| 1. |
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| 2. |
- Menden, MP, et al.
(författare)
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
- 2019
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Ingår i: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10:1, s. 2674-
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Tidskriftsartikel (refereegranskat)abstract
- The effectiveness of most cancer targeted therapies is short-lived. Tumors often develop resistance that might be overcome with drug combinations. However, the number of possible combinations is vast, necessitating data-driven approaches to find optimal patient-specific treatments. Here we report AstraZeneca’s large drug combination dataset, consisting of 11,576 experiments from 910 combinations across 85 molecularly characterized cancer cell lines, and results of a DREAM Challenge to evaluate computational strategies for predicting synergistic drug pairs and biomarkers. 160 teams participated to provide a comprehensive methodological development and benchmarking. Winning methods incorporate prior knowledge of drug-target interactions. Synergy is predicted with an accuracy matching biological replicates for >60% of combinations. However, 20% of drug combinations are poorly predicted by all methods. Genomic rationale for synergy predictions are identified, including ADAM17 inhibitor antagonism when combined with PIK3CB/D inhibition contrasting to synergy when combined with other PI3K-pathway inhibitors in PIK3CA mutant cells.
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| 3. |
- Rauer, H., et al.
(författare)
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The PLATO 2.0 mission
- 2014
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Ingår i: Experimental astronomy. - : Springer Science and Business Media LLC. - 0922-6435 .- 1572-9508. ; 38:1-2, s. 249-330
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Tidskriftsartikel (refereegranskat)abstract
- PLATO 2.0 has recently been selected for ESA's M3 launch opportunity (2022/24). Providing accurate key planet parameters (radius, mass, density and age) in statistical numbers, it addresses fundamental questions such as: How do planetary systems form and evolve? Are there other systems with planets like ours, including potentially habitable planets? The PLATO 2.0 instrument consists of 34 small aperture telescopes (32 with 25 s readout cadence and 2 with 2.5 s cadence) providing a wide field-of-view (2232 deg(2)) and a large photometric magnitude range (4-16 mag). It focuses on bright (4-11 mag) stars in wide fields to detect and characterize planets down to Earth-size by photometric transits, whose masses can then be determined by ground-based radial-velocity follow-up measurements. Asteroseismology will be performed for these bright stars to obtain highly accurate stellar parameters, including masses and ages. The combination of bright targets and asteroseismology results in high accuracy for the bulk planet parameters: 2 %, 4-10 % and 10 % for planet radii, masses and ages, respectively. The planned baseline observing strategy includes two long pointings (2-3 years) to detect and bulk characterize planets reaching into the habitable zone (HZ) of solar-like stars and an additional step-and-stare phase to cover in total about 50 % of the sky. PLATO 2.0 will observe up to 1,000,000 stars and detect and characterize hundreds of small planets, and thousands of planets in the Neptune to gas giant regime out to the HZ. It will therefore provide the first large-scale catalogue of bulk characterized planets with accurate radii, masses, mean densities and ages. This catalogue will include terrestrial planets at intermediate orbital distances, where surface temperatures are moderate. Coverage of this parameter range with statistical numbers of bulk characterized planets is unique to PLATO 2.0. The PLATO 2.0 catalogue allows us to e. g.: - complete our knowledge of planet diversity for low-mass objects, - correlate the planet mean density-orbital distance distribution with predictions from planet formation theories,- constrain the influence of planet migration and scattering on the architecture of multiple systems, and - specify how planet and system parameters change with host star characteristics, such as type, metallicity and age. The catalogue will allow us to study planets and planetary systems at different evolutionary phases. It will further provide a census for small, low-mass planets. This will serve to identify objects which retained their primordial hydrogen atmosphere and in general the typical characteristics of planets in such a low-mass, low-density range. Planets detected by PLATO 2.0 will orbit bright stars and many of them will be targets for future atmosphere spectroscopy exploring their atmospheres. Furthermore, the mission has the potential to detect exomoons, planetary rings, binary and Trojan planets. The planetary science possible with PLATO 2.0 is complemented by its impact on stellar and galactic science via asteroseismology as well as light curves of all kinds of variable stars, together with observations of stellar clusters of different ages. This will allow us to improve stellar models and study stellar activity. A large number of well-known ages from red giant stars will probe the structure and evolution of our Galaxy. Asteroseismic ages of bright stars for different phases of stellar evolution allow calibrating stellar age-rotation relationships. Together with the results of ESA's Gaia mission, the results of PLATO 2.0 will provide a huge legacy to planetary, stellar and galactic science.
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| 4. |
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| 5. |
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| 6. |
- Martínez-Sánchez, Noelia, et al.
(författare)
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Hypothalamic AMPK-ER Stress-JNK1 Axis Mediates the Central Actions of Thyroid Hormones on Energy Balance
- 2017
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Ingår i: Cell Metabolism. - Cambridge, MA, United States : Cell Press. - 1550-4131 .- 1932-7420. ; 26:1, s. 212-229.e12
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Tidskriftsartikel (refereegranskat)abstract
- Thyroid hormones (THs) act in the brain to modulate energy balance. We show that central triiodothyronine (T3) regulates de novo lipogenesis in liver and lipid oxidation in brown adipose tissue (BAT) through the parasympathetic (PSNS) and sympathetic nervous system (SNS), respectively. Central T3 promotes hepatic lipogenesis with parallel stimulation of the thermogenic program in BAT. The action of T3 depends on AMP-activated protein kinase (AMPK)-induced regulation of two signaling pathways in the ventromedial nucleus of the hypothalamus (VMH): decreased ceramide-induced endoplasmic reticulum (ER) stress, which promotes BAT thermogenesis, and increased c-Jun N-terminal kinase (JNK) activation, which controls hepatic lipid metabolism. Of note, ablation of AMPKα1 in steroidogenic factor 1 (SF1) neurons of the VMH fully recapitulated the effect of central T3, pointing to this population in mediating the effect of central THs on metabolism. Overall, these findings uncover the underlying pathways through which central T3 modulates peripheral metabolism.
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| 7. |
- Barack, Leor, et al.
(författare)
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Black holes, gravitational waves and fundamental physics : a roadmap
- 2019
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Ingår i: Classical and quantum gravity. - : IOP Publishing. - 0264-9381 .- 1361-6382. ; 36:14
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Forskningsöversikt (refereegranskat)abstract
- The grand challenges of contemporary fundamental physics dark matter, dark energy, vacuum energy, inflation and early universe cosmology, singularities and the hierarchy problem all involve gravity as a key component. And of all gravitational phenomena, black holes stand out in their elegant simplicity, while harbouring some of the most remarkable predictions of General Relativity: event horizons, singularities and ergoregions. The hitherto invisible landscape of the gravitational Universe is being unveiled before our eyes: the historical direct detection of gravitational waves by the LIGO-Virgo collaboration marks the dawn of a new era of scientific exploration. Gravitational-wave astronomy will allow us to test models of black hole formation, growth and evolution, as well as models of gravitational-wave generation and propagation. It will provide evidence for event horizons and ergoregions, test the theory of General Relativity itself, and may reveal the existence of new fundamental fields. The synthesis of these results has the potential to radically reshape our understanding of the cosmos and of the laws of Nature. The purpose of this work is to present a concise, yet comprehensive overview of the state of the art in the relevant fields of research, summarize important open problems, and lay out a roadmap for future progress. This write-up is an initiative taken within the framework of the European Action on 'Black holes, Gravitational waves and Fundamental Physics'.
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| 8. |
- Acevedo-Prado, Antonio, et al.
(författare)
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Association of rhinitis with asthma prevalence and severity
- 2022
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 12:1
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Tidskriftsartikel (refereegranskat)abstract
- Asthma and rhinitis often co-exist in the same patient. Although some authors observed a higher prevalence and/or greater severity of asthma in patients with rhinitis, this view is not homogeneous and the debate continues. The aim of our study is to describe the prevalence of rhinitis in children and adolescents and to analyse their relationship with the prevalence of asthma. A multicentre study was conducted using the methodology of the International Study of Asthma and Allergies in Childhood (ISAAC). The target population of the study was all those school children aged 6–7 and 13–14 years from 6 of the main health catchment areas of Galicia (1.9 million inhabitants). The schools required were randomly selected, and all children in the targeted age ranges were included. Multiple logistic regression was used to obtain adjusted prevalence odds ratios (OR) between asthma symptoms of the schoolchildren and rhinitis prevalence. The results were adjusted for parental smoking habits, maternal education level, cat and dog exposure, and obesity. A total of 21,420 valid questionnaires were finally obtained. Rhinitis was associated with a significant increase in the prevalence of asthma in both age groups. The highest OR were 11.375 for exercise induced asthma (EIA) for children with recent rhinoconjunctivitis and 9.807 for children with recent rhinitis in 6–7 years old group. The prevalence OR’s are higher in EIA and severe asthmatics. Rhinitis in children and adolescents is associated with a higher prevalence and severity of asthma.
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| 9. |
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| 10. |
- Cerecetto, H, et al.
(författare)
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Synthesis and herbicidal activity of N-oxide derivatives
- 2000
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Ingår i: Journal of Agricultural and Food Chemistry. - : American Chemical Society (ACS). - 0021-8561 .- 1520-5118. ; 48:7, s. 2995-3002
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Tidskriftsartikel (refereegranskat)abstract
- As part of an ongoing program on the chemistry and biological activity of N-oxide-containing molecules, a number of novel 1,2,5-oxadiazole N-oxide, benzo[1,2-c]1,2,5-oxadiazole N-oxide, and quinoxaline N,N'-dioxide derivatives were synthesized and evaluated for their herbicidal activity. Many of these compounds exhibited moderate to good herbicidal pre-emergence activity against Triticum aestivum. Dose-response studies were done on the more representative compounds (12, 20, and 26). The most active compound, butylcarbamoylbenzo[1,2-c]l,2,5-oxadiazole N-oxide, 26, displayed herbicidal activity at concentrations as low as 24 g/ha.
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| 11. |
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| 12. |
- Cunico, F. J., et al.
(författare)
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Studying the performance of conductive polymer films as textile electrodes for electrical bioimpedance measurements
- 2013
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Ingår i: XV International Conference on Electrical Bio-Impedance (ICEBI) & XIV Conference on Electrical Impedance Tomography (EIT). - : IOP Publishing. ; , s. 012027-
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Konferensbidrag (refereegranskat)abstract
- With the goal of finding novel biocompatible materials suitable to replace silver in the manufacturing of textile electrodes for medical applications of electrical bioimpedance spectroscopy, three different polymeric materials have been investigated. Films have been prepared from different polymeric materials and custom bracelets have been confectioned with them. Tetrapolar total right side electrical bioimpedance spectroscopy (EBIS) measurements have been performed with polymer and with standard gel electrodes. The performance of the polymer films was compared against the performance of the gel electrodes. The results indicated that only the polypropylene 1380 could produce EBIS measurements but remarkably tainted with high frequency artefacts. The influence of the electrode mismatch, stray capacitances and large electrode polarization impedance are unclear and they need to be clarified with further studies. If sensorized garments could be made with such biocompatible polymeric materials the burden of considering textrodes class III devices could be avoided.
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| 13. |
- Davies, Melvyn B, et al.
(författare)
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The MODEST questions: Challenges and future directions in stellar cluster research
- 2006
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Ingår i: New Astronomy. - : Elsevier BV. - 1384-1092 .- 1384-1076. ; 12:3, s. 201-214
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Forskningsöversikt (refereegranskat)abstract
- We present a review of some of the current major challenges in stellar cluster research, including young clusters, globular clusters, and galactic nuclei. Topics considered include: primordial mass segregation and runaway mergers, expulsion of gas from clusters, the production of stellar exotica seen in some clusters (e.g., blue stragglers and extreme horizontal-branch stars), binary populations within clusters, the black-hole population within stellar clusters, the final parsec problem, stellar dynamics around a massive black hole, and stellar collisions. The Modest Questions posed here are the outcome of discussions which took place at the Modest-6A workshop held in Lund, Sweden, in December, 2005. Modest-6A was organised as part of the activities of the Modest Collaboration (see www.manybody.org for further details).
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| 14. |
- DING, Yunhong, et al.
(författare)
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Linear all-optical signal processing using silicon micro-ring resonators
- 2016
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Ingår i: Frontiers of Optoelectronics. - : Springer Science and Business Media LLC. - 2095-2767 .- 2095-2759. ; 9:3, s. 362-376
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Forskningsöversikt (refereegranskat)abstract
- Silicon micro-ring resonators (MRRs) are compact and versatile devices whose periodic frequency response can be exploited for a wide range of applications. In this paper, we review our recent work on linear all-optical signal processing applications using silicon MRRs as passive filters. We focus on applications such as modulation format conversion, differential phase-shift keying (DPSK) demodulation, modulation speed enhancement of directly modulated lasers (DMLs), and monocycle pulse generation. The possibility to implement polarization diversity circuits, which reduce the polarization dependence of standard silicon MRRs, is illustrated on the particular example of DPSK demodulation.
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| 15. |
- Ferreira, J., et al.
(författare)
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Portable bioimpedance monitor evaluation for continuous impedance measurements : Towards wearable plethysmography applications
- 2013
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Ingår i: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. - 9781457702167 ; 2013, s. 559-62
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Konferensbidrag (refereegranskat)abstract
- Personalised Health Systems (PHS) that could benefit the life quality of the patients as well as decreasing the health care costs for society among other factors are arisen. The purpose of this paper is to study the capabilities of the System-on-Chip Impedance Network Analyser AD5933 performing high speed single frequency continuous bioimpedance measurements. From a theoretical analysis, the minimum continuous impedance estimation time was determined, and the AD5933 with a custom 4-Electrode Analog Front-End (AFE) was used to experimentally determine the maximum continuous impedance estimation frequency as well as the system impedance estimation error when measuring a 2R1C electrical circuit model. Transthoracic Electrical Bioimpedance (TEB) measurements in a healthy subject were obtained using 3M gel electrodes in a tetrapolar lateral spot electrode configuration. The obtained TEB raw signal was filtered in MATLAB to obtain the respiration and cardiogenic signals, and from the cardiogenic signal the impedance derivative signal (dZ/dt) was also calculated. The results have shown that the maximum continuous impedance estimation rate was approximately 550 measurements per second with a magnitude estimation error below 1% on 2R1C-parallel bridge measurements. The displayed respiration and cardiac signals exhibited good performance, and they could be used to obtain valuable information in some plethysmography monitoring applications. The obtained results suggest that the AD5933-based monitor could be used for the implementation of a portable and wearable Bioimpedance plethysmograph that could be used in applications such as Impedance Cardiography. These results combined with the research done in functional garments and textile electrodes might enable the implementation of PHS applications in a relatively short time from now.
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| 16. |
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| 17. |
- Munoz-Gama, Jorge, et al.
(författare)
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Process mining for healthcare : Characteristics and challenges
- 2022
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Ingår i: Journal of Biomedical Informatics. - : Elsevier BV. - 1532-0464 .- 1532-0480. ; 127
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Tidskriftsartikel (refereegranskat)abstract
- Process mining techniques can be used to analyse business processes using the data logged during their execution. These techniques are leveraged in a wide range of domains, including healthcare, where it focuses mainly on the analysis of diagnostic, treatment, and organisational processes. Despite the huge amount of data generated in hospitals by staff and machinery involved in healthcare processes, there is no evidence of a systematic uptake of process mining beyond targeted case studies in a research context. When developing and using process mining in healthcare, distinguishing characteristics of healthcare processes such as their variability and patient-centred focus require targeted attention. Against this background, the Process-Oriented Data Science in Healthcare Alliance has been established to propagate the research and application of techniques targeting the data-driven improvement of healthcare processes. This paper, an initiative of the alliance, presents the distinguishing characteristics of the healthcare domain that need to be considered to successfully use process mining, as well as open challenges that need to be addressed by the community in the future.
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| 18. |
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| 19. |
- Seoane Martínez, Fernando, et al.
(författare)
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The Challenge of the Skin-Electrode Contact in Textile-enabled Electrical Bioimpedance Measurements for Personalized Healthcare Monitoring Applications
- 2011
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Ingår i: Biomedical Engineering, Trends in Materials Science. - : InTech. - 9789533075136
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- Textile technology has gone through a remarkable development in the field of Smart Textiles and more specifically in the area of conductive fabrics and yarns. Important research efforts have been done worldwide and especially in Europe, where the EUcommission has supported several research projects in the near past e.g. BIOTEX IST-2004- 016789, CONTEXT IST- 2004-027291 and MyHeart IST-2002-507816. As a result of such worldwide R&D efforts, textile sensors and electrodes are currently available commercially. Nowadays there are even consumer products with textile sensing technology for heart rate monitoring integrated in the apparel e.g. Adistar Fusion T-shirt from Adidas or the Numetrex’s Cardio shirt. Since one of the main areas of focus where R&D efforts have been concentrated is Personalized Healthcare Monitoring (PHM) and the fact that most of the efforts developing textile sensors have been focused on developing electrodes for biopotential signals recording, it is natural that the main targeted application has been the acquisition of electrical biopotentials and especially monitoring the ElectroCardioGraphic activity, but also other types of textile sensors have been investigated e.g. textile stretching sensor (Mattmann et al., 2008). Nowadays textile-enable stretch sensors are available commercially like the one manufactured by Merlin Systems. While the application of this type of sensor aims at other applications than biopotential recordings, an important area of application of stretch sensors still is PHM and fitness. This type of sensors can be used for respiration monitoring or plethysmography applications.
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| 20. |
- Simic, M., et al.
(författare)
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Parameter Estimation of the Single-Dispersion Fractional Cole-Impedance Model With the Embedded Hardware
- 2023
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Ingår i: IEEE Sensors Journal. - : Institute of Electrical and Electronics Engineers (IEEE). - 1530-437X .- 1558-1748. ; 23:12, s. 12978-12987
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Tidskriftsartikel (refereegranskat)abstract
- Bioimpedance modeling with equivalent electrical circuits has an important role in various biomedical applications, as it facilitates understanding of underlying physical and electrochemical processes in applications such as body composition measurements and assessment of clinical conditions. However, the estimation of model parameter values is not a straightforward task, especially when complex circuits with fractional-order components [e.g., constant phase elements (CPEs)] are used. In this article, we propose a low-complexity method for parameter estimation of the Cole-impedance model suitable for low-cost embedded hardware (e.g., 8-bit microcontrollers). Our approach uses only the measured real and imaginary impedance, without any specific software package/toolbox, or initial values provided by the user. The proposed method was validated with synthetic (noiseless and noisy) data and experimental right-side, hand-to-foot bioimpedance data from a healthy adult participant. Moreover, the proposed method was compared in terms of accuracy with the recently published relevant work and commercial Electrical Impedance Spectroscopy software (Bioimp 2.3.4). The performance evaluation in terms of complexity (suitable for deployment for the microcontroller-based platform with 256 kB of RAM and 16 MHz clock speed), execution time (18 s for the dataset with 256 points), and cost (< 25) confirms the proposed method in regards to reliable bioimpedance processing using embedded hardware.
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| 21. |
- Stein, Robert, et al.
(författare)
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Neutrino follow-up with the Zwicky transient facility : results from the first 24 campaigns
- 2023
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Ingår i: Monthly notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 521:4, s. 5046-5063
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Tidskriftsartikel (refereegranskat)abstract
- The Zwicky Transient Facility (ZTF) performs a systematic neutrino follow-up programme, searching for optical counterparts to high-energy neutrinos with dedicated Target-of-Opportunity (ToO) observations. Since first light in March 2018, ZTF has taken prompt observations for 24 high-quality neutrino alerts from the IceCube Neutrino Observatory, with a median latency of 12.2 h from initial neutrino detection. From two of these campaigns, we have already reported tidal disruption event (TDE) AT 2019dsg and likely TDE AT 2019fdr as probable counterparts, suggesting that TDEs contribute >7.8 per cent of the astrophysical neutrino flux. We here present the full results of our programme through to December 2021. No additional candidate neutrino sources were identified by our programme, allowing us to place the first constraints on the underlying optical luminosity function of astrophysical neutrino sources. Transients with optical absolutes magnitudes brighter that -21 can contribute no more than 87 per cent of the total, while transients brighter than -22 can contribute no more than 58 per cent of the total, neglecting the effect of extinction and assuming they follow the star formation rate. These are the first observational constraints on the neutrino emission of bright populations such as superluminous supernovae. None of the neutrinos were coincident with bright optical AGN flares comparable to that observed for TXS 0506+056/IC170922A, with such optical blazar flares producing no more than 26 per cent of the total neutrino flux. We highlight the outlook for electromagnetic neutrino follow-up programmes, including the expected potential for the Rubin Observatory.
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| 22. |
- Tipsuwannakul, Ekawit, 1982, et al.
(författare)
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0.87 Tbit/s 160 Gbaud dual-polarization D8PSK OTDM transmission over 110 km
- 2010
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Ingår i: ECOC'10, European Conference on Optical Communication. - 9781424485369 ; 1-2, s. W.6.C.4-
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Konferensbidrag (refereegranskat)abstract
- The feasibility of transmitting 0.87 Tbit/s dual polarization D8PSK-OTDM over 110 km is, for the first time, demonstrated along with 0.44 Tbit/s single polarization D8PSK-OTDM over 220 km in conventional 55-km span SMF+DCF link. ©2010 IEEE.
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