| 1. |
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| 2. |
- van Rheenen, W, et al.
(författare)
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Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology
- 2021
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Ingår i: Nature genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 53:12, s. 1636-
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Tidskriftsartikel (refereegranskat)abstract
- Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with a lifetime risk of one in 350 people and an unmet need for disease-modifying therapies. We conducted a cross-ancestry genome-wide association study (GWAS) including 29,612 patients with ALS and 122,656 controls, which identified 15 risk loci. When combined with 8,953 individuals with whole-genome sequencing (6,538 patients, 2,415 controls) and a large cortex-derived expression quantitative trait locus (eQTL) dataset (MetaBrain), analyses revealed locus-specific genetic architectures in which we prioritized genes either through rare variants, short tandem repeats or regulatory effects. ALS-associated risk loci were shared with multiple traits within the neurodegenerative spectrum but with distinct enrichment patterns across brain regions and cell types. Of the environmental and lifestyle risk factors obtained from the literature, Mendelian randomization analyses indicated a causal role for high cholesterol levels. The combination of all ALS-associated signals reveals a role for perturbations in vesicle-mediated transport and autophagy and provides evidence for cell-autonomous disease initiation in glutamatergic neurons.
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| 3. |
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| 4. |
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| 5. |
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| 6. |
- Bagnardi, V, et al.
(författare)
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Light alcohol drinking and cancer: a meta-analysis
- 2013
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Ingår i: Annals of oncology : official journal of the European Society for Medical Oncology. - : Elsevier BV. - 1569-8041. ; 24:2, s. 301-308
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Tidskriftsartikel (refereegranskat)
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| 7. |
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| 8. |
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| 9. |
- Edger, Patrick P., et al.
(författare)
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The butterfly plant arms-race escalated by gene and genome duplications
- 2015
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 112:27, s. 8362-8366
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Tidskriftsartikel (refereegranskat)abstract
- Coevolutionary interactions are thought to have spurred the evolution of key innovations and driven the diversification of much of life on Earth. However, the genetic and evolutionary basis of the innovations that facilitate such interactions remains poorly understood. We examined the coevolutionary interactions between plants (Brassicales) and butterflies (Pieridae), and uncovered evidence for an escalating evolutionary arms-race. Although gradual changes in trait complexity appear to have been facilitated by allelic turnover, key innovations are associated with gene and genome duplications. Furthermore, we show that the origins of both chemical defenses and of molecular counter adaptations were associated with shifts in diversification rates during the arms-race. These findings provide an important connection between the origins of biodiversity, coevolution, and the role of gene and genome duplications as a substrate for novel traits.
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| 10. |
- Handel, Adam E, et al.
(författare)
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Developmental dynamics of the neural crest-mesenchymal axis in creating the thymic microenvironment.
- 2022
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Ingår i: Science advances. - : American Association for the Advancement of Science (AAAS). - 2375-2548. ; 8:19
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Tidskriftsartikel (refereegranskat)abstract
- The thymic stroma is composed of epithelial and nonepithelial cells providing separate microenvironments controlling homing, differentiation, and selection of hematopoietic precursor cells to functional T cells. Here, we explore at single-cell resolution the complex composition and dynamic changes of the nonepithelial stromal compartment across different developmental stages in the human and mouse thymus, and in an experimental model of the DiGeorge syndrome, the most common form of human thymic hypoplasia. The detected gene expression signatures identify previously unknown stromal subtypes and relate their individual molecular profiles to separate differentiation trajectories and functions, revealing an unprecedented heterogeneity of different cell types that emerge at discrete developmental stages and vary in their expression of key regulatory signaling circuits and extracellular matrix components. Together, these findings highlight the dynamic complexity of the nonepithelial thymus stroma and link this to separate instructive roles essential for normal thymus organogenesis and tissue maintenance.
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| 11. |
- Kapun, Martin, et al.
(författare)
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Drosophila Evolution over Space and Time (DEST) : A New Population Genomics Resource
- 2021
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Ingår i: Molecular biology and evolution. - : Oxford University Press (OUP). - 0737-4038 .- 1537-1719. ; 38:12, s. 5782-5805
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Tidskriftsartikel (refereegranskat)abstract
- Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome data sets from natural populations of this species have been published over the last years. A major challenge is the integration of disparate data sets, often generated using different sequencing technologies and bioinformatic pipelines, which hampers our ability to address questions about the evolution of this species. Here we address these issues by developing a bioinformatics pipeline that maps pooled sequencing (Pool-Seq) reads from D. melanogaster to a hologenome consisting of fly and symbiont genomes and estimates allele frequencies using either a heuristic (PoolSNP) or a probabilistic variant caller (SNAPE-pooled). We use this pipeline to generate the largest data repository of genomic data available for D. melanogaster to date, encompassing 271 previously published and unpublished population samples from over 100 locations in >20 countries on four continents. Several of these locations have been sampled at different seasons across multiple years. This data set, which we call Drosophila Evolution over Space and Time (DEST), is coupled with sampling and environmental metadata. A web-based genome browser and web portal provide easy access to the SNP data set. We further provide guidelines on how to use Pool-Seq data for model-based demographic inference. Our aim is to provide this scalable platform as a community resource which can be easily extended via future efforts for an even more extensive cosmopolitan data set. Our resource will enable population geneticists to analyze spatiotemporal genetic patterns and evolutionary dynamics of D. melanogaster populations in unprecedented detail.
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| 12. |
- Lammers, Y., et al.
(författare)
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Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
- 2019
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Ingår i: Boreas. - : Wiley. - 0300-9483 .- 1502-3885. ; 48:2, s. 317-329
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Tidskriftsartikel (refereegranskat)abstract
- While there are extensive macro- and microfossil records of a range of plants and animals from the Quaternary, earthworms and their close relatives amongst annelids are not preserved as fossils and therefore the knowledge of their past distributions is limited. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide valuable information about terrestrial and aquatic environmental conditions. Their DNA might be preserved in sediments, which offers an alternative method for detection. Here we analyse lacustrine sediments from lakes in the Polar Urals, Arctic Russia, covering the period 24000-1300cal. a BP, and NE Norway, covering 10700-3300cal. a BP, using a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23000 and 14000cal. a BP, and four times in the Norwegian core at 11000cal. a BP and between 3600-3300cal. a BP), worm extracellular DNA bycatch' was rather high. In this paper we present the first reported worm detection from ancient DNA. Our results demonstrate that both aquatic and terrestrial clitellates can be identified in late-Quaternary lacustrine sediments, and the ecological information retrievable from this group warrants further research with a more targeted approach.
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| 13. |
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| 14. |
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| 15. |
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| 16. |
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| 17. |
- Codenotti, S, et al.
(författare)
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Hyperactive Akt1 Signaling Increases Tumor Progression and DNA Repair in Embryonal Rhabdomyosarcoma RD Line and Confers Susceptibility to Glycolysis and Mevalonate Pathway Inhibitors
- 2022
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Ingår i: Cells. - : MDPI AG. - 2073-4409. ; 11:18
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Tidskriftsartikel (refereegranskat)abstract
- In pediatric rhabdomyosarcoma (RMS), elevated Akt signaling is associated with increased malignancy. Here, we report that expression of a constitutively active, myristoylated form of Akt1 (myrAkt1) in human RMS RD cells led to hyperactivation of the mammalian target of rapamycin (mTOR)/70-kDa ribosomal protein S6 kinase (p70S6K) pathway, resulting in the loss of both MyoD and myogenic capacity, and an increase of Ki67 expression due to high cell mitosis. MyrAkt1 signaling increased migratory and invasive cell traits, as detected by wound healing, zymography, and xenograft zebrafish assays, and promoted repair of DNA damage after radiotherapy and doxorubicin treatments, as revealed by nuclear detection of phosphorylated H2A histone family member X (γH2AX) through activation of DNA-dependent protein kinase (DNA-PK). Treatment with synthetic inhibitors of phosphatidylinositol-3-kinase (PI3K) and Akt was sufficient to completely revert the aggressive cell phenotype, while the mTOR inhibitor rapamycin failed to block cell dissemination. Furthermore, we found that pronounced Akt1 signaling increased the susceptibility to cell apoptosis after treatments with 2-deoxy-D-glucose (2-DG) and lovastatin, enzymatic inhibitors of hexokinase, and 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase (HMGCR), especially in combination with radiotherapy and doxorubicin. In conclusion, these data suggest that restriction of glucose metabolism and the mevalonate pathway, in combination with standard therapy, may increase therapy success in RMS tumors characterized by a dysregulated Akt signaling.
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| 18. |
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| 19. |
- De Wit, Pierre, 1978, et al.
(författare)
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Grania (Annelida: Clitellata: Enchytraeidae) of the Great Barrier Reef, Australia, including four new species and a re-description of Grania trichaeta Jamieson, 1977 : Grania of the Great Barrier Reef
- 2009
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Ingår i: Zootaxa. - 1175-5326. ; 2165, s. 16-38
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Tidskriftsartikel (refereegranskat)abstract
- This study describes the fauna of the marine enchytraeid genus Grania at two locations on the Australian Great Barrier Reef: Lizard and Heron Islands. Collections were made from 1979 to 2006, yielding four new species: Grania breviductus sp. n., Grania regina sp. n., Grania homochaeta sp. n. and Grania colorata sp. n.. A re-description of Grania trichaeta Jamieson, 1977 based on new material is also included, along with notes and amendments on G. hyperoadenia Coates, 1990 and G. integra Coates & Stacey, 1997, the two latter being recorded for the first time from eastern Australia. COI barcode sequences were obtained from G. trichaeta and G. colorata and deposited with information on voucher specimens in the Barcode of Life database and GenBank; the mean intraspecific variation is 1.66 % in both species, while the mean interspecific divergence is 25.54 %. There seem to be two phylogeographic elements represented in the Great Barrier Grania fauna; one tropical with phylogenetic affinities to species found in New Caledonia and Hong Kong, and one southern (manifested at the more southerly located Heron Island) with affinities to species found in Southern Australia, Tasmania and Antarctica.
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| 20. |
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| 21. |
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| 22. |
- Erséus, Christer, 1951, et al.
(författare)
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Molecular phylogeny of Enchytraeidae (Annelida, Clitellata).
- 2010
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Ingår i: Molecular Phylogenetics and Evolution. - 1055-7903. ; 57:2, s. 849-858
-
Tidskriftsartikel (refereegranskat)abstract
- A multigene data set (12S, 16S, and COI mitochondrial DNA; 18S and 28S nuclear DNA) was analyzed by Bayesian inference to estimate the phylogeny of a sample of the clitellate family Enchytraeidae (86 species representing 14 nominal genera). Monophyly, as well as a basal dichotomy, of the family Enchytraeidae obtained maximum support, with one clade containing Hemienchytraeus and Achaeta, the other the remaining 12 genera analysed. The latter group is basally resolved in several well-supported clades. Lumbricillus and Grania are closely related. Bryodrilus, Oconnorella, Henlea and two species of Marionina (M. cf. riparia, and M. communis) form a well-supported clade. Cognettia is sister to Stercutus, and Cernosvitoviella sister to Mesenchytraeus, and the four together appear to be a monophyletic group. A large part of the taxonomically problematic Marionina appears to be a group not closely related to the type species (M. georgiana), and this group also includes Enchytronia. Further, this Marionina/Enchytronia group appears to be sister to a clade comprising the more or less littoral marine genera Stephensoniella and Enchytraeus. Hemifridericia, Buchholzia and Fridericia, the three genera characterized by two types of coelomocytes, also form a well-supported clade. The study corroborates most of the multi-species genera analysed (Cognettia, Cernosvitoviella, Mesenchytraeus, Oconnorella, Henlea, Enchytraeus, Grania, Buchholzia and Fridericia); only Lumbricillus and Marionina are non-monophyletic as currently defined.
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| 23. |
- Erséus, Christer, 1951, et al.
(författare)
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Riverine and riparian clitellates of three drainages in southern Sweden
- 2005
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Ingår i: Annales De Limnologie-International Journal of Limnology. - 0003-4088. ; 41:3, s. 183-194
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Tidskriftsartikel (refereegranskat)abstract
- The species diversity of Clitellata (a group of annelid worms) is described for three river systems in different parts of southern Sweden. The water of one river (Save (a) over circlen) discharges into the harbour of Goteborg on the Swedish west coast, that of the other two rivers (Svart (a) over circlen and Kila (a) over circlen) into the Baltic Sea. A total of 143 species, representing the taxa Enchytraeidae (61), Propappidae (1), Lumbricidae (15), Lumbriculidae (6), Tubificidae (4 Rhyacodrilinae, 33 Naidinae, 13 Tubificinae), and Hirudinida (10), are reported. Of these, 24 enchytraeids and six lumbricids were found only in the riparian zone, i.e., in the semi-aquatic habitats of the river banks. Six species of Enchytraeidae could not be assigned to any known species and are likely to be new to science. In addition, the following species are recorded from Sweden for the first time : Achaeta brevivasa, Fridericia benti, F. healyae, F. lenta, F. sylvatica, Oconnorella tubifera (all Enchytraeidae), Aporrectodea limicola (Lumbricidae), Stylodrilus brachystylus (Lumbriculidae), Dero dorsalis, Nais behningi, Haber speciosus, and Peipsidrilus ?saamicus (all Tubificidae). Overall, the species composition is typical of today's fauna of the once glaciated Northern Europe, but for the family Enchytraeidae, the biogeographical affinity of Sweden is stronger with Denmark and Germany than with, e.g., the British Isles and the eastern parts of Central Europe.
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| 24. |
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| 25. |
- Klinth, Mårten, 1990, et al.
(författare)
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New insights into the systematics of Lumbricillus and Marionina (Clitellata: Enchytraeidae) inferred from Southern Hemisphere samples, including three new species
- 2022
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Ingår i: Zoological Journal of the Linnean Society. - : Oxford University Press (OUP). - 0024-4082 .- 1096-3642. ; 194:4, s. 1103-1133
-
Tidskriftsartikel (refereegranskat)abstract
- Enchytraeid worms collected in South Africa and on the Marion, South Orkney, South Georgia and South Shetland Islands during 2008-2015 were studied using morphology and seven genetic markers. Nine species were recognized: one terrestrial (Christensenidrilus blocki) and all the others marine littoral (five Lumbricillus and three Marionina s.s.). An estimated phylogeny including other enchytraeids from the Northern Hemisphere, many of which are members of Lumbricillus and some representing Marionina s.l., confirmed a non-monophyletic Lumbricillus, with some of its current species closely related to Grania or Marionina s.s. The phylogeny also corroborated a non-monophyletic Marionina s.l., with Marionina s.s. closely related to Grania and Lumbricillus s.l., but not to the remaining sequenced 'Marionina' or to Ch. blocki. These results provide a long-needed starting point for a revision of both Marionina and Lumbricillus. We provide morphological descriptions of all nine species, three of which are new to science: Lumbricillus finisafricae sp. nov., Lumbricillus nivalis sp. nov., and Marionina fusca sp. nov. Comments on three related species of Marionina s.s. based on re-examined type material are also provided.
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| 26. |
- Klinth, Mårten, 1990, et al.
(författare)
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Taxonomy of North European Lumbricillus (Clitellata, Enchytraeidae)
- 2017
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Ingår i: Zookeys. - : Pensoft Publishers. - 1313-2989 .- 1313-2970. ; :703, s. 15-96
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Tidskriftsartikel (refereegranskat)abstract
- Lumbricillus is a genus of clitellate worms with about 80 described species that inhabit marine and limnic habitats. This study follows a recent analysis of the phylogeny of the genus based on 24 species of Lumbricillus collected mainly in Norway and Sweden. We provide the illustrated taxonomic descriptions of all these species and describe two of them as new; Lumbricillus latithecatus sp. n. and L. scandicus sp. n. Using the recent phylogeny, we informally divide Lumbricillus into five distinct morphological groups, into which we also tentatively place the Lumbricillus species not included in this study. Furthermore, we establish Claparedrilus gen. n., with the type species C. semifuscoides sp. n., and transfer Pachydrilus semifuscus Claparede, 1861 (previously referred to Lumbricillus) into said genus.
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| 27. |
- Martinsson, Svante, 1985, et al.
(författare)
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On the identity of Chamaedrilus glandulosus (Michaelsen, 1888) (Clitellata, Enchytraeidae), with the description of a new species
- 2015
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Ingår i: Zookeys. - : Pensoft Publishers. - 1313-2989 .- 1313-2970. ; :501, s. 1-14
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Tidskriftsartikel (refereegranskat)abstract
- The taxonomy of Chamaedrilus glandulosus (Michaelsen, 1888) s. l., most commonly known previously as Cognettia glandulosa, is revised. A recent molecular systematic study has shown that this taxon harbours two cryptic, but genetically well separated lineages, each warranting species status. In this study these two lineages are scrutinized morphologically, on the basis of Michaelsen's type material as well as newly collected specimens from Central and Northern Europe. Chamaedrilus glandulosus s. s. is redescribed and Chamaedrilus varisetosus sp. n. is recognized as new to science. The two species are morphologically very similar, differing mainly in size, but seem to prefer different habitats, with Chamaedrilus glandulosus being a larger aquatic species, and Chamaedrilus varisetosus being smaller and mainly found in moist to wet soil.
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| 28. |
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| 29. |
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| 30. |
- Oftedal, BE, et al.
(författare)
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The chaperonin CCT8 controls proteostasis essential for T cell maturation, selection, and function
- 2021
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Ingår i: Communications biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 4:1, s. 681-
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Tidskriftsartikel (refereegranskat)abstract
- T cells rely for their development and function on the correct folding and turnover of proteins generated in response to a broad range of molecular cues. In the absence of the eukaryotic type II chaperonin complex, CCT, T cell activation induced changes in the proteome are compromised including the formation of nuclear actin filaments and the formation of a normal cell stress response. Consequently, thymocyte maturation and selection, and T cell homeostatic maintenance and receptor-mediated activation are severely impaired. In the absence of CCT-controlled protein folding, Th2 polarization diverges from normal differentiation with paradoxical continued IFN-γ expression. As a result, CCT-deficient T cells fail to generate an efficient immune protection against helminths as they are unable to sustain a coordinated recruitment of the innate and adaptive immune systems. These findings thus demonstrate that normal T cell biology is critically dependent on CCT-controlled proteostasis and that its absence is incompatible with protective immunity.
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| 31. |
- Rota, E., et al.
(författare)
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Green light to an integrative view of Microscolex phosphoreus (Duges, 1837) (Annelida: Clitellata: Acanthodrilidae)
- 2018
-
Ingår i: Zootaxa. - : Magnolia Press. - 1175-5326 .- 1175-5334. ; 4496:1, s. 175-189
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Tidskriftsartikel (refereegranskat)abstract
- The small synanthropic and peregrine earthworm Microscolex phosphoreus (Duges, 1837) is reported for the first time from Siberia. Morphological and DNA barcode (COI) analyses of this and widely separate samples worldwide demonstrate that, as currently identified, M. phosphoreus is a heterogeneous taxon, with divergent lineages occurring often in the same locality and hardly providing geographically structured genetic signals. The combined morphological and genetic evidence suggests that at least four of the found clades should be reclassified as separate species, both morphologically and genetically distinct from each other. However, as the specimen number was limited and only the COI gene was studied for the genetic work, we hesitate in formally describing new species. There would also be the problem of assigning the available names to specific lineages. Our findings encourage careful external and anatomical examination and using reliable characters such as the interchaetal distances and spermathecal morphology for correct identification and for deeper evaluation of cryptic diversity in this interesting bioluminescent worm.
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| 32. |
- Rota, E., et al.
(författare)
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In search of Marionina (Clitellata, Enchytraeidae): A taxonomic history of the genus and re-description of the type species Pachydrilus georgianus Michaelsen, 1888
- 2008
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Ingår i: Italian Journal of Zoology. - : Informa UK Limited. - 1125-0003 .- 1748-5851. ; 75, s. 417-436
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Tidskriftsartikel (refereegranskat)abstract
- An approach towards a systematic revision of Marionina Michaelsen, 1890 is made through an historical overview of its nomenclature and definition, and a thorough characterization of its type species, the South Georgian marine littoral Pachydrilus georgianus Michaelsen, 1888. Relevant sections of early enchytraeid literature provide the background for appreciating the complex taxonomic history of the genus and giving a final word as to the controversial validity of its name, authority and date. Marionina in its current acceptation comprises about 100 nominal species, but the paper documents how, since its establishment, the genus has been an artificial assemblage of unrelated taxa, whose taxonomy cannot be sorted out (1) without finding new morphological characters and improving the standard of descriptions, and (2) without using a total evidence approach (morphology and molecules) within a phylogenetic framework. Confusion about the identity of the type species, originally briefly described and only partially figured, is unravelled upon examination of the syntypes available in Hamburg and Berlin. Since neither series proved to be monospecific, a lectotype is designated to assure correct and consistent application of the name in the future.
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| 33. |
- Rota, E., et al.
(författare)
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Mitochondrial evidence supports a Nearctic origin for the spreading limicolous earthworm Sparganophilus tamesis Benham, 1892 (Clitellata, Sparganophilidae)
- 2016
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Ingår i: Contributions to Zoology. - : Brill. - 1383-4517 .- 1875-9866. ; 85:1, s. 113-119
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Tidskriftsartikel (refereegranskat)abstract
- We analysed samples of Sparganophilus taken at the corners of its distribution area in Europe (UK, Germany and Italy). No mitochondrial genetic divergence within and amongst them was found, neither in COI nor in 16S. Further, the COI haplotype was also identical to two sequences from Ontario, Canada in the Barcoding of Life Data System (BOLD) database. Our European COI and 16S sequences showed only minimal differentiation (only 1 or 2 substitutions) from specimens newly collected in Illinois and Washington states (USA), as well as from a COI haplotype from Tennessee (USA) in BOLD. An additional COI haplotype from Illinois (found in BOLD) is 2.1% different from the other haplotypes but clearly belongs to the same lineage of Sparganophilus. This geographically broad but genetically compact group fits the morphological diagnosis of S. tamesis Benham, 1892 as revised by Jamieson (1971) and is seen as evidence that all European populations 1) belong to the same species, 2) derive from a recent introduction, 3) are con specific with the most widespread species of Sparganophilus in North America, and that 4) S. tamesis is a senior synonym of S. eiseni Smith, 1895. The single European haplotype does not refute the possibility of its spread from a single introduced source population.
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| 34. |
- Rota, E., et al.
(författare)
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New data and hypotheses on the invasiveness, habitat selection, and ecological role of the limicolous earthworm Sparganophilus tamesis Benham, 1892
- 2018
-
Ingår i: Fundamental and Applied Limnology. - : Schweizerbart. - 1863-9135. ; 192:2, s. 129-136
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Tidskriftsartikel (refereegranskat)abstract
- A recent molecular barcode study certified the conspecificity of mutually distant European populations of the limicolous earthworm Sparganophilus tamesis Benham, 1892 with the most widespread species of Sparganophilus in North America, and that all the analysed European worms descend from a recent introduction, probably via one or more point-source events with subsequent dispersion. We present the first records from Belgium and the Atlantic coast of southern France, and further genetic evidence confirming the species’ high dispersal abilities and historical movement within and across European drainage boundaries, as well as its capacity to establish in different types of aquatic ecosystems, including oligotrophic habitats. Experimental evidence suggests that the activity of Sparganophilus combined with that of oxygen-releasing plants, such as Lobelia dortmanna, may enhance the mobilization of refractory N pools within oligotrophic sediments, and, therefore, act as facilitator for both the macrophyte and the microbial communities in the rhizosphere. © 2018 E. Schweizerbart’sche Verlagsbuchhandlung, Stuttgart, Germany.
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| 35. |
- Rota, E., et al.
(författare)
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The diverse Grania fauna (Clitellata: Enchytraeidae) of the Esperance area, Western Australia, with descriptions of two new species
- 2007
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Ingår i: Journal of Natural History. - : Informa UK Limited. - 0022-2933 .- 1464-5262. ; 41:17-20, s. 999-1023
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Tidskriftsartikel (refereegranskat)abstract
- Seven species of the marine enchytraeid genus Grania Southern, 1913 are described from sediments sampled during the 2003 International Workshop on the Marine Flora and Fauna of Esperance Bay and the Recherche Archipelago, on the southern coast of Western Australia. Two species are new to science, the euryhaline Tasmanian G. dolichura Rota and Ersus, 2000 represents a new record for the state, and the remaining four species were known from other parts of Western Australia. Grania quaerens sp. n. is recognized by having a high chaetal index ( = short chaetal foot), small coelomocytes, penial apparati with long whip-like terminal stylets, conspicuous spermathecae with ectally bulbous ducts, and ectally granulated ampullae housing sperm rings in their ental region. Grania sperantia sp. n. is readily distinguishable by the complete lack of lateral chaetae, a multiple-banded pattern of the clitellum, extremely long sperm funnels, and the intrasegmental location of the spermathecal pores. The latter new species and four others in the collection (G. bykane Coates, 1990, G. crassiducta Coates, 1990, G. dolichura, and G. ersei Coates, 1990) are remarkable in possessing the head organ, a sensory structure unique to Grania that was not noted previously in Western Australian species. When considering the whole genus, the geographic pattern of the head organ appears southern-centred: of the 17 species of Grania reported to possess it, as many as 13 inhabit the southern latitudes. The seventh species of the Esperance collection, G. vacivasa Coates and Stacey, 1993, is notable for the kind of items found in its gut and the unusual appearance of its pygidium.
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| 36. |
- Rota, E., et al.
(författare)
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Two new bioluminescent Henlea from Siberia and lack of molecular support for Hepatogaster (Annelida, Clitellata, Enchytraeidae)
- 2018
-
Ingår i: Organisms Diversity & Evolution. - : Springer Science and Business Media LLC. - 1439-6092 .- 1618-1077. ; 18:3, s. 291-312
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Tidskriftsartikel (refereegranskat)abstract
- Two bioluminescent enchytraeids, Henlea petushkovi sp. n. and Henlea rodionovae sp. n., are described from the Krasnoyarsk and Irkutsk regions in Eastern Siberia. These large potworms exhibit the typical light-production pattern reported repeatedly in the genus and recently elucidated by Russian researchers in its main biophysical and biochemical aspects. Morphology and DNA indicate that the two species are very closely related, but clearly divergent in the strength of the body wall (thick and opaque in H. petushkovi), structure of the prostomium (in H. rodionovae unprecedentedly wrinkled and mobile), brain shape (almost equilateral in H. petushkovi), size of coelomocytes (60–85 μm in H. petushkovi) and structure of intestinal diverticula (tulip-shaped in H. petushkovi, apple-shaped in H. rodionovae). Limited hybridization seems to occur between them, supported by a single case of conflict between COI and morphology, and a few intermediate morphotypes were noted in greenhouse populations. The new species are phylogenetically distant from all known congeners so far DNA-barcoded, even those that, like them, respond to the diagnosis of the putative subgenus Hepatogaster Čejka, 1910 (multitubular gut diverticula in VIII, indented brain, dorsal blood vessel from IX, prominent spermathecal glands, and nephridia from 5/6). In fact, our phylogenetic analyses dismiss Hepatogaster as an artificial (polyphyletic) taxon. Issues related to the definition of H. nasuta (Eisen, 1878), H. ochracea (Eisen, 1878) and H. irkutensis Burov, 1929, three species originally described from Siberia, indicate that Henlea taxonomy is still in a state of flux, as regards not only species interrelationships but also species definitions.
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| 37. |
- Rota, Jadranka, et al.
(författare)
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The importance of long-distance dispersal and establishment events in small insects : Historical biogeography of metalmark moths (Lepidoptera, Choreutidae)
- 2016
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Ingår i: Journal of Biogeography. - : Wiley. - 0305-0270. ; 43:6, s. 1254-1265
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Tidskriftsartikel (refereegranskat)abstract
- Aim: To determine the importance of different biogeographical processes (vicariance, dispersal, long-distance dispersal and establishment or LDDE) for the current distribution of metalmark moths, a group of small insects, using a time-calibrated molecular tree. Location: Global. Methods: We sampled 104 species of metalmark moths with representatives from all six major biogeographical regions of the world (Afrotropical, Australasian, Neotropical, Nearctic, Oriental and Palaearctic). The taxon sampling includes c. 20% of known species in the family and covers both subfamilies. Using an eight-locus molecular data set and secondary calibration points, we inferred a time-calibrated tree, which was then used for ancestral range estimation with variants of the dispersal-extinction-cladogenesis model (DEC), some of which incorporated the founder-event j-parameter for modelling of LDDEs (DECj). Results: The inferred phylogeny is well resolved and in accordance with earlier works. The metalmark moth distribution is best explained with DECj models. It remains unclear what the ancestral area was. Different models differ in the number and type of events estimated - DEC models infer vicariance for several nodes where DECj models usually infer LDDEs. However, the pattern that emerges from all the analyses is that dispersal and/or LDDE over transoceanic distances such as between the Afrotropics and Australasia and the Afrotropics and Neotropics occurred several times in the evolutionary history of this group. Main conclusions: Vicariance may have played an important role in the early evolution of metalmark moths, while dispersal and LDDEs mostly shaped the group's distribution later on. Based on insect flight research using aerial radars, the best mechanism for explaining how small insects cross oceans is by being adapted for exploiting atmospheric conditions as opposed to employing active flight.
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| 38. |
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| 39. |
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| 40. |
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| 41. |
- Rota, M, et al.
(författare)
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Erratum
- 2018
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Ingår i: International journal of cancer. - : Wiley. - 1097-0215 .- 0020-7136. ; 143:8, s. E10-E10
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Tidskriftsartikel (refereegranskat)
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| 42. |
- Rota, M, et al.
(författare)
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Erratum
- 2020
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Ingår i: International journal of cancer. - : Wiley. - 1097-0215 .- 0020-7136. ; 146:11, s. E6-E6
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 43. |
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| 44. |
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| 45. |
- Segar, Simon T., et al.
(författare)
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Species swarms and their caterpillar colonisers : phylogeny and polyphenols determine host plant specificity in New Guinean Lepidoptera
- 2023
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Ingår i: Frontiers in Ecology and Evolution. - 2296-701X. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- The majority of multi-cellular terrestrial life is found in tropical forests and is either an invertebrate or a plant: for decades ecologists have sought to understand why. As global change erodes the list of extant species on our planet quantifying what species remain, along with their origins and ecology, contributes to our ability to preserve ecosystem functioning and resilience. Here we study three feeding guilds of caterpillars (Lepidoptera) and seek to understand the drivers of their diet breadth across four diverse tropical plant genera in Papua New Guinea. Host specificity is central to biodiversity estimates and the resilience of ecological networks. Specifically, we calculate distance-based host specificity in relation to plant phylogenetic relationships alongside chemical and mechanical traits of leaves. In terms of chemical defenses, we focus on the major polyphenol groups, a compound class shared across many plant species. We refine our data exploration using food webs and ordinations to pick out specific traits of relevance to insect host specificity. Our results showed that the degree of specialization for caterpillars took the following order: phylogenetic>polyphenol>mechanical, such that insect specificity was explained best by host phylogeny and polyphenol chemistry in our study system. Leaf mining insects had higher host specificity than those feeding externally. Of the traits studied hexahydroxydiphenoyl derivatives, galloyl derivatives, trichome density, quinic acid derivatives, myricetins and successional index explained the most variation in overall insect community structure. Our findings build on earlier studies of New Guinean rainforest communities and add a mechanistic explanation to previous findings that host genera are functional islands for insect herbivores. Further, we demonstrate that different plant genera combine different defensive traits that appear to drive associated insect diversity. Our approach integrates trait data and phylogeny to explore dimensions of specialization and we welcome metabolomic studies that will provide more detailed explanations for insect-herbivore host use. Finally, chemical diversity is directly linked to organismal diversity and by studying a range of insect herbivore guilds we make a connection between feeding ecology and specialization that will help to predict species interactions and, potentially, the persistence of ecological networks.
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| 46. |
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| 47. |
- Toma, M, et al.
(författare)
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Left Heart Disease Phenotype in Elderly Patients with Pulmonary Arterial Hypertension: Insights from the Italian PATRIARCA Registry
- 2022
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Ingår i: Journal of clinical medicine. - : MDPI AG. - 2077-0383. ; 11:23
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Tidskriftsartikel (refereegranskat)abstract
- Pulmonary arterial hypertension (PAH) in the elderly is often associated with left heart disease (LHD), prompting concerns about the use of pulmonary vasodilators. The PATRIARCA registry enrolled ≥70 year-old PAH or chronic thromboembolic pulmonary hypertension (CTEPH) patients at 11 Italian centers from 1 December 2019 through 15 September 2022. After excluding those with CTEPH, post-capillary PH at the diagnostic right heart catheterization (RHC), and/or incomplete data, 23 (33%) of a total of 69 subjects met the criteria proposed in the AMBITION trial to suspect LHD. Diabetes [9 (39%) vs. 6 (13%), p = 0.01] and chronic kidney disease [14 (61%) vs. 12 (26%), p = 0.003] were more common, and the last RHC pulmonary artery wedge pressure [14 ± 5 vs. 10 ± 3 mmHg, p < 0.001] was higher and pulmonary vascular resistance [5.56 ± 3.31 vs. 8.30 ± 4.80, p = 0.02] was lower in LHD than non-LHD patients. However, PAH therapy was similar, with 13 (57%) and 23 (50%) subjects, respectively, taking two oral drugs. PAH medication patterns remained comparable between LHD and non-LHD patients also when the former [37, 54%] were identified by atrial fibrillation and echocardiographic features of LHD, in addition to the AMBITION criteria. In this real-world snapshot, elderly PAH patients were treated with pulmonary vasodilators, including combinations, despite a remarkable prevalence of a LHD phenotype.
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| 48. |
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| 49. |
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| 50. |
- Vitelli-Storelli, F, et al.
(författare)
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Family History and Gastric Cancer Risk: A Pooled Investigation in the Stomach Cancer Pooling (STOP) Project Consortium
- 2021
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Ingår i: Cancers. - : MDPI AG. - 2072-6694. ; 13:15
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Tidskriftsartikel (refereegranskat)abstract
- Although there is a clear relationship between family history (FH) and the risk of gastric cancer (GC), quantification is still needed in relation to different histological types and anatomical sites, and in strata of covariates. The objective was to analyze the risk of GC according to first-degree FH in a uniquely large epidemiological consortium of GC. This investigation includes 5946 cases and 12,776 controls from 17 studies of the Stomach Cancer Pooling (StoP) Project consortium. Summary odds ratios (OR) and the corresponding 95% confidence intervals (CIs) were calculated by pooling study-specific ORs using fixed-effect model meta-analysis techniques. Stratified analyses were carried out by sex, age, tumor location and histological type, smoking habit, socioeconomic status, alcohol intake and fruit consumption. The pooled OR for GC was 1.84 (95% CI: 1.64–2.04; I2 = 6.1%, P heterogeneity = 0.383) in subjects with vs. those without first-degree relatives with GC. No significant differences were observed among subgroups of sex, age, geographic area or study period. Associations tended to be stronger for non-cardia (OR = 1.82; 95% CI: 1.59–2.05 for subjects with FH) than for cardia GC (OR = 1.38; 95% CI: 0.98–1.77), and for the intestinal (OR = 1.92; 95% CI: 1.62–2.23) than for the diffuse histotype (OR = 1.62; 95% CI: 1.28–1.96). This analysis confirms the effect of FH on the risk of GC, reporting an approximately doubled risk, and provides further quantification of the risk of GC according to the subsite and histotype. Considering these findings, accounting for the presence of FH to carry out correct prevention and diagnosis measures is of the utmost importance.
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