| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
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| 3. |
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| 4. |
- Zhang, Yaoxin, et al.
(författare)
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Could social robots facilitate children with autism spectrum disorders in learning distrust and deception?
- 2019
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Ingår i: Computers in Human Behavior. - : Elsevier BV. - 0747-5632. ; 98, s. 140-149
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Tidskriftsartikel (refereegranskat)abstract
- Social robots have been increasingly involved in our daily lives and provide a new environment for children's growth. The current study aimed to examine how children with and without Autism Spectrum Disorders (ASD)learned complex social rules from a social robot through distrust and deception games. Twenty children with ASD between the ages of 5–8 and 20 typically-developing (TD)peers whose age and IQ were matched participated in distrust and deception tasks along with an interview about their perception of the human-likeness of the robot. The results demonstrated that: 1)children with ASD were slower to learn to and less likely to distrust and deceive a social robot than TD children and 2)children with ASD who perceived the robot to appear more human-like had more difficulty in learning to distrust the robot. Besides, by comparing to a previous study the results showed that children with ASD appeared to have more difficulty in learning to distrust a human compared to a robot, particularly in the early phase of learning. Overall, our study verified that social robots could facilitate children with ASD's learning of some social rules and showed that children's perception of the robot plays an important role in their social learning, which provides insights on robot design and its clinical applications in ASD intervention.
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| 5. |
- Ahlberg, Patrik, et al.
(författare)
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A two-in-one process for reliable graphene transistors processed with photolithography
- 2015
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Ingår i: Applied Physics Letters. - : AIP Publishing. - 0003-6951 .- 1077-3118. ; 107:20
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Tidskriftsartikel (refereegranskat)abstract
- Research on graphene field-effect transistors (GFETs) has mainly relied on devices fabricated using electron-beam lithography for pattern generation, a method that has known problems with polymer contaminants. GFETs fabricated via photo-lithography suffer even worse from other chemical contaminations, which may lead to strong unintentional doping of the graphene. In this letter, we report on a scalable fabrication process for reliable GFETs based on ordinary photo-lithography by eliminating the aforementioned issues. The key to making this GFET processing compatible with silicon technology lies in a two-in-one process where a gate dielectric is deposited by means of atomic layer deposition. During this deposition step, contaminants, likely unintentionally introduced during the graphene transfer and patterning, are effectively removed. The resulting GFETs exhibit current-voltage characteristics representative to that of intrinsic non-doped graphene. Fundamental aspects pertaining to the surface engineering employed in this work are investigated in the light of chemical analysis in combination with electrical characterization.
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| 6. |
- Ariyawansa, Hiran A., et al.
(författare)
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Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
- 2015
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Ingår i: Fungal diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 75, s. 27-274
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Tidskriftsartikel (refereegranskat)abstract
- This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range. The new families, Ascocylindricaceae, Caryosporaceae and Wicklowiaceae (Ascomycota) are introduced based on their distinct lineages and unique morphology. The new Dothideomycete genera Pseudomassariosphaeria (Amniculicolaceae), Heracleicola, Neodidymella and P s e u d o m i c ros p h a e r i o p s i s ( D id y m e l l a c e a e ) , P s e u d o p i t h o m y c e s ( D i d y m o s p h a e r i a c e a e ) , Brunneoclavispora, Neolophiostoma and Sulcosporium (Halotthiaceae), Lophiohelichrysum (Lophiostomataceae), G a l l i i c o l a , Popul o c re s c e n t i a a nd Va g i c o l a (Phaeosphaeriaceae), Ascocylindrica (Ascocylindricaceae), E l o n g a t o p e d i c e l l a t a ( R o u s s o e l l a c e a e ) , Pseudoasteromassaria (Latoruaceae) and Pseudomonodictys (Macrodiplodiopsidaceae) are introduced. The newly described species of Dothideomycetes (Ascomycota) are Pseudomassariosphaeria bromicola (Amniculicolaceae), Flammeascoma lignicola (Anteagloniaceae), Ascocylindrica marina (Ascocylindricaceae) , Lembosia xyliae (Asterinaceae), Diplodia crataegicola and Diplodia galiicola ( B o t r yosphae r i a cea e ) , Caryospor a aquat i c a (Caryosporaceae), Heracleicola premilcurensis and Neodi dymell a thai landi cum (Didymellaceae) , Pseudopithomyces palmicola (Didymosphaeriaceae), Floricola viticola (Floricolaceae), Brunneoclavispora bambusae, Neolophiostoma pigmentatum and Sulcosporium thailandica (Halotthiaceae), Pseudoasteromassaria fagi (Latoruaceae), Keissleriella dactylidicola (Lentitheciaceae), Lophiohelichrysum helichrysi (Lophiostomataceae), Aquasubmersa japonica (Lophiotremataceae) , Pseudomonodictys tectonae (Macrodiplodiopsidaceae), Microthyrium buxicola and Tumidispora shoreae (Microthyriaceae), Alloleptosphaeria clematidis, Allophaeosphaer i a c y t i s i , Allophaeosphae r i a subcylindrospora, Dematiopleospora luzulae, Entodesmium artemisiae, Galiicola pseudophaeosphaeria, Loratospora(Basidiomycota) are introduced together with a new genus Neoantrodiella (Neoantrodiellaceae), here based on both morphology coupled with molecular data. In the class Agaricomycetes, Agaricus pseudolangei, Agaricus haematinus, Agaricus atrodiscus and Agaricus exilissimus (Agaricaceae) , Amanita m e l l e i a l b a , Amanita pseudosychnopyramis and Amanita subparvipantherina (Amanitaceae), Entoloma calabrum, Cora barbulata, Dictyonema gomezianum and Inocybe granulosa (Inocybaceae), Xerocomellus sarnarii (Boletaceae), Cantharellus eucalyptorum, Cantharellus nigrescens, Cantharellus tricolor and Cantharellus variabilicolor (Cantharellaceae), Cortinarius alboamarescens, Cortinarius brunneoalbus, Cortinarius ochroamarus, Cortinarius putorius and Cortinarius seidlii (Cortinariaceae), Hymenochaete micropora and Hymenochaete subporioides (Hymenochaetaceae), Xylodon ramicida (Schizoporaceae), Colospora andalasii (Polyporaceae), Russula guangxiensis and Russula hakkae (Russulaceae), Tremella dirinariae, Tremella graphidis and Tremella pyrenulae (Tremellaceae) are introduced. Four new combinations Neoantrodiella gypsea, Neoantrodiella thujae (Neoantrodiellaceae), Punctulariopsis cremeoalbida, Punctulariopsis efibulata (Punctulariaceae) are also introduced here for the division Basidiomycota. Furthermore Absidia caatinguensis, Absidia koreana and Gongronella koreana (Cunninghamellaceae), Mortierella pisiformis and Mortierella formosana (Mortierellaceae) are newly introduced in the Zygomycota, while Neocallimastix cameroonii and Piromyces irregularis (Neocallimastigaceae) ar e i n t roduced i n the Neocallimastigomycota. Reference specimens or changes in classification and notes are provided for Alternaria ethzedia, Cucurbitaria ephedricola, Austropleospora, Austropleospora archidendri, Byssosphaeria rhodomphala, Lophiostoma caulium, Pseudopithomyces maydicus, Massariosphaeria, Neomassariosphaeria and Pestalotiopsis montellica.
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| 7. |
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| 8. |
- Chapuis, Julien, et al.
(författare)
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Genome-wide, high-content siRNA screening identifies the Alzheimer’s genetic risk factor FERMT2 as a major modulator of APP metabolism
- 2017
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Ingår i: Acta Neuropathologica. - : Springer Science and Business Media LLC. - 0001-6322 .- 1432-0533. ; 133:6, s. 955-966
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Tidskriftsartikel (refereegranskat)abstract
- Genome-wide association studies (GWASs) have identified 19 susceptibility loci for Alzheimer’s disease (AD). However, understanding how these genes are involved in the pathophysiology of AD is one of the main challenges of the “post-GWAS” era. At least 123 genes are located within the 19 susceptibility loci; hence, a conventional approach (studying the genes one by one) would not be time- and cost-effective. We therefore developed a genome-wide, high-content siRNA screening approach and used it to assess the functional impact of gene under-expression on APP metabolism. We found that 832 genes modulated APP metabolism. Eight of these genes were located within AD susceptibility loci. Only FERMT2 (a β3-integrin co-activator) was also significantly associated with a variation in cerebrospinal fluid Aβ peptide levels in 2886 AD cases. Lastly, we showed that the under-expression of FERMT2 increases Aβ peptide production by raising levels of mature APP at the cell surface and facilitating its recycling. Taken as a whole, our data suggest that FERMT2 modulates the AD risk by regulating APP metabolism and Aβ peptide production.
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| 9. |
- Greening, Chris, et al.
(författare)
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Minimal and hybrid hydrogenases are active from archaea
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Ingår i: Cell. - 1097-4172. ; 187
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Tidskriftsartikel (refereegranskat)abstract
- Microbial hydrogen (H 2) cycling underpins the diversity and functionality of diverse anoxic ecosystems. Among the three evolutionarily distinct hydrogenase superfamilies responsible, [FeFe] hydrogenases were thought to be restricted to bacteria and eukaryotes. Here, we show that anaerobic archaea encode diverse, active, and ancient lineages of [FeFe] hydrogenases through combining analysis of existing and new genomes with extensive biochemical experiments. [FeFe] hydrogenases are encoded by genomes of nine archaeal phyla and expressed by H 2-producing Asgard archaeon cultures. We report an ultraminimal hydrogenase in DPANN archaea that binds the catalytic H-cluster and produces H 2. Moreover, we identify and characterize remarkable hybrid complexes formed through the fusion of [FeFe] and [NiFe] hydrogenases in ten other archaeal orders. Phylogenetic analysis and structural modeling suggest a deep evolutionary history of hybrid hydrogenases. These findings reveal new metabolic adaptations of archaea, streamlined H 2 catalysts for biotechnological development, and a surprisingly intertwined evolutionary history between the two major H 2-metabolizing enzymes.
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| 10. |
- Han, Guilin, et al.
(författare)
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Carbon-nitrogen isotope coupling of soil organic matter in a karst region under land use change, Southwest China
- 2020
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Ingår i: Agriculture, Ecosystems & Environment. - : Elsevier. - 0167-8809 .- 1873-2305. ; 301, s. 1-11
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Tidskriftsartikel (refereegranskat)abstract
- The soil stable carbon (C) and nitrogen (N) isotopes are widely used to indicate C3/C4 vegetation history, N sources and transformation processes, respectively. However, land use change, particularly converting forest into farm land, alters soil organic matter (SOM) sources and processes in soils, resulting in a hard understanding of soil C and N fate. In the present study, soil organic carbon (SOC) and soil organic nitrogen (SON) contents, and their stable isotope compositions (δ13C and δ15N) were determined in the five soil profiles under land use change (i.e., conversion of native forest land into shrub land, grass land, maize field, and paddy land) in Lobo county, Guizhou province, Southwest China. A coupling of 13C and 15N isotope in SOM under land use change was verified whether it could provide more accurate indications of sources and transformation processes.The SOC and SON contents of native forest land at the 0∼20 cm depth were significantly larger than these under other transformed lands. The SOC and SON contents decreased exponentially with increasing soil depth under all land use types, and showed opposite trends with soil pH. The C/N ratios of SOM in the soils under undisturbed native forest decreased from 10 to 7 with increasing soil depth, while an irregular fluctuation along soil profile was shown in other transformed lands. Similarly to the most study in the soils under C3 forest, the δ13C and δ15N values of SOM in the soils under native forest at the 0∼50 cm depth increased with increasing soil depth, with the range of −27.7‰∼−25.7‰ and 6.5‰∼10.0‰, respectively. While decreasing trends of them in the soils below 50 cm depth were attributed to the mixing of 13C and 15N-depleted organic matters from bedrocks. However, the δ13C and δ15N values of SOM along the soil profiles under other transformed lands were intensively irregularly fluctuated between −29.1‰ and −19.0‰, 1.2‰ and 7.9‰, respectively. The single δ13C and δ15N signals in the soil profiles of transformed lands indeed revealed the alterations of historical C3/C4 composition and N transformation processes after land use change, but these indications were not specific. The result of the coupling of 13C and 15N isotope under native forest land reveals a positive relationship between them, which associated with full plant-absorption against 15N-depleted inorganic nitrogen derived from SOM mineralization. This study suggests that the coupling of CN isotope fractionation more likely occurs in the C3 forest ecosystem with high N utilization efficiency. However, the replacement of native forest by farm land or grass land will reduce soil N utilization efficiency.
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| 11. |
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| 12. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 13. |
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| 14. |
- Majee, Subimal, et al.
(författare)
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Printable graphene ink produced by liquid-phaseshear exfoliation of graphite
- 2015
-
Konferensbidrag (refereegranskat)abstract
- Electrical interconnections are one of the main challenges in the printed electronics, to connect different functional units of anelectronic device. With the progressive advancement of large area and low cost printed electronic devices, the requirement forreliable interconnections with lower power consumption fabricated at low temperature is necessary. The conventional copperbased interconnections suffer severe problems in terms of cost efficiency when they are processed with photolithographytechnique. Therefore, there is being a copious amount of re-search to find alternative interconnect materials to overcome suchproblems. Recently, carbon nanotubes (Kordás et al. 2006), silver nanowires (Liu et al. 2011) and graphene (Huang et al. 2011)are being developed as the alter-native interconnection materials. Among them, graphene has high potential for suchapplication due to its remarkable inherent properties: high electrical conductivity, high transparency, mechanical flexibility,higher tensile strength, higher thermal conductivity, extremely high surface area and higher electron mobility. In spite of thoseexcellent properties, graphene has some shortcomings which are needed to be solved. Stacking of graphene sheets issues largeinterface resistance, which is responsible for poor electrical performance. Printing of graphene proved to be a promisingapproach since it combines the attractive features of graphene and the cost effective printing methods (ink-jet printing, nozzleprinting, spray printing) which enable additive patterning, direct writing, scalability to large area manufacturing. In order tofacilitate the printing process, the graphene solution needs to be highly stable, uniform and should contain smaller sheet sizes (~1μm). In this work we have proposed a cost-effective approach for large-scale production of printable stable graphene solutionto be used for the printing of inter-connects. The liquid-phase shear exfoliation (Paton, et al. 2014) of graphite allowed us toprepare large-scale production of solution with exfoliated graphene sheets. The process is scalable and requires shorterprocessing time compared to the other existing exfoliation methods. We have exfoliated graphene sheets from graphite flakesusing environmental-friendly solvent, ethanol, and a stabilizing polymer, ethyl cellulose (EC). The ethyl cellulose was used inorder to encapsulate graphene sheets in the solution and to avoid any reversible process (Secor, et al. 2013). The graphenebased solution prepared after several optimizations of the shear-mixing process leads to a stable solution for more than threemonths without any sedimentation. The microscopic studies of the films prepared from the spin-coating of the solution showedgraphene sheets without any agglomeration and with sheet sizes < 1μm. The process allowed us to prepare a cost-effectivegraphene solution which can be used for producing electrical interconnections by various printing methods.
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| 15. |
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| 16. |
- Majee, Subimal, 1984-, et al.
(författare)
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Production of transparent and conductive stable graphene ink for inkjet printing method
- 2015
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Konferensbidrag (refereegranskat)abstract
- Electrical interconnections are one of the main challenges in the printed electronics, to connect different functional units of an electronic device. With the progressive advancement of large area and low cost printed electronic devices on polymeric and paper substrates, the requirement for reliable interconnections with lower power consumption fabricated at low temperature is necessary. The conventional copper-based interconnections suffer severe problems in terms of cost efficiency when they are processed with photolithography technique. To replace the conventional metallic interconnections we have proposed printed interconnects with graphene inks. This is mainly motivated by two reasons. First, printing is a low-cost patterning approach which is performed at ordinary ambient condition. Printing of graphene proved to be a promising since it combines the attractive features of graphene and the cost effective printing methods (ink-jet printing, nozzle printing, spray printing) which enable additive patterning, direct writing, scalability to large area manufacturing. In order to facilitate the inkjet printing process, the graphene solution needs to be highly stable, uniform and should contain smaller sheet sizes (~ 1 micro meter) because of the limitation of the nozzle size of inkjet printing machine. In this work we have proposed a cost-effective approach for large-scale production of printable stable graphene suspension by liquid-phase shear exfoliation of graphite for printed electronics application. The process is scalable and requires shorter processing time compared to the other existing exfoliation methods. Graphene sheets have been exfoliated from graphite flakes in a solvent, cyclohexanone with ethyl cellulose as stabilizer. The graphene based solution prepared after several optimizations leads to a stable ink for more than six months without any sedimentation. The initial studies confirmed the production of graphene films with average sheet thickness of 10 to 20 nm and without any agglomeration with sheet sizes less than 1 micro meter. The rheological properties, such as, viscosity, of the produced graphene ink has been carefully tuned in order for successful inkjet printing process. Highly conductive and transparent (~70 % in the visible region) interconnections have been developed after several inkjet printing steps.
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| 17. |
- Majee, Subimal, et al.
(författare)
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Scalable inkjet printing of shear-exfoliated graphene transparent conductive films
- 2016
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Ingår i: Carbon. - : Elsevier BV. - 0008-6223 .- 1873-3891. ; 102, s. 51-57
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Tidskriftsartikel (refereegranskat)abstract
- In this study, we demonstrate scalable and efficient inkjet printing of graphene flexible transparent conducting films (TCFs). The highly concentrated and stable graphene ink (3.2 mg/mL) that is dominated by 4-layer graphene flakes is achieved by means of shear exfoliation process. The printed graphene TCFs with DC conductivity of ∼4 × 104 S/m (sheet resistance 260 Ω/□ coupled with optical transparency of 86%) without intentional doping are readily obtained. Excellent flexibility and air stability of the printed graphene TCFs allow their potential applications in different flexible opto-electronics devices. Systematic investigation of the inkjet printing of graphene and the annealing effect on the graphene TCFs is presented.
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| 18. |
- Miao, Fengjuan, et al.
(författare)
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Inkjet printing of electrochemically-exfoliated graphene nano-platelets
- 2016
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 220, s. 318-322
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Tidskriftsartikel (refereegranskat)abstract
- In this study, we report on a facile method of inkjet printing of graphene nano-platelets (GNPs). The GNPs are exfoliated from graphite by means of an electrochemical process in an inorganic salt based electrolyte. The electrochemically exfoliated GNPs with oxygen-bearing functional groups exhibit spectroscopic features similar to those of reduced graphene oxides. As a result, ink formulation with such GNPs for inkjet printing readily accomplishes without using stabilizer and various conductive objects are easily fabricated on different substrates by inkjet printing. The as-printed films of the electrochemically exfoliated GNPs deliver an electrical conductivity of 44 S/m, a typical value for as-printed pristine GNP films in the literature. A simple thermal treatment results in an improved DC conductivity by two orders of magnitude to ~2.5 × 103 S/m.
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| 19. |
- Ning, Yuping, et al.
(författare)
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Optical simulation and preparation of novel Mo/ZrSiN/ZrSiON/SiO2 solar selective absorbing coating
- 2017
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Ingår i: Solar Energy Materials and Solar Cells. - : Elsevier BV. - 0927-0248 .- 1879-3398. ; 167, s. 178-183
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Tidskriftsartikel (refereegranskat)abstract
- A novel Mo/ZrSiN/ZrSiON/SiO2 solar selective absorbing coating has been investigated, which was prepared by magnetron sputtering on stainless steel substrate. A high solar absorptance of 0.94 and a low thermal emittance of 0.06 at 25 degrees C were achieved. By proportionally decreasing the thicknesses of the ZrSiN, ZrSiON and SiO2 layers, the thermal emittance at 500 degrees C was decreased significantly from 0.19 to 0.12 (Delta epsilon = 0.07) while keeping the solar absorptance unchanged. The coating also showed high thermal stability at 500 degrees C in vacuum, implying that it is a promising candidate for high temperature concentrated solar power (CSP) applications.
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| 20. |
- Palmer, Nicholette D, et al.
(författare)
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A genome-wide association search for type 2 diabetes genes in African Americans.
- 2012
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Ingår i: PloS one. - San Francisco : Public Library of Science (PLoS). - 1932-6203. ; 7:1, s. e29202-
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Tidskriftsartikel (refereegranskat)abstract
- African Americans are disproportionately affected by type 2 diabetes (T2DM) yet few studies have examined T2DM using genome-wide association approaches in this ethnicity. The aim of this study was to identify genes associated with T2DM in the African American population. We performed a Genome Wide Association Study (GWAS) using the Affymetrix 6.0 array in 965 African-American cases with T2DM and end-stage renal disease (T2DM-ESRD) and 1029 population-based controls. The most significant SNPs (n = 550 independent loci) were genotyped in a replication cohort and 122 SNPs (n = 98 independent loci) were further tested through genotyping three additional validation cohorts followed by meta-analysis in all five cohorts totaling 3,132 cases and 3,317 controls. Twelve SNPs had evidence of association in the GWAS (P<0.0071), were directionally consistent in the Replication cohort and were associated with T2DM in subjects without nephropathy (P<0.05). Meta-analysis in all cases and controls revealed a single SNP reaching genome-wide significance (P<2.5×10(-8)). SNP rs7560163 (P = 7.0×10(-9), OR (95% CI) = 0.75 (0.67-0.84)) is located intergenically between RND3 and RBM43. Four additional loci (rs7542900, rs4659485, rs2722769 and rs7107217) were associated with T2DM (P<0.05) and reached more nominal levels of significance (P<2.5×10(-5)) in the overall analysis and may represent novel loci that contribute to T2DM. We have identified novel T2DM-susceptibility variants in the African-American population. Notably, T2DM risk was associated with the major allele and implies an interesting genetic architecture in this population. These results suggest that multiple loci underlie T2DM susceptibility in the African-American population and that these loci are distinct from those identified in other ethnic populations.
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| 21. |
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| 22. |
- Ruan, Ting, et al.
(författare)
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Concentrations and composition profiles of benzotriazole UV stabilizers in municipal sewage sludge in China
- 2012
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Ingår i: Environmental Science and Technology. - : American Chemical Society (ACS). - 0013-936X .- 1520-5851. ; 46:4, s. 2071-2079
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Tidskriftsartikel (refereegranskat)abstract
- The environmental contamination and fate of benzotriazole UV stabilizers (BZTs) have received increasing attention due to their large production volume and wide usage in various consumer and industrial products. In the present work, 60 municipal sewage sludge samples from wastewater treatment plants (WWTPs) in 33 cities in China were collected to investigate the occurrence and distribution of 9 frequently used BZTs. The most dominant analogue was 2-[3,5-bis(1-methyl-1-phenylethyl)-2-hydroxyphenyl]benzotriazole (UV-234) at a median concentration of 116 ng/g (dry weight) and accounted on average for 27.2% of total BZTs. The abundance was successively followed by 2-(2-hydroxy-5-tert-octylphenyl)benzotriazole (UV-329, average 24.3%), 2-(2-hydroxy-3-tert-butyl-5-methylphenyl)-5-chlorobenzotriazole (UV-326, average 22.2%), 2-(3,5-di-tert-amyl-2-hydroxyphenyl)benzotriazole (UV-328, average 17.7%), and 2-(2-hydroxy-5-methylphenyl)benzotriazole (UV-P, average 6.6%), with median concentrations of 66.8, 67.8, 57.3, and 20.6 ng/g, respectively. 5-Chloro-2-(3,5-di-tert-butyl-2-hydroxyphenyl)benzotriazole (UV-327) and 2-(3-sec-butyl-5-tert-butyl-2-hydroxyphenyl)benzotriazole (UV-350) had low detection frequency, while 2-(3,5-di-tert-butyl-2-hydroxyphenyl)benzotriazole (UV-320) and 2-(5-tert-butyl-2-hydroxyphenyl)benzotriazole (UV-PS) were not detectable in any sample. To our knowledge, this is the first study reporting the occurrence of UV-234, UV-329, and UV-350 in sewage sludge in China. Significant correlations were found among the BZT concentrations and also with a WWTP characteristic (daily treatment volume). Furthermore, results from degradation prediction and multimedia fate simulation based on a quantitative structure-property relationship (QSPR) model at screening level also implied that the commercial BZT chemicals and their plausible transformation products might be persistent in the environment.
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| 23. |
- Saxena, Richa, et al.
(författare)
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Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge
- 2010
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 42:2, s. 142-148
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Tidskriftsartikel (refereegranskat)abstract
- Glucose levels 2 h after an oral glucose challenge are a clinical measure of glucose tolerance used in the diagnosis of type 2 diabetes. We report a meta-analysis of nine genome-wide association studies (n = 15,234 nondiabetic individuals) and a follow-up of 29 independent loci (n = 6,958–30,620). We identify variants at the GIPR locus associated with 2-h glucose level (rs10423928, β (s.e.m.) = 0.09 (0.01) mmol/l per A allele, P = 2.0 × 10−15). The GIPR A-allele carriers also showed decreased insulin secretion (n = 22,492; insulinogenic index, P = 1.0 × 10−17; ratio of insulin to glucose area under the curve, P = 1.3 × 10−16) and diminished incretin effect (n = 804; P = 4.3 × 10−4). We also identified variants at ADCY5 (rs2877716, P = 4.2 × 10−16), VPS13C (rs17271305, P = 4.1 × 10−8), GCKR (rs1260326, P = 7.1 × 10−11) and TCF7L2 (rs7903146, P = 4.2 × 10−10) associated with 2-h glucose. Of the three newly implicated loci (GIPR, ADCY5 and VPS13C), only ADCY5 was found to be associated with type 2 diabetes in collaborating studies (n = 35,869 cases, 89,798 controls, OR = 1.12, 95% CI 1.09–1.15, P = 4.8 × 10−18).
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| 24. |
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| 25. |
- Song, Dong Yan, et al.
(författare)
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α-Synuclein induces deficiency in clathrin-mediated endocytosis through inhibiting synaptojanin1 expression
- 2023
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Ingår i: Journal of Neurochemistry. - 0022-3042. ; 167:3, s. 461-484
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Tidskriftsartikel (refereegranskat)abstract
- Parkinson's disease (PD) is an age-related chronic neurological disorder, mainly characterized by the pathological feature of α-synuclein (α-syn) aggregation, with the exact disease pathogenesis unclear. During the onset and progression of PD, synaptic dysfunction, including dysregulation of axonal transport, impaired exocytosis, and endocytosis are identified as crucial events of PD pathogenesis. It has been reported that over-expression of α-syn impairs clathrin-mediated endocytosis (CME) in the synapses. However, the underlying mechanisms still needs to be explored. In this study, we investigated the molecular events underlying the synaptic dysfunction caused by over-expression of wild-type human α-syn and its mutant form, involving series of proteins participating in CME. We found that excessive human α-syn causes impaired fission and uncoating of clathrin-coated vesicles during synaptic vesicle recycling, leading to reduced clustering of synaptic vesicles near the active zone and increased size of plasma membrane and number of endocytic intermediates. Furthermore, over-expressed human α-syn induced changes of CME-associated proteins, among which synaptojanin1 (SYNJ1) showed significant reduction in various brain regions. Over-expression of SYNJ1 in primary hippocampal neurons from α-syn transgenic mice recovered the synaptic vesicle density, clustering and endocytosis. Using fluorescence-conjugated transferrin, we demonstrated that SYNJ1 re-boosted the CME activity by restoring the phosphatidylinositol-4,5-bisphosphate homeostasis. Our data suggested that over-expression of α-syn disrupts synaptic function through interfering with vesicle recycling, which could be alleviated by re-availing of SYNJ1. Our study unrevealed a molecular mechanism of the synaptic dysfunction in PD pathogenesis and provided a potential therapeutic target for treating PD.
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| 26. |
- Song, Man, et al.
(författare)
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Efficient Gelation of Graphene Oxide Aqueous Dispersion Induced by Sonication-Promoted Leuckart Reaction
- 2018
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Ingår i: ChemNanoMat. - : John Wiley & Sons. - 2199-692X. ; 4:11, s. 1145-1152
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Tidskriftsartikel (refereegranskat)abstract
- Abstract Graphene oxide (GO) undergoes a rapid gelation process in the presence of ammonium hydroxide and formic acid at room temperature which is promoted by ultrasonication. Infrared and X-ray photoelectron spectroscopy proved partial reduction of GO and nitrogen incorporation, resulting from sonication-promoted Leuckart reactions at GO carbonyl groups. The amine groups produced via Leuckart reactions undergo further reactions that result in salt bridges with carboxylic groups and covalent cross-links, both of which contribute to the stabilization of the resulting hydrogel. The resultant GO hydrogel exhibits enhanced thermal stability.
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| 27. |
- Song, Man, 1988-
(författare)
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Graphene Based Inks for Printed Electronics
- 2019
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The outstanding properties of graphene make it attractive ink filler for conductive inks which plays an important role in printed electronics. This thesis focuses on the ink formulation based on graphene and graphene oxide (GO).Liquid phase exfoliation of graphite is employed to prepare graphene dispersions, i.e., shear- and electrochemical exfoliation. High concentration graphene dispersions with small size, few-layer graphene platelets are obtained by both methods. With the addition of ethyl cellulose stabilizer, shear-exfoliated graphene platelets in NMP were successfully inkjet printed on different substrates. The printed graphene film with electrical conductivity of ~3^104 S/m was obtained after annealing at 350 °C for one hour. Alternatively, the electrochemically exfoliated graphene nano-platelets were collected and redispersed in DMF to form inks. The printed film of conductivity ~2.5^103 S/m was obtained after annealing at 300 °C for one hour.Water based GO/Ag hybrid inks were developed for screen printing. When high concentration GO aqueous dispersion was mixed with reactive silver ink, the viscosity of the mixture increased instantly to above 1000 cP as a result of reactions between oxygen functional groups (OFGs) on GO sheets and ingredients in the reactive silver ink. When the screen printed lines with different GO:Ag ratios were annealed in air, the conductivity of the resultant reduced graphene oxide/silver nanoparticles (RGO/AgNPX) composites decreased as silver content increased. As oxygen enriched compounds in RGO/AgNPX composites were detected, we proposed that AgOx compounds were generated on the AgNPs surface, which raised the contact resistance between AgNPs and RGO flakes. To solve this problem, the printed patterns were instead annealed in reducing gas (Ar/H2 5%). The electrical conductivity ~2.0^104 S/m was then achieved.Furthermore, the reduction of GO using ammonium formate as reducing reagent was investigated. When applying a hydrothermal method, ammonium formate shows excellent reduction ability, surpassing the widely used reducing agent, L-ascorbic acid, under same condition. Elemental analysis shows the C/O ratio of RGO as high as ~11 and most OFGs were removed in the reduction process. Meanwhile, incorporated nitrogen atoms introduced active sites in resultant RGO, making it a promising electrocatalyst for oxygen reduction reaction.
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| 28. |
- Song, Man, et al.
(författare)
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Nitrogen-doped Reduced Graphene Oxide Hydrogel Achieved via a One-Step Hydrothermal Process
- 2019
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Ingår i: ChemNanoMat. - : WILEY-V C H VERLAG GMBH. - 2199-692X. ; 5:9, s. 1144-1151
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Tidskriftsartikel (refereegranskat)abstract
- We report an efficient one-step method to achieve highly reduced graphene oxide (rGO) hydrogel doped with nitrogen where the rGO sheets are interconnected forming a porous structure by means of hydrothermal process. During the synthesis, ammonium formate is used as reducing reagent and simultaneously as nitrogen supplier, which delivers nitrogen-doped rGO (NRGO) hydrogel that exhibits C/O atomic ratio as high as at ~11.1 and contains decent ~5.4 at.% nitrogen. As comparison, the reduction efficiency is only half of the value and no nitrogen doping can be obtained when L-ascorbic acid is used as reducing reagent. The resultant NRGO shows enhanced electrocatalytic ability for oxygen reduced reaction indicating its great potential of the one-step method for the catalyst and energy applications.
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| 29. |
- Song, Man, et al.
(författare)
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Screen Printed Conductive Composites with Reduced Graphene Oxide and Silver
- 2018
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Ingår i: 2018 IMAPS Nordic Conference on Microelectronics Packaging (NordPac). - 9789526815053 - 9781538680193 ; , s. 35-39
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Konferensbidrag (refereegranskat)abstract
- This work provides a method to fabricate conductive composites by screen printing of aqueous hybrid inks with graphene oxide (GO) and silver acetate as silver source. The formulation of the aqueous hybrid inks is realized by mixing highly concentrated GO solution and reactive silver solution, which readily results in a formation of viscous pastes. Composite films with four-probe structure were fabricated by means of blade coating, followed by annealing at 160 °C in air and subsequently at 600 °C in Ar/H 2 . While the reactive silver solution without GO can be completely reduced when annealed at 90 °C in air, resulting in elemental Ag films with resistivity close to the bulk value, no reduction occurs in the hybrid inks under the same annealing condition. Silver nanoparticles are formed from the hybrid inks at 160 °C and discretely distributed on the reduced GOs (rGOs), which shows a retardation effect of GO on the reduction of silver. Further annealing at 600 °C in Ar/H 2 leads to partial restoration of sp 2 lattice in the rGOs. The resistivity of the composite films increases as the silver content is increased, which is interpreted by using a percolation model with rGO networks.
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| 30. |
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| 31. |
- Wu, Yuntao, et al.
(författare)
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Climatic controls on stable carbon and nitrogen isotope compositions of temperate grasslands in northern China
- 2023
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Ingår i: Plant and Soil. - : Springer. - 0032-079X .- 1573-5036. ; 491, s. 133-144
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Tidskriftsartikel (refereegranskat)abstract
- Aims The natural abundances of stable carbon (C) and nitrogen (N) isotopes (delta C-13 and delta N-15) are extensively used to indicate the C and N biogeochemical cycles at large spatial scales. However, the spatial patterns of delta C-13 and delta N-15 in plant-soil systems of grasslands in northern China and their main driving factors across regional climatic gradient are still not well understood. Methods We measured plant and soil delta C-13 and delta N-15 compositions as well as their associated environmental factors across 2000 km climatic gradient (-0.2 to 9 degrees C; 152 to 502 mm) in grasslands of northern China. Results The soil delta C-13 and delta N-15 values in surface were lower than those in bottom for temperate typical steppe but had no significant differences for temperate meadow steppe and temperate desert steppe. Soil delta C-13 values declined with increasing soil organic carbon (SOC) but increased as mean annual temperature (MAT). These changes were attributed to the microbial decomposition rate. The delta N-15 values in soil and plant were negatively correlated with MAT and mean annual precipitation (MAP), which were mainly related to the low soil organic matter mineralization rate and the shift of dominant species from C-4 to C-3. Conclusions Our results indicate the spatial patterns and different influencing factors on delta C-13 and delta N-15 values along the climatic gradient in grasslands of northern China. The findings will provide scientific references for future research on the C and N biogeochemical cycles of temperate grasslands.
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| 32. |
- Zhang, Yaoxin, et al.
(författare)
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Theory of Robot Mind: False belief attribution to social robots in children with and without autism
- 2019
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Ingår i: Frontiers in Psychology. - : Frontiers Media SA. - 1664-1078. ; 10:JULY
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Tidskriftsartikel (refereegranskat)abstract
- This study aims to probe how children with and without Autism Spectrum Disorders (ASD) attribute false belief to a social robot and predict its action accordingly. Twenty 5- to 7-year-old children with ASD and 20 age- and IQ-matched typically-developing (TD) children participated in two false belief tasks adapted for robot settings (change-of-location task and the unexpected-contents task). The results showed that most TD children are capable of attributing false belief to the social robot, that is, they could infer higher-level mental states in robots, which extends our understanding in TD children's perception and cognition on social robots. Conversely, children with ASD still show difficulty in interpreting robots' mental states relative to their TD peers, similar as their impaired understanding of human's mind. This group difference in attributing false belief to social robots could not be explained by the different perception and categorization of the robot. Our study implies that although children with ASD appear to be highly attracted by social robots, they still have difficulty in understanding mental states when socially interacting with robots, which should be taken into consideration when designing the robot-based intervention approach targeting to improve social behaviors of ASD.
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| 33. |
- Zhao, Jie, et al.
(författare)
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Microstructure-tunable highly conductive graphene-metal composites achieved by inkjet printing and low temperature annealing
- 2018
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Ingår i: Journal of Micromechanics and Microengineering. - : IOP PUBLISHING LTD. - 0960-1317 .- 1361-6439. ; 28:3
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Tidskriftsartikel (refereegranskat)abstract
- We present a method for fabricating highly conductive graphene-silver composite films with a tunable microstructure achieved by means of an inkjet printing process and low temperature annealing. This is implemented by starting from an aqueous ink formulation using a reactive silver solution mixed with graphene nanoplatelets (GNPs), followed by inkjet printing deposition and annealing at 100 degrees C for silver formation. Due to the hydrophilic surfaces and the aid of a polymer stabilizer in an aqueous solution, the GNPs are uniformly covered with a silver layer. Simply by adjusting the content of GNPs in the inks, highly conductive GNP/Ag composites (> 106 S m(-1)), with their microstructure changed from a large-area porous network to a compact film, is formed. In addition, the printed composite films show superior quality on a variety of unconventional substrates compared to its counterpart without GNPs. The availability of composite films paves the way to the metallization in different printed devices, e.g. interconnects in printed circuits and electrodes in energy storage devices.
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| 34. |
- Zheng, Xiaodi, et al.
(författare)
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Extreme Copper Isotope Fractionation Driven by Redox Oscillation During Gleysols Weathering in Mun River Basin, Northeast Thailand
- 2023
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Ingår i: Journal of Geophysical Research - Earth Surface. - : John Wiley & Sons. - 2169-9003 .- 2169-9011. ; 128:3
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Tidskriftsartikel (refereegranskat)abstract
- The fractionation of copper (Cu) isotope is a process related to the redox fluctuation during soil Cu biogeochemical cycling. For Cu isotope composition in weathered gleysols of tropical zones, the increased rates of redox fluctuations are assumed to occur during gleysol evolution due to the seasonal exchange of groundwater and river water. However, the impact of the frequency of redox fluctuations on soil Cu isotope signatures is rarely documented. Here, we analyzed the variations of Cu content and isotope fractionation in two low-humic gleysol profiles with different pedogenetic processes during weathering in the same basin (Mun River Basin), and found that the frequency of redox fluctuations could determine the magnitude of Cu isotope fractionation. We record an increased light Cu isotopes and identify the stable Cu(I) species retained in the residual soils with the increased frequency of redox fluctuation. Several processes contribute to Cu isotope fractionation at different soil horizons, but most isotope fractionation is related to the re-adsorption or re-precipitation by iron and manganese oxyhydroxide (i.e., ferrihydrite and pyrolusite), especially at the iron or manganese-rich zone. Cu isotope fractionation is sensitive to increased redox fluctuations in the terrestrial ecosystem, and may have significant implications for assessing soil ecological vulnerability under future climate change scenarios.
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| 35. |
- Zhong, Z. H., et al.
(författare)
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Stacked Electron Diffusion Regions and Electron Kelvin-Helmholtz Vortices within the Ion Diffusion Region of Collisionless Magnetic Reconnection
- 2022
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Ingår i: Astrophysical Journal Letters. - : American Astronomical Society. - 2041-8205 .- 2041-8213. ; 926:2
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Tidskriftsartikel (refereegranskat)abstract
- The structure of the electron diffusion region (EDR) is essential for determining how fast the magnetic energy converts to plasma energy during magnetic reconnection. Conventional knowledge of the diffusion region assumes that the EDR is a single layer embedded within the ion diffusion region (IDR). This paper reports the first observation of two EDRs that stack in parallel within an IDR by the Magnetospheric Multiscale mission. The oblique tearing modes can result in these stacked EDRs. Intense electron flow shear in the vicinity of two EDRs induced electron Kelvin-Helmholtz vortices, which subsequently generated kinetic-scale magnetic peak and holes, which may effectively trap electrons. Our analyses show that both the oblique tearing instability and electron Kelvin-Helmholtz instability are important in three-dimensional reconnection since they can control the electron dynamics and structure of the diffusion region through cross-scale coupling.
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| 36. |
- Zhong, Z. H., et al.
(författare)
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Three-Dimensional Electron-Scale Magnetic Reconnection in Earth's Magnetosphere
- 2021
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Ingår i: Geophysical Research Letters. - : American Geophysical Union (AGU). - 0094-8276 .- 1944-8007. ; 48:1
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Tidskriftsartikel (refereegranskat)abstract
- Two-dimensional Hall reconnection model can explain the fast release of magnetic energy and most of its predictions have been demonstrated by in situ satellite observations. However, the three-dimensional effect to reconnection remains poorly known. Recent numerical simulations have shown that three-dimensional evolution is more complex than two-dimensional in that reconnection occurs in multiple sites that are not necessarily in the primary neutral current sheet. Here, we present the first observational evidence for localized secondary reconnection at the separatrix surface of a magnetic flux rope (MFR). This secondary reconnection occurs between the axial magnetic field of the MFR, which points out-of-plane of the Earth's magnetopause reconnection, and the magnetospheric field. This three-dimensional electron-scale reconnection in the exhaust facilitates the cross-scale energy conversion from the macro-scale down to electron-scale.
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| 37. |
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- 2017
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Ingår i: Physical Review D. - 2470-0010 .- 2470-0029. ; 96:2
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Tidskriftsartikel (refereegranskat)
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