| 1. |
- Aad, G, et al.
(författare)
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- 2015
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swepub:Mat__t
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| 2. |
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| 3. |
- Bauer, M., et al.
(författare)
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Variations in seasonal solar insolation are associated with a history of suicide attempts in bipolar I disorder
- 2021
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Ingår i: International Journal of Bipolar Disorders. - : Springer Science and Business Media LLC. - 2194-7511. ; 9:1
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Tidskriftsartikel (refereegranskat)abstract
- Background Bipolar disorder is associated with circadian disruption and a high risk of suicidal behavior. In a previous exploratory study of patients with bipolar I disorder, we found that a history of suicide attempts was associated with differences between winter and summer levels of solar insolation. The purpose of this study was to confirm this finding using international data from 42% more collection sites and 25% more countries. Methods Data analyzed were from 71 prior and new collection sites in 40 countries at a wide range of latitudes. The analysis included 4876 patients with bipolar I disorder, 45% more data than previously analyzed. Of the patients, 1496 (30.7%) had a history of suicide attempt. Solar insolation data, the amount of the sun's electromagnetic energy striking the surface of the earth, was obtained for each onset location (479 locations in 64 countries). Results This analysis confirmed the results of the exploratory study with the same best model and slightly better statistical significance. There was a significant inverse association between a history of suicide attempts and the ratio of mean winter insolation to mean summer insolation (mean winter insolation/mean summer insolation). This ratio is largest near the equator which has little change in solar insolation over the year, and smallest near the poles where the winter insolation is very small compared to the summer insolation. Other variables in the model associated with an increased risk of suicide attempts were a history of alcohol or substance abuse, female gender, and younger birth cohort. The winter/summer insolation ratio was also replaced with the ratio of minimum mean monthly insolation to the maximum mean monthly insolation to accommodate insolation patterns in the tropics, and nearly identical results were found. All estimated coefficients were significant at p < 0.01. Conclusion A large change in solar insolation, both between winter and summer and between the minimum and maximum monthly values, may increase the risk of suicide attempts in bipolar I disorder. With frequent circadian rhythm dysfunction and suicidal behavior in bipolar disorder, greater understanding of the optimal roles of daylight and electric lighting in circadian entrainment is needed.
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| 4. |
- Bauer, M., et al.
(författare)
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Exploratory study of ultraviolet B (UVB) radiation and age of onset of bipolar disorder
- 2023
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Ingår i: International Journal of Bipolar Disorders. - 2194-7511. ; 11:1
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundSunlight contains ultraviolet B (UVB) radiation that triggers the production of vitamin D by skin. Vitamin D has widespread effects on brain function in both developing and adult brains. However, many people live at latitudes (about > 40 N or S) that do not receive enough UVB in winter to produce vitamin D. This exploratory study investigated the association between the age of onset of bipolar I disorder and the threshold for UVB sufficient for vitamin D production in a large global sample.MethodsData for 6972 patients with bipolar I disorder were obtained at 75 collection sites in 41 countries in both hemispheres. The best model to assess the relation between the threshold for UVB sufficient for vitamin D production and age of onset included 1 or more months below the threshold, family history of mood disorders, and birth cohort. All coefficients estimated at P <= 0.001.ResultsThe 6972 patients had an onset in 582 locations in 70 countries, with a mean age of onset of 25.6 years. Of the onset locations, 34.0% had at least 1 month below the threshold for UVB sufficient for vitamin D production. The age of onset at locations with 1 or more months of less than or equal to the threshold for UVB was 1.66 years younger.ConclusionUVB and vitamin D may have an important influence on the development of bipolar disorder. Study limitations included a lack of data on patient vitamin D levels, lifestyles, or supplement use. More study of the impacts of UVB and vitamin D in bipolar disorder is needed to evaluate this supposition.
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| 5. |
- Forrest, ARR, et al.
(författare)
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A promoter-level mammalian expression atlas
- 2014
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 507:7493, s. 462-
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Tidskriftsartikel (refereegranskat)
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| 6. |
- Noguchi, S, et al.
(författare)
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FANTOM5 CAGE profiles of human and mouse samples
- 2017
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Ingår i: Scientific data. - : Springer Science and Business Media LLC. - 2052-4463. ; 4, s. 170112-
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Tidskriftsartikel (refereegranskat)abstract
- In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities.
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| 7. |
- van Doorn, Ljcv, et al.
(författare)
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Improved Cerebrospinal Fluid-Based Discrimination between Alzheimer's Disease Patients and Controls after Correction for Ventricular Volumes
- 2017
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Ingår i: Journal of Alzheimers Disease. - : IOS Press. - 1387-2877 .- 1875-8908. ; 56:2, s. 543-555
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Tidskriftsartikel (refereegranskat)abstract
- Cerebrospinal fluid (CSF) biomarkers may support the diagnosis of Alzheimer's disease (AD). We studied if the diagnostic power of AD CSF biomarker concentrations, i.e., A beta(42), total tau (t-tau), and phosphorylated tau (p-tau), is affected by differences in lateral ventricular volume (VV), using CSF biomarker data and magnetic resonance imaging (MRI) scans of 730 subjects, from 13 European Memory Clinics. We developed a Matlab-algorithm for standardized automated segmentation analysis of T1 weighted MRI scans in SPM8 for determining VV, and computed its ratio with total intracranial volume (TIV) as proxy for total CSF volume. The diagnostic power of CSF biomarkers (and their combination), either corrected for VV/TIV ratio or not, was determined by ROC analysis. CSF A beta(42) levels inversely correlated to VV/TIV in the whole study population (A beta(42): r = -0.28; p < 0.0001). For CSF t-tau and p-tau, this association only reached statistical significance in the combined MCI and AD group (t-tau: r = -0.15; p-tau: r = -0.13; both p < 0.01). Correction for differences in VV/TIV improved the differentiation of AD versus controls based on CSF A beta(42) alone (AUC: 0.75 versus 0.81) or in combination with t-tau (AUC: 0.81 versus 0.91). In conclusion, differences in VV may be an important confounder in interpreting CSF A beta(42) levels.
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| 8. |
- Elimian, KO, et al.
(författare)
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Assessing the capacity of symptom scores to predict COVID-19 positivity in Nigeria: a national derivation and validation cohort study
- 2021
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Ingår i: BMJ open. - : BMJ. - 2044-6055. ; 11:9, s. e049699-
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Tidskriftsartikel (refereegranskat)abstract
- This study aimed to develop and validate a symptom prediction tool for COVID-19 test positivity in Nigeria.DesignPredictive modelling study.SettingAll Nigeria States and the Federal Capital Territory.ParticipantsA cohort of 43 221 individuals within the national COVID-19 surveillance dataset from 27 February to 27 August 2020. Complete dataset was randomly split into two equal halves: derivation and validation datasets. Using the derivation dataset (n=21 477), backward multivariable logistic regression approach was used to identify symptoms positively associated with COVID-19 positivity (by real-time PCR) in children (≤17 years), adults (18–64 years) and elderly (≥65 years) patients separately.Outcome measuresWeighted statistical and clinical scores based on beta regression coefficients and clinicians’ judgements, respectively. Using the validation dataset (n=21 744), area under the receiver operating characteristic curve (AUROC) values were used to assess the predictive capacity of individual symptoms, unweighted score and the two weighted scores.ResultsOverall, 27.6% of children (4415/15 988), 34.6% of adults (9154/26 441) and 40.0% of elderly (317/792) that had been tested were positive for COVID-19. Best individual symptom predictor of COVID-19 positivity was loss of smell in children (AUROC 0.56, 95% CI 0.55 to 0.56), either fever or cough in adults (AUROC 0.57, 95% CI 0.56 to 0.58) and difficulty in breathing in the elderly (AUROC 0.53, 95% CI 0.48 to 0.58) patients. In children, adults and the elderly patients, all scoring approaches showed similar predictive performance.ConclusionsThe predictive capacity of various symptom scores for COVID-19 positivity was poor overall. However, the findings could serve as an advocacy tool for more investments in resources for capacity strengthening of molecular testing for COVID-19 in Nigeria.
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| 9. |
- Hickey, J. W., et al.
(författare)
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Spatial mapping of protein composition and tissue organization : a primer for multiplexed antibody-based imaging
- 2022
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Ingår i: Nature Methods. - : Nature Research. - 1548-7091 .- 1548-7105. ; 19:3, s. 284-295
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Tidskriftsartikel (refereegranskat)abstract
- Tissues and organs are composed of distinct cell types that must operate in concert to perform physiological functions. Efforts to create high-dimensional biomarker catalogs of these cells have been largely based on single-cell sequencing approaches, which lack the spatial context required to understand critical cellular communication and correlated structural organization. To probe in situ biology with sufficient depth, several multiplexed protein imaging methods have been recently developed. Though these technologies differ in strategy and mode of immunolabeling and detection tags, they commonly utilize antibodies directed against protein biomarkers to provide detailed spatial and functional maps of complex tissues. As these promising antibody-based multiplexing approaches become more widely adopted, new frameworks and considerations are critical for training future users, generating molecular tools, validating antibody panels, and harmonizing datasets. In this Perspective, we provide essential resources, key considerations for obtaining robust and reproducible imaging data, and specialized knowledge from domain experts and technology developers.
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| 11. |
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| 12. |
- de Zegher, F, et al.
(författare)
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Androgens and fetal growth
- 1998
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Ingår i: Hormone research. - : S. Karger AG. - 0301-0163. ; 50:4, s. 243-244
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Tidskriftsartikel (refereegranskat)abstract
- Boys are heavier than girls at term birth. Children with a 46,XY karyotype and androgen insensitivity syndrome (clinically complete form and/or proven mutations in the androgen receptor gene) were found to have a birth weight comparable to that of girls. These findings support the hypothesis that the difference in birth weight between boys and girls is generated by androgen action.
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| 13. |
- Karsli, O., et al.
(författare)
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Ordovician S-type granites in the western Sakarya Zone, NW Turkey; linkage to a back-arc setting
- 2023
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Ingår i: Lithos. - : Elsevier BV. - 0024-4937. ; 442-443
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Tidskriftsartikel (refereegranskat)abstract
- Turkey's Early Paleozoic tectonic evolution has received much attention in recent years. Early Paleozoic intrusive rocks are mainly distributed across Europe, Turkey (Istanbul-Zonguldak Zone, Strandja Zone, and Tauride Block), and Iran. However, the Early Paleozoic rocks have not yet been identified in north Turkey's Sakarya Zone, and thus the Early Paleozoic paleogeography of the Sakarya Zone remains enigmatic. Here, we provide new field observations, petrography, geochemistry, and geochronology of the western Sakarya Zone to identify the nature, origin, and tectonic setting of the Ordovician magmatic rocks cropping out in the So center dot gut area (Bilecik, northwest Turkey). Our Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICP-MS) U-Pb analyses on zircons suggest that the So center dot gut metagranites were emplaced at-484-461 Ma (except two zircons with ages of 490 and 494 Ma). There are abundant inherited zircon cores in the So center dot gut metagranites, with ages of >500 Ma to-2.2 Ga. The inherited Cadomian cores give concordant ages of 588 and 572 Ma. The So center dot gut metagranites are felsic and have high SiO2 (72-76 wt%) and K2O (4.1-5.3 wt%) contents, with high K2O/Na2O ratios (1.2-1.9), and low Mg# (17-35) values. The samples are Ca-poor (CaO = 0.52-0.68 wt%) and show peraluminous [A/CNK = molar Al2O3/(K2O + CaO + Na2O) = 1.15-1.28] and high-K calc-alkaline geochemical characters, with high modal content of muscovite (-10%), consistent with S-type compositions. The samples have low REE concentrations, with negative Eu anomalies. Ordovician zircon rims show epsilon Hf(t) values of +3.6 to-35.4, whereas inherited zircon cores have epsilon Hf(t) values of +33.9 to-26.1. Our data, in conjunction with previous studies, suggest that the So center dot gut metagranites were generated by fluid-absent muscovite-dehydration melting of metasediments accumulated in a back-arc setting. This back-arc basin was characterized by a denuded continental crust with abundant pelite-dominated sediments and minor input of juvenile mafic melts. Our results, combined with previously published data and paleogeographic reconstructions, allow us to conclude that the Ordovician S-type granites were formed by progressive back-arc extension and crustal thinning prompted by the rollback of the southward subducting oceanic-lithosphere slab. This led to the opening of the Rheic Ocean on the northern side of Gondwana in response to the final closure and termination of the Tornquist Ocean as a branch of the Iapetus Ocean. We argue that the Ordovician S-type granites from the northern side of Gondwana could signal significant crustal reworking away from any clear continental collision zone.
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| 14. |
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| 15. |
- Oğuz-Saka, Simge, et al.
(författare)
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Two-stage bimodal volcanism in a Late Cretaceous arc/back-arc setting, NE Turkey: Constraints from volcano-stratigraphy, zircon U–Pb and 40Ar/39Ar geochronology and whole-rock elemental and Sr-Nd-Pb isotope geochemistry
- 2023
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Ingår i: Lithos. - : Elsevier. - 0024-4937 .- 1872-6143. ; 440-441
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Tidskriftsartikel (refereegranskat)abstract
- The eastern Blacksea magmatic arc (EBMA) in the eastern Sakarya Zone (ESZ) provides an excellent opportunity to investigate birth of an extensional intra-arc and back-arc settings in the Late Cretaceous over the Early Cretaceous northern passive margin of the Neotethys Ocean. Volcano-stratigraphy clearly shows that the Late Cretaceous volcanic activity of the EBMA occurred in two major phases. Bimodality, characterized by mafic/basaltic rocks at the base and felsic/silicic types on top of it, is a typical feature of the lower (LVS) and upper (UVS) volcanic successions in the Giresun region of the ESZ. U–Pb and Ar–Ar ages support the volcanic succession as two-stage (LVS: ca. 92–85 and UVS: ca. 83–67 Ma) bimodal volcanism. Both the volcanic successions are represented by similar rock types consisting of tholeiitic to calc-alkaline basalt-basaltic andesites and calc-alkaline to shoshonitic dacite-rhyolites. Basaltic (M1- and M2-series) and felsic/silicic (F1- and F2-series) samples of the LVS and UVS have an arc-like signature with enriched large ion lithophile elements (LILEs) and light rare earth elements (LREEs) and depleted high field strength elements (HFSEs). Also, the felsic/silicic samples of the F1- and F2-series show prominent negative Sr and Eu anomalies (Eu/Eu* = 0.4 to 0.9), suggesting that plagioclase fractionation played a key role on the evolution of both felsic series. Bimodal rock series in two phases have a wide range of 87Sr/86Sr(i) (0.7048–0.7075) and 143Nd/144Nd(i) (0.5123–0.5127) ratios with variable ɛNd(i) values of −3.8 to +3.0. 206Pb/204Pb(i), 207Pb/204Pb(i) and 208Pb/204Pb(i) isotope ratios of the Giresun volcanic rocks vary in the range of 17.97–18.52, 15.55–15.65 and 37.53–38.56, respectively.Geochemical and isotopic data suggest that the parental magma of the M1-basaltic rocks were probably derived from a shallow (spinel-bearing) mantle metasomatized by slab/sediment-derived fluids. In contrast, the M2-basalts seem to have been originated from a deeper mantle source (spinel-garnet transition zone) enriched by slab/sediment-derived fluids and hydrous melts (bulk sediment) metasomatism with some contributions of lower/upper crustal materials. The least evolved basaltic samples in two phases are consistent with moderate (∼10–15%) to high degree (∼20–30%) partial melting of the metasomatized mantle. The silicic melts of the F1- and F2-rocks series, on the other hand, were likely derived from melting of lower crustal materials consisting of meta-basalts/andesites and lesser amount of meta-sediments. Subsequently, these melts experienced FC ± AFC and mixing processes during their ascent and emplacement to generate high-silica (rhyolitic) melts. Our data, combined with previous studies, suggest that two-stage bimodal volcanic rocks of the Late Cretaceous in the ESZ were formed in the transition from an extensional continental intra-arc to a back-arc setting during the northward subduction of the northern branch of Neotethys Ocean.
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| 16. |
- van Waalwijk van Doorn, Linda J C, et al.
(författare)
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Improved Cerebrospinal Fluid-Based Discrimination between Alzheimer's Disease Patients and Controls after Correction for Ventricular Volumes
- 2017
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Ingår i: Journal of Alzheimer's Disease. - : IOS Press. - 1387-2877 .- 1875-8908. ; 56:2, s. 543-555
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Tidskriftsartikel (refereegranskat)abstract
- Cerebrospinal fluid (CSF) biomarkers may support the diagnosis of Alzheimer's disease (AD). We studied if the diagnostic power of AD CSF biomarker concentrations, i.e., Aβ42, total tau (t-tau), and phosphorylated tau (p-tau), is affected by differences in lateral ventricular volume (VV), using CSF biomarker data and magnetic resonance imaging (MRI) scans of 730 subjects, from 13 European Memory Clinics. We developed a Matlab-algorithm for standardized automated segmentation analysis of T1 weighted MRI scans in SPM8 for determining VV, and computed its ratio with total intracranial volume (TIV) as proxy for total CSF volume. The diagnostic power of CSF biomarkers (and their combination), either corrected for VV/TIV ratio or not, was determined by ROC analysis. CSF Aβ42 levels inversely correlated to VV/TIV in the whole study population (Aβ42: r=-0.28; p<0.0001). For CSF t-tau and p-tau, this association only reached statistical significance in the combined MCI and AD group (t-tau: r=-0.15; p-tau: r=-0.13; both p<0.01). Correction for differences in VV/TIV improved the differentiation of AD versus controls based on CSF Aβ42 alone (AUC: 0.75 versus 0.81) or in combination with t-tau (AUC: 0.81 versus 0.91). In conclusion, differences in VV may be an important confounder in interpreting CSF Aβ42 levels.
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