes that have been operative. Here we analysed 4,938,362 mutations from 7,042 cancers and extracted more than 20 distinct mutational signatures. Some are present in many cancer types, notably a signature attributed to the APOBEC family of cytidine deaminases, whereas others are confined to a single cancer class. Certain signatures are associated with age of the patient at cancer diagnosis, known mutagenic exposures or defects in DNA maintenance, but many are of cryptic origin. In addition to these genome-wide mutational signatures, hypermutation localized to small genomic regions, 'kataegis', is found in many cancer types. The results reveal the diversity of mutational processes underlying the development of cancer, with potential implications for understanding of cancer aetiology, prevention and therapy.
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| 5. |
- Davies, Helen R., et al.
(författare)
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HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
- 2017
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Ingår i: Nature Medicine. - : Springer Science and Business Media LLC. - 1546-170X .- 1078-8956. ; 23:4, s. 517-525
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Tidskriftsartikel (refereegranskat)abstract
- Approximately 1-5% of breast cancers are attributed to inherited mutations in BRCA1 or BRCA2 and are selectively sensitive to poly(ADP-ribose) polymerase (PARP) inhibitors. In other cancer types, germline and/or somatic mutations in BRCA1 and/or BRCA2 (BRCA1/BRCA2) also confer selective sensitivity to PARP inhibitors. Thus, assays to detect BRCA1/BRCA2-deficient tumors have been sought. Recently, somatic substitution, insertion/deletion and rearrangement patterns, or 'mutational signatures', were associated with BRCA1/BRCA2 dysfunction. Herein we used a lasso logistic regression model to identify six distinguishing mutational signatures predictive of BRCA1/BRCA2 deficiency. A weighted model called HRDetect was developed to accurately detect BRCA1/BRCA2-deficient samples. HRDetect identifies BRCA1/BRCA2-deficient tumors with 98.7% sensitivity (area under the curve (AUC) = 0.98). Application of this model in a cohort of 560 individuals with breast cancer, of whom 22 were known to carry a germline BRCA1 or BRCA2 mutation, allowed us to identify an additional 22 tumors with somatic loss of BRCA1 or BRCA2 and 47 tumors with functional BRCA1/BRCA2 deficiency where no mutation was detected. We validated HRDetect on independent cohorts of breast, ovarian and pancreatic cancers and demonstrated its efficacy in alternative sequencing strategies. Integrating all of the classes of mutational signatures thus reveals a larger proportion of individuals with breast cancer harboring BRCA1/BRCA2 deficiency (up to 22%) than hitherto appreciated (∼1-5%) who could have selective therapeutic sensitivity to PARP inhibition.
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| 6. |
- Morganella, Sandro, et al.
(författare)
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The topography of mutational processes in breast cancer genomes
- 2016
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- Somatic mutations in human cancers show unevenness in genomic distribution that correlate with aspects of genome structure and function. These mutations are, however, generated by multiple mutational processes operating through the cellular lineage between the fertilized egg and the cancer cell, each composed of specific DNA damage and repair components and leaving its own characteristic mutational signature on the genome. Using somatic mutation catalogues from 560 breast cancer whole-genome sequences, here we show that each of 12 base substitution, 2 insertion/deletion (indel) and 6 rearrangement mutational signatures present in breast tissue, exhibit distinct relationships with genomic features relating to transcription, DNA replication and chromatin organization. This signature-based approach permits visualization of the genomic distribution of mutational processes associated with APOBEC enzymes, mismatch repair deficiency and homologous recombinational repair deficiency, as well as mutational processes of unknown aetiology. Furthermore, it highlights mechanistic insights including a putative replication-dependent mechanism of APOBEC-related mutagenesis.
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| 7. |
- Nik-Zainal, Serena, et al.
(författare)
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences
- 2016
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 534:7605, s. 47-54
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Tidskriftsartikel (refereegranskat)abstract
- We analysed whole-genome sequences of 560 breast cancers to advance understanding of the driver mutations conferring clonal advantage and the mutational processes generating somatic mutations. We found that 93 protein-coding cancer genes carried probable driver mutations. Some non-coding regions exhibited high mutation frequencies, but most have distinctive structural features probably causing elevated mutation rates and do not contain driver mutations. Mutational signature analysis was extended to genome rearrangements and revealed twelve base substitution and six rearrangement signatures. Three rearrangement signatures, characterized by tandem duplications or deletions, appear associated with defective homologous-recombination-based DNA repair: one with deficient BRCA1 function, another with deficient BRCA1 or BRCA2 function, the cause of the third is unknown. This analysis of all classes of somatic mutation across exons, introns and intergenic regions highlights the repertoire of cancer genes and mutational processes operating, and progresses towards a comprehensive account of the somatic genetic basis of breast cancer.
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| 8. |
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| 9. |
- Archana, M. S., et al.
(författare)
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Nanocrystalline Phases During Mechanically Activated Processing of an Iron (Fe) Aluminum (40 at% Al) Alloy
- 2014
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Ingår i: Materials and Manufacturing Processes. - 1042-6914 .- 1532-2475. ; 29:7, s. 864-869
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Tidskriftsartikel (refereegranskat)abstract
- Influence of processing conditions on in situ generation of nanocrystalline Fe(3)AlCx and Fe-Al phases during mechanically activated annealing and sintering of Fe-40 at% Al alloy was evaluated. Fe(3)AlCx, Fe3Al and ordered FeAl phases evolved even at a low temperature of 400 degrees C. The presence of carbide phase was attributed to the free carbon originating from the organic process control agent while its formation at low temperature was correlated to fast diffusion of C in the lattice assisted by the nanocrystalline structure coupled with the presence of thermal vacancies in the Fe-40 at% Al alloy. The as-sintered composite showed improved mechanical properties.
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| 10. |
- Ju, Young Seok, et al.
(författare)
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Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
- 2017
-
Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 543:7647, s. 714-718
-
Tidskriftsartikel (refereegranskat)abstract
- Somatic cells acquire mutations throughout the course of an individual's life. Mutations occurring early in embryogenesis are often present in a substantial proportion of, but not all, cells in postnatal humans and thus have particular characteristics and effects. Depending on their location in the genome and the proportion of cells they are present in, these mosaic mutations can cause a wide range of genetic disease syndromes and predispose carriers to cancer. They have a high chance of being transmitted to offspring as de novo germline mutations and, in principle, can provide insights into early human embryonic cell lineages and their contributions to adult tissues. Although it is known that gross chromosomal abnormalities are remarkably common in early human embryos, our understanding of early embryonic somatic mutations is very limited. Here we use whole-genome sequences of normal blood from 241 adults to identify 163 early embryonic mutations. We estimate that approximately three base substitution mutations occur per cell per cell-doubling event in early human embryogenesis and these are mainly attributable to two known mutational signatures. We used the mutations to reconstruct developmental lineages of adult cells and demonstrate that the two daughter cells of many early embryonic cell-doubling events contribute asymmetrically to adult blood at an approximately 2:1 ratio. This study therefore provides insights into the mutation rates, mutational processes and developmental outcomes of cell dynamics that operate during early human embryogenesis.
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| 11. |
- Kumar, S., et al.
(författare)
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Correlation of splat state with deposition characteristics of cold sprayed niobium coatings
- 2017
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Ingår i: Acta Materialia. - : Elsevier BV. - 1359-6454 .- 1873-2453. ; 130, s. 177-195
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Tidskriftsartikel (refereegranskat)abstract
- The cold spray technique has a great potential to deposit refractory metals for a variety of potential applications. Cold spraying of different metals have been addressed comprehensively to understand the deposition characteristics of the coatings. Since there is no available data on the deposition characteristics of cold sprayed Niobium, impact behavior of splats at different deposition conditions were simulated and numerically analyzed using Finite Element Modeling (FEM) and correlated with the experimental observations that highlight the role of the velocity and temperature of the particle upon impact on the bonding features. The increase in temperature of the splat drastically reduces the flow stress at the interface leading to best inter-splat bonding state. The synergistic effect of the temperature and the velocity leads to the formation of very dense, defect free niobium coating associated with deformation localization including interface melting. Formation of nanocrystalline grains at the inter-splat boundary was confirmed through TEM and compared with the FEM findings. Finally, understanding the deformation and deposition behavior of refractory metal such as niobium will be helpful to engineer the coatings for potential applications.
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| 12. |
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| 13. |
- Shanmugam, V., et al.
(författare)
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Potential natural polymer-based nanofibres for the development of facemasks in countering viral outbreaks
- 2021
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Ingår i: Journal of Applied Polymer Science. - : Wiley. - 0021-8995 .- 1097-4628. ; 138:27
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Tidskriftsartikel (refereegranskat)abstract
- The global coronavirus disease 2019 (COVID-19) pandemic has rapidly increased the demand for facemasks as a measure to reduce the rapid spread of the pathogen. Throughout the pandemic, some countries such as Italy had a monthly demand of ca. 90 million facemasks. Domestic mask manufacturers are capable of manufacturing 8 million masks each week, although the demand was 40 million per week during March 2020. This dramatic increase has contributed to a spike in the generation of facemask waste. Facemasks are often manufactured with synthetic materials that are non-biodegradable, and their increased usage and improper disposal are raising environmental concerns. Consequently, there is a strong interest for developing biodegradable facemasks made with for example, renewable nanofibres. A range of natural polymer-based nanofibres has been studied for their potential to be used in air filter applications. This review article examines potential natural polymer-based nanofibres along with their filtration and antimicrobial capabilities for developing biodegradable facemask that will promote a cleaner production.
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| 14. |
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| 15. |
- Brinkman, Arie B., et al.
(författare)
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Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation
- 2019
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10:1
-
Tidskriftsartikel (refereegranskat)abstract
- Global loss of DNA methylation and CpG island (CGI) hypermethylation are key epigenomic aberrations in cancer. Global loss manifests itself in partially methylated domains (PMDs) which extend up to megabases. However, the distribution of PMDs within and between tumor types, and their effects on key functional genomic elements including CGIs are poorly defined. We comprehensively show that loss of methylation in PMDs occurs in a large fraction of the genome and represents the prime source of DNA methylation variation. PMDs are hypervariable in methylation level, size and distribution, and display elevated mutation rates. They impose intermediate DNA methylation levels incognizant of functional genomic elements including CGIs, underpinning a CGI methylator phenotype (CIMP). Repression effects on tumor suppressor genes are negligible as they are generally excluded from PMDs. The genomic distribution of PMDs reports tissue-of-origin and may represent tissue-specific silent regions which tolerate instability at the epigenetic, transcriptomic and genetic level.
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| 16. |
- Ghomi, Erfan Rezvani, et al.
(författare)
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A collection of the novel coronavirus (COVID-19) detection assays, issues, and challenges
- 2021
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Ingår i: Heliyon. - : Elsevier BV. - 2405-8440. ; 7:6
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Forskningsöversikt (refereegranskat)abstract
- The global pandemic of COVID-19 has rapidly increased the number of infected cases as well as asymptomatic individuals in many, if not all the societies around the world. This issue increases the demand for accurate and rapid detection of SARS-CoV-2. While accurate and rapid detection is critical for diagnosing SARS-CoV-2, the appropriate course of treatment must be chosen to help patients and prevent its further spread. Testing platform accuracy with high sensitivity and specificity for SARS-CoV-2 is equally important for clinical, regional, and global arenas to mitigate secondary transmission rounds. The objective of this article is to compare the current detection technology and introduce the most accurate and rapid ones that are suitable for pandemic circumstances. Hence, the importance of rapid detection in societies is discussed initially. Following this, the current technology for rapid detection of SARS-CoV-2 is explained and classified into three different categories: nucleic acid-based, protein-based, and point of care (PoC) detection testing. Then, the current issues for diagnostic procedures in laboratories are discussed. Finally, the role of new technologies in countering COVID-19 is also introduced to assist researchers in the development of accurate and timely detection of coronaviruses. As coronavirus continues to affect human lives in a detrimental manner, the development of rapid and accurate virus detection methods could promote COVID-19 diagnosis accessible to both individuals and the mass population at patient care. In this regard, rRT-PCR and multiplex RT-PCR detection techniques hold promise.
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| 17. |
- Lohia, A., et al.
(författare)
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Deposition of Nanocomposite Coatings Employing a Hybrid APS + SPPS Technique
- 2014
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Ingår i: Journal of thermal spray technology (Print). - : Springer New York LLC. - 1059-9630 .- 1544-1016. ; 23:7, s. 1054-1064
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Tidskriftsartikel (refereegranskat)abstract
- A novel approach hybridizing the conventional atmospheric plasma spraying and the solution precursor plasma spraying techniques has been explored to develop nanocomposite coatings. The above hybrid processing route involves simultaneous feeding of an appropriate solution precursor and commercially available spray-grade powder feedstock to realize microstructures comprising nanostructured and micron-sized features, which are unique in thermal spraying. The attractive prospects offered by this hybrid technique for deposition of nanocomposite coatings are specifically highlighted in this paper through a case study. Plasma sprayed Mo-alloy coatings are known for their good tribological characteristics and widely used in many applications. Further augmentation in performance of these coatings is expected through incorporation of distributed nanostructured oxide phases in the microstructure. Successful development of such coatings using a spray-grade Mo-alloy powder and a suitable oxide-forming solution precursor has been demonstrated. Splat formation under varied processing conditions has been comprehensively investigated and related to microstructure and tribological behavior of the coatings to assess the efficacy of the above nanocomposite coatings for wear resistant applications. © 2014, ASM International.
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| 18. |
- Nik-Zainal, Serena, et al.
(författare)
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Mutational Processes Molding the Genomes of 21 Breast Cancers
- 2012
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Ingår i: Cell. - : Elsevier BV. - 1097-4172 .- 0092-8674. ; 149:5, s. 979-993
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Tidskriftsartikel (refereegranskat)abstract
- All cancers carry somatic mutations. The patterns of mutation in cancer genomes reflect the DNA damage and repair processes to which cancer cells and their precursors have been exposed. To explore these mechanisms further, we generated catalogs of somatic mutation from 21 breast cancers and applied mathematical methods to extract mutational signatures of the underlying processes. Multiple distinct single- and double-nucleotide substitution signatures were discernible. Cancers with BRCA1 or BRCA2 mutations exhibited a characteristic combination of substitution mutation signatures and a distinctive profile of deletions. Complex relationships between somatic mutation prevalence and transcription were detected. A remarkable phenomenon of localized hypermutation, termed "kataegis,'' was observed. Regions of kataegis differed between cancers but usually colocalized with somatic rearrangements. Base substitutions in these regions were almost exclusively of cytosine at TpC dinucleotides. The mechanisms underlying most of these mutational signatures are unknown. However, a role for the APOBEC family of cytidine deaminases is proposed.
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| 19. |
- Nik-Zainal, Serena, et al.
(författare)
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The Life History of 21 Breast Cancers
- 2012
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Ingår i: Cell. - : Elsevier BV. - 1097-4172 .- 0092-8674. ; 149:5
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Tidskriftsartikel (refereegranskat)abstract
- Cancer evolves dynamically as clonal expansions supersede one another driven by shifting selective pressures, mutational processes, and disrupted cancer genes. These processes mark the genome, such that a cancer's life history is encrypted in the somatic mutations present. We developed algorithms to decipher this narrative and applied them to 21 breast cancers. Mutational processes evolve across a cancer's lifespan, with many emerging late but contributing extensive genetic variation. Subclonal diversification is prominent, and most mutations are found in just a fraction of tumor cells. Every tumor has a dominant subclonal lineage, representing more than 50% of tumor cells. Minimal expansion of these subclones occurs until many hundreds to thousands of mutations have accumulated, implying the existence of long-lived, quiescent cell lineages capable of substantial proliferation upon acquisition of enabling genomic changes. Expansion of the dominant subclone to an appreciable mass may therefore represent the final rate-limiting step in a breast cancer's development, triggering diagnosis.
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| 20. |
- Pemmasani, S. P., et al.
(författare)
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Characterization of multilayer nitride coatings by electron microscopy and modulus mapping
- 2013
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Ingår i: Materials Characterization. - : Elsevier BV. - 1044-5803 .- 1873-4189. ; 81, s. 7-18
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Tidskriftsartikel (refereegranskat)abstract
- This paper discusses multi-scale characterization of physical vapour deposited multilayer nitride coatings using a combination of electron microscopy and modulus mapping. Multilayer coatings with a triple layer structure based on TiAlN and nanocomposite nitrides with a nano-multilayered architecture were deposited by Cathodic arc deposition and detailed microstructural studies were carried out employing Energy Dispersive Spectroscopy, Electron Backscattered Diffraction, Focused Ion Beam and Cross sectional Transmission Electron Microscopy in order to identify the different phases and to study microstructural features of the various layers formed as a result of the deposition process. Modulus mapping was also performed to study the effect of varying composition on the moduli of the nano-multilayers within the triple layer coating by using a Scanning Probe Microscopy based technique. To the best of our knowledge, this is the first attempt on modulus mapping of cathodic arc deposited nitride multilayer coatings. This work demonstrates the application of Scanning Probe Microscopy based modulus mapping and electron microscopy for the study of coating properties and their relation to composition and microstructure. © 2013 Elsevier Inc.
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| 21. |
- Pemmasani, S. P., et al.
(författare)
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Structure-property correlations in cathodic arc deposited tialn coatings
- 2012
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Ingår i: Materials Science Forum. - 0255-5476 .- 1662-9752. - 9783037852941 ; 702-703:1, s. 967-970
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Tidskriftsartikel (refereegranskat)abstract
- PVD hard coatings, notably transition metal nitrides and carbides, are being increasingly used by industry for improving the life and machining speeds of cutting and forming tools. There has been an increasing trend towards use of complex coatings, based on ternary and even more complex multi-component systems, as well as in novel configurations such as multilayers, superlattices, nanolayers and graded coatings, to achieve superior properties in the tool as well as the finished product. The service properties of the coatings are known to be influenced by their microstructure, phase assembly and composition, apart from the orientation and stress states which can be suitably tailored for diverse applications. In the present study, a ternary coating based on Titanium Aluminum Nitride was deposited on high speed steel substrates by cathodic arc evaporation under varied bias voltage conditions. Asdeposited coatings were characterized by X-ray diffraction, Residual Stress Analysis, Scanning Electron Microscopy (SEM), EBSD and FIB. Mechanical and tribological characteristics of the coatings were evaluated by nanoindentation and nanoscratch testing, respectively. The variations in coating hardness and adhesion with the bias voltage were studied. The changes in coating microstructure as a consequence of variation in bias voltage were also examined. Results from the above investigations are presented to illustrate how a combination of electron microscopy with nanoindentation. © (2012) Trans Tech Publications, Switzerland.
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| 22. |
- Quinn, K., et al.
(författare)
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Weibel-Induced Filamentation during an Ultrafast Laser-Driven Plasma Expansion
- 2012
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Ingår i: Physical Review Letters. - American Physical Society. - 0031-9007 .- 1079-7114. ; 108:13, s. 135001-
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Tidskriftsartikel (refereegranskat)abstract
- The development of current instabilities behind the front of a cylindrically expanding plasma has been investigated experimentally via proton probing techniques. A multitude of tubelike filamentary structures is observed to form behind the front of a plasma created by irradiating solid-density wire targets with a high-intensity (I∼1019 W/cm2), picosecond-duration laser pulse. These filaments exhibit a remarkable degree of stability, persisting for several tens of picoseconds, and appear to be magnetized over a filament length corresponding to several filament radii. Particle-in-cell simulations indicate that their formation can be attributed to a Weibel instability driven by a thermal anisotropy of the electron population. We suggest that these results may have implications in astrophysical scenarios, particularly concerning the problem of the generation of strong, spatially extended and sustained magnetic fields in astrophysical jets.
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| 23. |
- Renugopalakrishnan, V, et al.
(författare)
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Nanomaterials for energy conversion applications
- 2009
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Ingår i: Nanomaterials for Energy Conversion Applications. - : American Scientific Publishers. ; , s. 155-178
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Bokkapitel (övrigt vetenskapligt/konstnärligt)
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| 24. |
- Safarpour, F., et al.
(författare)
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Kappa-carrageenan based hybrid hydrogel for soft tissue engineering applications
- 2023
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Ingår i: Biomedical Materials. - : IOP Publishing. - 1748-6041 .- 1748-605X. ; 18:5
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Tidskriftsartikel (refereegranskat)abstract
- Biological materials such as cell-derived membrane vesicles have emerged as alternative sources for molecular delivery systems, owing to multicomponent features, the inherent functionalities and signaling networks, and easy-to-carry therapeutic agents with various properties. Herein, red blood cell membrane (RBCM) vesicle-laden methacrylate kappa-carrageenan (KaMA) composite hydrogel is introduced for soft tissue engineering. Results revealed that the characteristics of hybrid hydrogels were significantly modulated by changing the RBCM vesicle content. For instance, the incorporation of 20% (v/v) RBCM significantly enhanced compressive strength from 103 & PLUSMN; 26 kPa to 257 & PLUSMN; 18 kPa and improved toughness under the cyclic loading from 1.0 & PLUSMN; 0.4 kJ m(-3) to 4.0 & PLUSMN; 0.5 kJ m(-3) after the 5(th) cycle. RBCM vesicles were also used for the encapsulation of curcumin (CUR) as a hydrophobic drug molecule. Results showed a controlled release of CUR over three days of immersion in PBS solution. The RBCM vesicles laden KaMA hydrogels also supported in vitro fibroblast cell growth and proliferation. In summary, this research sheds light on KaMA/RBCM hydrogels, that could reveal fine-tuned properties and hydrophobic drug release in a controlled manner.
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| 25. |
- Sivakumar, G., et al.
(författare)
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Effect of SPPS Process Parameters on In-Flight Particle Generation and Splat Formation to Achieve Pure α-Al2O3 Coatings
- 2015
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Ingår i: Journal of thermal spray technology (Print). - : Springer New York LLC. - 1059-9630 .- 1544-1016. ; 24:7, s. 1221-1234
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Tidskriftsartikel (refereegranskat)abstract
- The present paper describes the role of process conditions in developing phase-pure α-Al2O3 coatings using solution precursor plasma spraying. Different precursor combinations were employed and two key parameters, namely plasma power and substrate pre-heat temperature, were varied. Detailed studies of in-flight formed particles and splat characteristics were found to correlate well with the Al2O3 coating characteristics. The Al2O3-forming precursor formulation was also found to be crucial in determining the phase constitution of the deposited coatings. © 2015 ASM International
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| 26. |
- Thandlam, Venugopal, et al.
(författare)
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Evaluation of MODIS/CERES downwelling shortwave and longwave radiation over global tropical oceans
- 2016
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Ingår i: Remote Sensing of the Atmosphere, Clouds, and Precipitation VI. - : SPIE-Intl Soc Optical Eng.
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Konferensbidrag (refereegranskat)abstract
- In the present work, we have evaluated the satellite-estimated daily downwelling shortwave (QI) and longwave (QA) radiation from Moderate Resolution Imaging Spectrometer (MODIS) /Clouds and the Earth's Radiant Energy System (CM) with moored buoy observations of Global Tropical MooredBuoy Array (GTMBA) during 2001-2009. The global observed mean of QI and QA in GTMBA(CM) are 228 (233) W/m2 and 410 (405) W/m2 respectively. The mean QI shows a positive bias (~3-7 W/m2) whereas QA underestimates with a mean negative bias of ~3-6 W/m2 in the tropical Pacific, Atlantic and the Indian Ocean. CM underestimates the buoy observed variability in both QI and QA in all the tropical oceans. The correlation coefficient (CC) values in QI (Qa) are 0.79(0.88) 0.79(0.84) and0.81(0.94) over the Pacific, Atlantic and Indian ocean respectively. The Root Mean Square Error(RMSE) values in QI ranged between 35-43 W/m2 with lowest values in the Atlantic Ocean and highest in the Indian Ocean. The RMSE values in QA are less as compared to QI and it is ~9 W/m2in all the tropical ocean. The spatial distributions of QI and QA shows seasonality with lower and higher values coinciding with the Inter-Tropical Convergence Zone(ITCZ) locations in the QI and QA
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| 27. |
- Thandlam, Venugopal, Mr. 1987-, et al.
(författare)
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Quantifying the role of antecedent Southwestern Indian Ocean capacitance on the summer monsoon rainfall variability over homogeneous regions of India
- 2023
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Ingår i: Scientific Reports. - : Springer Nature. - 2045-2322. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- The role of ocean variability is at a focal point in improving the weather and climate forecasts at different spatial and temporal scales. We study the effect of antecedent southwestern Indian Ocean mean sea level anomaly (MSLA) and sea surface temperature anomalies (SSTA) as a proxy to upper ocean heat capacitance on all India summer monsoon rainfall (AISMR) during 1993–2019. SSTA and MSLA over the southwestern Indian Ocean (SWIO) have been influenced by El Niño-Southern Oscillation (ENSO), the impact of ENSO-induced SWIO variability was low on rainfall variability over several homogeneous regions. Rainfall over northeast (NE) and North India (EI) has been modulated by ENSO-induced SSTA and MSLA over SWIO, thus effecting the total AISMR magnitude. The ENSO-induced changes in heat capacitance (SSTA and MSLA) over SWIO during antecedent months has less impact on west coast of India, central India and North India (NI) rainfall variability. The long-term trend in pre-monsoonal SSTA and MSLA over SWIO shows decreasing rainfall trend over NI, NE, and EI in the recent time. Furthermore, the cooler (warmer) anomaly over the western Indian Ocean affects rainfall variability adversely (favourably) due to the reversal of the wind pattern during the pre-monsoon period. While SSTA and MSLA are increasing in the SWIO, large-scale variability of these parameters during preceding winter and pre-monsoon months combined with surface winds could impact the inter-annual AISMR variability over homogeneous regions of India. Similarly, from an oceanic perspective, the antecedent heat capacitance over SWIO on an inter-annual time scale has been the key to the extreme monsoon rainfall variability.
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| 28. |
- Valleti, K., et al.
(författare)
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Influence of substrate temperature and bias voltage on properties of chromium nitride thin films deposited by cylindrical cathodic arc deposition
- 2011
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Ingår i: Journal of Vacuum Science & Technology. A. Vacuum, Surfaces, and Films. - 0734-2101 .- 1520-8559. ; 29:5
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Tidskriftsartikel (refereegranskat)abstract
- Chromium nitride (CrN) thin films have been deposited on high speed steel (HSS) substrates using rotating cylindrical cathodic arc deposition technique and the influence of substrate temperature (TSub) and bias voltage (VSub) on the physical/mechanical and corrosion resistance properties of the films comprehensively investigated. An increase in TSub was found to significantly influence the phase composition of films, which changed from a mixture of Cr CrxN CrN to predominantly CrN. This was also accompanied by an increase in droplet formation and columnar grain size. With increase in TSub over the range investigated (230 °C to 500 °C), an increase in adhesion strength by nearly 30 was observed. In contrast, change in VSub from -50 to -150 V resulted in the growth of highly dense (111) oriented CrN thin films but with relatively little change in phase constitution, adhesion strength or microdroplet formation. A change in TSub from 230 °C to 500 °C was accompanied by a nearly 50 fall in corrosion resistance, plausibly due to the concomitant decrease in pure Cr phase content and increase in macroscopic defect concentration with increase in TSub. In view of the above, CrN thin films deposited using cylindrical cathodic arc deposition technique yield better corrosion resistance and mechanical properties when grown at low TSub. © 2011 American Vacuum Society.
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