| 1. |
- Janz, Niklas, et al.
(författare)
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Diversity begets diversity : host expansions and the diversification of plant-feeding insects
- 2006
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Ingår i: BMC Evolutionary Biology. - 1471-2148. ; 6:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: Plant-feeding insects make up a large part of earth's total biodiversity. While it has been shown that herbivory has repeatedly led to increased diversification rates in insects, there has been no compelling explanation for how plant-feeding has promoted speciation rates. There is a growing awareness that ecological factors can lead to rapid diversification and, as one of the most prominent features of most insect-plant interactions, specialization onto a diverse resource has often been assumed to be the main process behind this diversification. However, specialization is mainly a pruning process, and is not able to actually generate diversity by itself. Here we investigate the role of host colonizations in generating insect diversity, by testing if insect speciation rate is correlated with resource diversity.Results: By applying a variant of independent contrast analysis, specially tailored for use on questions of species richness (MacroCAIC), we show that species richness is strongly correlated with diversity of host use in the butterfly family Nymphalidae. Furthermore, by comparing the results from reciprocal sister group selection, where sister groups were selected either on the basis of diversity of host use or species richness, we find that it is likely that diversity of host use is driving species richness, rather than vice versa.Conclusion: We conclude that resource diversity is correlated with species richness in the Nymphalidae and suggest a scenario based on recurring oscillations between host expansions – the incorporation of new plants into the repertoire – and specialization, as an important driving force behind the diversification of plant-feeding insects.
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| 2. |
- Janz, Niklas, et al.
(författare)
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On oscillations and flutterings-A reply to Hamm and Fordyce
- 2016
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Ingår i: Evolution. - : Wiley. - 0014-3820 .- 1558-5646. ; 70:5, s. 1150-1155
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Tidskriftsartikel (refereegranskat)abstract
- The diversification of plant-feeding insects is seen as a spectacular example of evolutionary radiation. Hence, developing hypotheses to explain this diversification, and methods to test them, is an important undertaking. Some years ago, we presented the oscillation hypothesis as a general process that could drive diversification of this and similar interactions, through repeated expansions and contractions of host ranges. Hamm and Fordyce recently presented a study with the outspoken intention of testing this hypothesis where they concluded that the oscillation hypothesis was not supported. We point out several problems with their study, owing both to a misrepresentation of our hypothesis and to the methods. We provide a clarifying description of the oscillation hypothesis, and detail some predictions that follow from it. A reanalysis of the data demonstrated a troubling sensitivity of the "SSE" class of models to small changes in model specification, and we caution against using them for tests of trait-based diversification. Future tests of the hypothesis also need to better acknowledge the processes behind the host range oscillations. We suspect that doing so will resolve some of the apparent conflicts between our hypothesis and the view presented by Hamm and Fordyce.
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| 3. |
- Ma, Lijun, et al.
(författare)
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A phylogenomic tree inferred with an inexpensive PCR-generated probe kit resolves higher-level relationships among Neptis butterflies (Nymphalidae: Limenitidinae)
- 2020
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Ingår i: Systematic Entomology. - : Wiley. - 0307-6970 .- 1365-3113. ; 45:4, s. 924-934
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Tidskriftsartikel (refereegranskat)abstract
- Recent advances in obtaining reduced representation libraries for next-generation sequencing permit phylogenomic analysis of species-rich, recently diverged taxa. In this study, we performed sequence capture with homemade PCR-generated probes to study diversification among closely related species in a large insect genus to examine the utility of this method. We reconstructed the phylogeny of Neptis Fabricius, a large and poorly studied nymphalid butterfly genus distributed throughout the Old World. We inferred relationships among 108 Neptis samples using 89 loci totaling up to 84 519 bp per specimen. Our taxon sample focused on Palearctic, Oriental and Australasian species, but included 8 African species and outgroups from 5 related genera. Maximum likelihood and Bayesian analyses yielded identical trees with full support for almost all nodes. We confirmed that Neptis is not monophyletic because Lasippa heliodore (Fabricius) and Phaedyma amphion (Linnaeus) are nested within the genus, and we redefine species groups for Neptis found outside of Africa. The statistical support of our results demonstrates that the probe set we employed is useful for inferring phylogenetic relationships among Neptis species and likely has great value for intrageneric phylogenetic reconstruction of Lepidoptera. Based on our results, we revise the following two taxa: Neptis heliodore comb. rev. and Neptis amphion comb. rev.
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| 4. |
- Roger, Fabian, et al.
(författare)
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Airborne environmental DNA metabarcoding for the monitoring of terrestrial insects—A proof of concept from the field
- 2022
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Ingår i: Environmental DNA. - : Wiley. - 2637-4943. ; 4:4, s. 790-807
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Tidskriftsartikel (refereegranskat)abstract
- Biodiversity is in decline due to human-induced pressures on ecosystems around the world. To be able to counteract this alarming trend, it is paramount to closely monitor biodiversity at global scales. Because this is practically impossible with traditional methods, the last decade has seen a strong push for new solutions. In aquatic ecosystems, the monitoring of species from environmental DNA (eDNA) has emerged as one of the most powerful tools at our disposal, but in terrestrial ecosystems, the power of eDNA for monitoring has so far been hampered by the local scale of the samples. In this study, we report the successful detection of insects from airborne eDNA from samples taken in the field. We compare our results to two traditional insect monitoring methods (1) light traps for moth monitoring and (2) transect walks for the monitoring of butterflies and wild bees. Airborne eDNA metabarcoding revealed DNA from six classes of arthropods, and twelve order of insects—including representatives from the four largest orders: Diptera (flies), Lepidoptera (butterflies and moths), Coleoptera (beetles), and Hymenoptera (bees, wasps, and ants). We did not detect all species observed using traditional methods and suggest further directions for the development of airborne eDNA metabarcoding. We also recovered DNA from nine species of vertebrates, including frogs, birds, and mammals as well as from 12 other phyla. Airborne eDNA has the potential to become a powerful tool for terrestrial biodiversity monitoring, with many impactful applications including the monitoring of pests, invasive, or endangered species and disease vectors.
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| 5. |
- Schäpers, Alexander, et al.
(författare)
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Clutch size and host use in butterflies - and how to measure diet breadth
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- The utilization of host plants is a central aspect of herbivorous insect life-history and known to promote processes of diversification in this group. In species that aggregate their eggs, female selection of a suitable egg-laying site is especially important, since a large proportion of the realized fitness will depend on few oviposition events. A cluster of larvae also requires a large resource to complete development and thus resource size may further limit the range of suitable hosts. We investigated whether there is a relationship between clutch size and diet breadth for 206 nymphalid butterfly species, using phylogenetic comparative methods. Results were consistent across several taxonomic and phylogenetic diet breadth measures, suggesting that some taxonomic measures may be as good approximations as the more cumbersome estimates based on phylogenetic distance. Treating diet breadth and clutch size as continuous data indicated no relationship between the traits, while categorizing them into binary form showed that they evolve in a correlated fashion. The discordance between analyses indicated that clutch size may be constrained among extreme generalists, as polyphagous clutch layers were rare. We found clutch-laying to be a relatively conserved trait in the phylogeny and less flexible than variation in degree of host plant specialization. Host plant growth form did not influence the clutch size diet breath relationship, but was weakly correlated with both factors. We discuss the general role of conservative life-history traits, such as clutch size, for the evolutionary dynamics of more labile traits such as diet breadth among phytophagous insects.
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| 6. |
- Wang, Houshuai, et al.
(författare)
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Polyphagy and diversification in tussock moths : Support for the oscillation hypothesis from extreme generalists
- 2017
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Ingår i: Ecology and Evolution. - : Wiley. - 2045-7758. ; 7:19, s. 7975-7986
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Tidskriftsartikel (refereegranskat)abstract
- Theory on plasticity driving speciation, as applied to insect-plant interactions (the oscillation hypothesis), predicts more species in clades with higher diversity of host use, all else being equal. Previous support comes mainly from specialized herbivores such as butterflies, and plasticity theory suggests that there may be an upper host range limit where host diversity no longer promotes diversification. The tussock moths (Erebidae: Lymantriinae) are known for extreme levels of polyphagy. We demonstrate that this system is also very different from butterflies in terms of phylogenetic signal for polyphagy and for use of specific host orders. Yet we found support for the generality of the oscillation hypothesis, in that clades with higher diversity of host use were found to contain more species. These clades also consistently contained the most polyphagous single species. Comparing host use in Lymantriinae with related taxa shows that the taxon indeed stands out in terms of the frequency of polyphagous species. Comparative evidence suggests that this is most probably due to its nonfeeding adults, with polyphagy being part of a resulting life history syndrome. Our results indicate that even high levels of plasticity can drive diversification, at least when the levels oscillate over time.
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| 7. |
- Aduse-Poku, Kwaku, et al.
(författare)
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Expanded molecular phylogeny of the genus Bicyclus (Lepidoptera : Nymphalidae) shows the importance of increased sampling for detecting semi-cryptic species and highlights potentials for future studies
- 2017
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Ingår i: Systematics and Biodiversity. - : Informa UK Limited. - 1477-2000 .- 1478-0933. ; 15:2, s. 115-130
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Tidskriftsartikel (refereegranskat)abstract
- The genus Bicyclus is one of the largest groups of African butterflies, but due to the generally cryptic nature and seasonal variation of adult wing patterns, there has been a lot of systematic confusion. With a large research community working with the model species Bicyclus anynana there has been increasing interest in the evolutionary history of the genus. A previous phylogeny started to unravel interesting patterns, but only included 61% of the then known species. With a range of new species having been described in the last decade there has been a need for an updated phylogeny for the genus. We present the most complete phylogeny of Bicyclus yet, including 93% of the currently 103 recognized species and make a range of taxonomic revisions. We revise the status of four previous subspecies and synonymized taxa that in the light of the new genetic data are raised to species level. We also subsume two subspecies and describe a new species, Bicyclus collinsi sp. nov., based on both genetic and morphological evidence. A further new taxon is identified, but not described at this point due to lack of morphological data. Our phylogeny lays a solid foundation for better understanding the evolution of Bicyclus and highlights key species-groups and complexes with intriguing ecological patterns making them prime candidates for future studies. http://zoobank.org/urn:lsid:zoobank.org:pub:2F775351-097E-4CD7-8F8F-A90B26D52DE8
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| 8. |
- Aduse-Poku, Kwaku, et al.
(författare)
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Miocene Climate and Habitat Change Drove Diversification in Bicyclus, Africa's Largest Radiation of Satyrine Butterflies
- 2022
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Ingår i: Systematic Biology. - : Oxford University Press (OUP). - 1063-5157 .- 1076-836X. ; 71:3, s. 570-588
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Tidskriftsartikel (refereegranskat)abstract
- Compared to other regions, the drivers of diversification in Africa are poorly understood. We studied a radiation of insects with over 100 species occurring in a wide range of habitats across the Afrotropics to investigate the fundamental evolutionary processes and geological events that generate and maintain patterns of species richness on the continent. By investigating the evolutionary history of Bicyclus butterflies within a phylogenetic framework, we inferred the group's origin at the Oligo-Miocene boundary from ancestors in the Congolian rainforests of central Africa. Abrupt climatic fluctuations during the Miocene (ca. 19-17 Ma) likely fragmented ancestral populations, resulting in at least eight early-divergent lineages. Only one of these lineages appears to have diversified during the drastic climate and biome changes of the early Miocene, radiating into the largest group of extant species. The other seven lineages diversified in forest ecosystems during the late Miocene and Pleistocene when climatic conditions were more favorable-warmer and wetter. Our results suggest changing Neogene climate, uplift of eastern African orogens, and biotic interactions have had different effects on the various subclades of Bicyclus, producing one of the most spectacular butterfly radiations in Africa. [Afrotropics; biodiversity; biome; biotic interactions; Court Jester; extinction; grasslands; paleoclimates; Red Queen; refugia forests; dependent-diversification; speciation.].
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| 9. |
- Aduse-Poku, Kwaku, et al.
(författare)
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Molecular phylogeny and generic-level taxonomy of the widespread palaeotropical 'Heteropsis clade' (Nymphalidae : Satyrinae: Mycalesina)
- 2016
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Ingår i: Systematic Entomology. - : Wiley. - 0307-6970. ; 41:4, s. 717-731
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Tidskriftsartikel (refereegranskat)abstract
- The mycalesine butterfly genus Heteropsis Westwood, 1850 (Satyrinae: Mycalesina) has recently been conceived to be represented in three major palaeotropical regions (Madagascar, Africa and Asia), but there has been no formal taxonomic treatment covering this entire group. Studies aimed at understanding the evolutionary success of Mycalesina in the Old World tropics have been hampered by the lack of both a robust phylogeny and a stable nomenclature for this satyrine subtribe. Here, we present a well-supported molecular phylogeny based on 10 genes and 133 exemplar taxa, representing almost all known species groups of Heteropsis (s.l.), and including all but four known species in Madagascar. We also combine sequences of the exemplars with a morphological matrix of 428 characters. The widespread 'Heteropsis clade' is confirmed as monophyletic, but lineages in different geographic regions also form endemic and well-supported clades with deep divergences among them. Here we establish this group as comprising three genera, Heteropsis (Malagasy region only), Telinga Moore, 1880 (Asia), and Brakefieldia gen.n. (Africa). We recover the genera Telinga and Brakefieldia as sisters with high support. Each genus is taxonomically characterized and a revised synonymic checklist is appended with new combinations and some changes in rank. With a well-resolved topology and updates to the taxonomy of the group, researchers are now in a position to explore the drivers of the spectacular radiation of the group, notably in Madagascar, where the highest phenotypic and species diversity occurs.
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| 10. |
- Aduse-Poku, Kwaku, et al.
(författare)
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Systematics and historical biogeography of the Old World butterfly subtribe Mycalesina (Lepidoptera: Nymphalidae: Satyrinae)
- 2015
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Ingår i: BMC Evolutionary Biology. - : Springer Science and Business Media LLC. - 1471-2148. ; 15, s. 167-167
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: Butterflies of the subtribe Mycalesina have radiated successfully in almost all habitat types in Africa, Madagascar, the Indian subcontinent, Indo-China and Australasia. Studies aimed at understanding the reasons behind the evolutionary success of this spectacular Old World butterfly radiation have been hampered by the lack of a stable phylogeny for the group. Here, we have reconstructed a robust phylogenetic framework for the subtribe using 10 genes from 195 exemplar taxa. RESULTS: We recovered seven well supported clades within the subtribe corresponding to the five traditional genera (Lohora, Heteropsis, Hallelesis, Bicyclus, Mycalesis), one as recently revised (Mydosama) and one newly revised genus (Culapa). The phylogenetic relationships of these mycalesine genera have been robustly established for the first time. Within the proposed phylogenetic framework, we estimated the crown age of the subtribe to be 40 Million years ago (Mya) and inferred its ultimate origin to be in Asia. Our results reveal both vicariance and dispersal as factors responsible for the current widespread distribution of the group in the Old World tropics. We inferred that the African continent has been colonized at least twice by Asian mycalesines within the last 26 and 23 Mya. In one possible scenario, an Asian ancestor gave rise to Heteropsis on continental Africa, which later dispersed into Madagascar and most likely back colonised Asia. The second colonization of Africa by Asian ancestors resulted in Hallelesis and Bicyclus on continental Africa, the descendants of which did not colonise other regions but rather diversified only in continental Africa. The genera Lohora and Mydosama are derivatives of ancestors from continental Asia. CONCLUSION: Our proposed time-calibrated phylogeny now provides a solid framework within which we can implement mechanistic studies aimed at unravelling the ecological and evolutionary processes that culminated in the spectacular radiation of mycalesines in the Old World tropics.
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| 11. |
- Ahola, Virpi, et al.
(författare)
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Butterfly genomics : Insights from the genome of melitaea cinxia
- 2017
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Ingår i: Annales Zoologici Fennici. - : Finnish Zoological and Botanical Publishing Board. - 0003-455X .- 1797-2450. ; 54:1-4, s. 275-291
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Tidskriftsartikel (refereegranskat)abstract
- The first lepidopteran genome (Bombyx mori) was published in 2004. Ten years later the genome of Melitaea cinxia came out as the third butterfly genome published, and the first eukaryotic genome sequenced in Finland. Owing to Ilkka Hanski, the M. cinxia system in the Åland Islands has become a famous model for metapopulation biology. More than 20 years of research on this system provides a strong ecological basis upon which a genetic framework could be built. Genetic knowledge is an essential addition for understanding eco-evolutionary dynamics and the genetic basis of variability in life history traits. Here we review the process of the M. cinxia genome project, its implications for lepidopteran genome evolution, and describe how the genome has been used for gene expression studies to identify genetic consequences of habitat fragmentation. Finally, we introduce some future possibilities and challenges for genomic research in M. cinxia and other Lepidoptera.
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| 12. |
- Ahola, Virpi, et al.
(författare)
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The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
- 2014
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 5, s. 4737-
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Tidskriftsartikel (refereegranskat)abstract
- Previous studies have reported that chromosome synteny in Lepidoptera has been well conserved, yet the number of haploid chromosomes varies widely from 5 to 223. Here we report the genome (393 Mb) of the Glanville fritillary butterfly (Melitaea cinxia; Nymphalidae), a widely recognized model species in metapopulation biology and eco-evolutionary research, which has the putative ancestral karyotype of n = 31. Using a phylogenetic analyses of Nymphalidae and of other Lepidoptera, combined with orthologue-level comparisons of chromosomes, we conclude that the ancestral lepidopteran karyotype has been n = 31 for at least 140 My. We show that fusion chromosomes have retained the ancestral chromosome segments and very few rearrangements have occurred across the fusion sites. The same, shortest ancestral chromosomes have independently participated in fusion events in species with smaller karyotypes. The short chromosomes have higher rearrangement rate than long ones. These characteristics highlight distinctive features of the evolutionary dynamics of butterflies and moths.
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| 13. |
- Antonelli, Alexandre, 1978, et al.
(författare)
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Embracing heterogeneity: Coalescing the tree of life and the future of phylogenomics
- 2019
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Ingår i: PeerJ. - : PeerJ. - 2167-8359. ; 2019:2
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Tidskriftsartikel (refereegranskat)abstract
- Building the Tree of Life (ToL) is a major challenge of modern biology, requiring advances in cyberinfrastructure, data collection, theory, and more. Here, we argue that phylogenomics stands to benefit by embracing the many heterogeneous genomic signals emerging from the first decade of large-scale phylogenetic analysis spawned by high-throughput sequencing (HTS). Such signals include those most commonly encountered in phylogenomic datasets, such as incomplete lineage sorting, but also those reticulate processes emerging with greater frequency, such as recombination and introgression. Here we focus specifically on how phylogenetic methods can accommodate the heterogeneity incurred by such population genetic processes; we do not discuss phylogenetic methods that ignore such processes, such as concatenation or supermatrix approaches or supertrees. We suggest that methods of data acquisition and the types of markers used in phylogenomics will remain restricted until a posteriori methods of marker choice are made possible with routine whole-genome sequencing of taxa of interest. We discuss limitations and potential extensions of a model supporting innovation in phylogenomics today, the multispecies coalescent model (MSC). Macroevolutionary models that use phylogenies, such as character mapping, often ignore the heterogeneity on which building phylogenies increasingly rely and suggest that assimilating such heterogeneity is an important goal moving forward. Finally, we argue that an integrative cyberinfrastructure linking all steps of the process of building the ToL, from specimen acquisition in the field to publication and tracking of phylogenomic data, as well as a culture that values contributors at each step, are essential for progress.
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| 14. |
- Arrizabalaga-Escudero, Aitor, et al.
(författare)
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Trait-based functional dietary analysis provides a better insight into the foraging ecology of bats
- 2019
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Ingår i: Journal of Animal Ecology. - : Wiley. - 1365-2656 .- 0021-8790. ; 88:10, s. 1587-1600
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Tidskriftsartikel (refereegranskat)abstract
- The degree of trophic specialization determines the ability of predators to cope with changing foraging conditions, but in predators that prey on hundreds of species it is challenging to assess, especially when prey identity varies among predator individuals and across space and time. Here, we test the hypothesis that a bat species foraging on flying insects like moths will show ample flexibility in trophic niche, and this irrespective of phylogenetic relationships among moths, so as to cope with a high diversity of prey types that vary across seasons. We predict that individual bats will show functional dietary differences consistent with energetic requirements and hunting skills. We used DNA metabarcoding to determine the diet of 126 Mediterranean horseshoe bats (Rhinolophus euryale) from two different sites during three seasons. Simultaneously, we measured moth availability and characterized the traits of 290 moth taxa. Next, we explored the relationship between phylogeny and traits of all consumed and available moth taxa. Finally, we assessed the relationship between individual traits of bats and traits related to prey profitability, for which we used the RLQ and fourth-corner statistical techniques. Seasonality was the main factor explaining the functional dietary variation in adult bats, with moths consumed irrespective of their phylogenetic relationships. While adults consumed moths with a broad range in wing loading, body mass and echolocation detection ability, juveniles consumed slower, smaller and lighter moths, which suggests that young individuals may undergo some fitness gain and/or psychomotor learning process during which they would acquire more effective foraging skills. Our approach revealed a degree of functional flexibility in the trophic niche previously unknown for an insectivorous bat. Rhinolophus euryale consumed a wide variety of moth taxa differing in profitability throughout seasons and between ontogenetic stages. We showed the validity of trait-based approaches to gain new insights in the trophic specialization of predators consuming hundreds of species of prey.
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| 15. |
- Arvidsson, Niklas, et al.
(författare)
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Begreppet sedvana
- 2019
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Ingår i: Juridiska grundbegrepp. - 9789144127118 ; , s. 191-238
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Bokkapitel (refereegranskat)
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| 16. |
- Bakker, F. T., et al.
(författare)
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The Global Museum: natural history collections and the future of evolutionary science and public education
- 2020
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Ingår i: PeerJ. - : PeerJ. - 2167-8359. ; 8
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Tidskriftsartikel (refereegranskat)abstract
- Natural history museums are unique spaces for interdisciplinary research and educational innovation. Through extensive exhibits and public programming and by hosting rich communities of amateurs, students, and researchers at all stages of their careers, they can provide a place-based window to focus on integration of science and discovery, as well as a locus for community engagement. At the same time, like a synthesis radio telescope, when joined together through emerging digital resources, the global community of museums (the 'Global Museum') is more than the sum of its parts, allowing insights and answers to diverse biological, environmental, and societal questions at the global scale, across eons of time, and spanning vast diversity across the Tree of Life. We argue that, whereas natural history collections and museums began with a focus on describing the diversity and peculiarities of species on Earth, they are now increasingly leveraged in new ways that significantly expand their impact and relevance. These new directions include the possibility to ask new, often interdisciplinary questions in basic and applied science, such as in biomimetic design, and by contributing to solutions to climate change, global health and food security challenges. As institutions, they have long been incubators for cutting-edge research in biology while simultaneously providing core infrastructure for research on present and future societal needs. Here we explore how the intersection between pressing issues in environmental and human health and rapid technological innovation have reinforced the relevance of museum collections. We do this by providing examples as food for thought for both the broader academic community and museum scientists on the evolving role of museums. We also identify challenges to the realization of the full potential of natural history collections and the Global Museum to science and society and discuss the critical need to grow these collections. We then focus on mapping and modelling of museum data (including place-based approaches and discovery), and explore the main projects, platforms and databases enabling this growth. Finally, we aim to improve relevant protocols for the long-term storage of specimens and tissues, ensuring proper connection with tomorrow's technologies and hence further increasing the relevance of natural history museums.
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| 17. |
- Berglund, Eva C, et al.
(författare)
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Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment
- 2013
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Ingår i: BMC Genomics. - : BioMed Central. - 1471-2164. ; 14, s. 856-
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Tidskriftsartikel (refereegranskat)abstract
- Background: Target enrichment and resequencing is a widely used approach for identification of cancer genes and genetic variants associated with diseases. Although cost effective compared to whole genome sequencing, analysis of many samples constitutes a significant cost, which could be reduced by pooling samples before capture. Another limitation to the number of cancer samples that can be analyzed is often the amount of available tumor DNA. We evaluated the performance of whole genome amplified DNA and the power to detect subclonal somatic single nucleotide variants in non-indexed pools of cancer samples using the HaloPlex technology for target enrichment and next generation sequencing. Results: We captured a set of 1528 putative somatic single nucleotide variants and germline SNPs, which were identified by whole genome sequencing, with the HaloPlex technology and sequenced to a depth of 792-1752. We found that the allele fractions of the analyzed variants are well preserved during whole genome amplification and that capture specificity or variant calling is not affected. We detected a large majority of the known single nucleotide variants present uniquely in one sample with allele fractions as low as 0.1 in non-indexed pools of up to ten samples. We also identified and experimentally validated six novel variants in the samples included in the pools. Conclusion: Our work demonstrates that whole genome amplified DNA can be used for target enrichment equally well as genomic DNA and that accurate variant detection is possible in non-indexed pools of cancer samples. These findings show that analysis of a large number of samples is feasible at low cost, even when only small amounts of DNA is available, and thereby significantly increases the chances of indentifying recurrent mutations in cancer samples.
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| 18. |
- Bijl, Wouter, et al.
(författare)
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Butterfly dichromatism primarily evolved via Darwin's, not Wallace's, model
- 2020
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Ingår i: Evolution letters. - : Oxford University Press (OUP). - 2056-3744. ; 4:6, s. 545-555
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Tidskriftsartikel (refereegranskat)abstract
- Sexual dimorphism is typically thought to result from sexual selection for elaborated male traits, as proposed by Darwin. However, natural selection could reduce expression of elaborated traits in females, as proposed by Wallace. Darwin and Wallace debated the origins of dichromatism in birds and butterflies, and although evidence in birds is roughly equal, if not in favor of Wallace's model, butterflies lack a similar scale of study. Here, we present a large‐scale comparative phylogenetic analysis of the evolution of butterfly coloration, using all European non‐hesperiid butterfly species (n = 369). We modeled evolutionary changes in coloration for each species and sex along their phylogeny, thereby estimating the rate and direction of evolution in three‐dimensional color space using a novel implementation of phylogenetic ridge regression. We show that male coloration evolved faster than female coloration, especially in strongly dichromatic clades, with male contribution to changes in dichromatism roughly twice that of females. These patterns are consistent with a classic Darwinian model of dichromatism via sexual selection on male coloration, suggesting this model was the dominant driver of dichromatism in European butterflies.
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| 19. |
- Bjorkgren, I., et al.
(författare)
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Targeted inactivation of the mouse epididymal beta-defensin 41 alters sperm flagellar beat pattern and zona pellucida binding
- 2016
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Ingår i: Molecular and Cellular Endocrinology. - : Elsevier BV. - 0303-7207. ; 427:C, s. 143-154
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Tidskriftsartikel (refereegranskat)abstract
- During epididymal maturation, sperm acquire the ability to swim progressively by interacting with proteins secreted by the epididymal epithelium. Beta-defensin proteins, expressed in the epididymis, continue to regulate sperm motility during capacitation and hyperactivation in the female reproductive tract. We characterized the mouse beta-defensin 41 (DEFB41), by generating a mouse model with iCre recombinase inserted into the first exon of the gene. The homozygous Defb41(iCre/iCre) knock-in mice lacked Defb41 expression and displayed iCre recombinase activity in the principal cells of the proximal epididymis. Heterozygous Defb41(iCre/+) mice can be used to generate epididymis specific conditional knock-out mouse models. Homozygous Defb41(iCre/iCre) sperm displayed a defect in sperm motility with the flagella primarily bending in the pro-hook conformation while capacitated wild-type sperm more often displayed the anti-hook conformation. This led to a reduced straight line motility of Defb41(iCre/liCre) sperm and weaker binding to the oocyte. Thus, DEFB41 is required for proper sperm maturation.
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| 20. |
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| 21. |
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| 22. |
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| 23. |
- Brehm, Gunnar, et al.
(författare)
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New World geometrid moths (Lepidoptera: Geometridae) : Molecular phylogeny, biogeography, taxonomic updates and description of 11 new tribes
- 2019
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Ingår i: Arthropod Systematics and Phylogeny. - 1863-7221. ; 77:3, s. 457-486
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Tidskriftsartikel (refereegranskat)abstract
- We analysed a molecular dataset of 1206 Geometroidea terminal taxa. In this paper we focus on New World taxa, with 102 Nearctic terminal taxa (97 of which have not previously been subject to molecular phylogenetic analysis) and 398 Neotropical terminal taxa (375 not previously analysed). Up to eleven molecular markers per specimen were included: one mitochondrial (COI) and ten proteincoding nuclear gene regions (Wingless, ArgK, MDH, RpS5, GAPDH, IDH, Ca-ATPase, Nex9, EF-1alpha, CAD). The data were analysed using maximum likelihood approach as implemented in IQ-TREE and RAxML. Photographs of almost all voucher specimens are provided together with relevant type material in illustrated electronic catalogues in order to make identities and taxonomic changes transparent. Our analysis concentrates on the level of tribes and genera, many of which are shown to be para-or polyphyletic. In an effort towards a natural system of monophyletic taxa, we propose taxonomic changes: We establish 11 new tribe names (Larentiinae, authors Brehm, Murillo-Ramos & Ounap): Brabirodini new tribe, Chrismopterygini new tribe, Psaliodini new tribe, Pterocyphini new tribe, Rhinurini new tribe, Ennadini new tribe, Cophocerotini new tribe, Erebochlorini new tribe; (Ennominae, authors Brehm, Murillo-Ramos & Sihvonen): Euangeronini new tribe, Oenoptilini new tribe, Pyriniini new tribe. We assign 27 genera for the first time to a tribe, propose 29 new tribe assignments and 26 new generic combinations, we synonymize one tribe and seven genera, revive one tribe, and propose to exclude 119 species from non-monophyletic genera (incertae sedis). Our study provides the data and foundation for numerous future taxonomic revisions of New World geometrid moths. We also examine broad-scale biogeographic patterns of New World Geometridae: While Nearctic species are often nested within the predominantly Neotropical clades, the austral South American fauna forms distinct clades, hinting at a long isolation from the remaining New World fauna.
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| 24. |
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| 25. |
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| 26. |
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| 27. |
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| 28. |
- Brown, Keith S, et al.
(författare)
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Chromosomal evolution in the South American Nymphalidae.
- 2007
-
Ingår i: Hereditas. - 1601-5223. ; 144:4, s. 137-48
-
Tidskriftsartikel (refereegranskat)abstract
- We give the chromosome numbers of about 80 species or subspecies of Biblidinae as well as of numbers of neotropical Libytheinae (one species), Cyrestinae (4) Apaturinae (7), Nymphalinae (about 40), Limenitidinae (16) and Heliconiinae (11). Libytheana has about n=32, the Biblidinae, Apaturinae and Nymphalinae have in general n=31, the Limenitidinae have n=30, the few Argynnini n=31 and the few species of Acraeni studied have also mostly n=31. The results agree with earlier data from the Afrotropical species of these taxa. We supplement these data with our earlier observations on Heliconiini, Danainae and the Neotropical Satyroid taxa. The lepidopteran modal n=29-31 represents clearly the ancestral condition among the Nymphalidae, from which taxa with various chromosome numbers have differentiated. The overall results show that Neotropical taxa have a tendency to evolve karyotype instability, which is in stark contrast to the otherwise stable chromosome numbers that characterize both Lepidoptera and Trichoptera.
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| 29. |
- Call, Elsa, et al.
(författare)
-
Museomics : Phylogenomics of the Moth Family Epicopeiidae (Lepidoptera) Using Target Enrichment
- 2021
-
Ingår i: Insect Systematics and Diversity. - : Oxford University Press (OUP). - 2399-3421. ; 5:2
-
Tidskriftsartikel (refereegranskat)abstract
- Billions of specimens can be found in natural history museum collections around the world, holding potential molecular secrets to be unveiled. Among them are intriguing specimens of rare families of moths that, while represented in morphology-based works, are only beginning to be included in genomic studies: Pseudobistonidae, Sematuridae, and Epicopeiidae. These three families are part of the superfamily Geometroidea, which has recently been defined based on molecular data. Here we chose to focus on these three moth families to explore the suitability of a genome reduction method, target enrichment (TE), on museum specimens. Through this method, we investigated the phylogenetic relationships of these families of Lepidoptera, in particular the family Epicopeiidae. We successfully sequenced 25 samples, collected between 1892 and 2001. We use 378 nuclear genes to reconstruct a phylogenetic hypothesis from the maximum likelihood analysis of a total of 36 different species, including 19 available transcriptomes. The hypothesis that Sematuridae is the sister group of Epicopeiidae + Pseudobistonidae had strong support. This study thus adds to the growing body of work, demonstrating that museum specimens can successfully contribute to molecular phylogenetic studies.
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| 30. |
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| 31. |
- Cassel-Lundhagen, Anna, et al.
(författare)
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Wing morphology of the butterfly Coenonympha arcania in Europe: Traces of both historical isolation in glacial refugia and current adaptation
- 2020
-
Ingår i: Journal of Zoological Systematics and Evolutionary Research. - : Wiley. - 0947-5745 .- 1439-0469. ; 58:4, s. 929-943
-
Tidskriftsartikel (refereegranskat)abstract
- In this study, we examined the evolutionary outcome of and interplay between historic isolation and current selection pressures on traits more or less closely connected to fitness in the Pearly Heath butterfly (Coenonympha arcania) across its range in Europe. We hypothesized that a trait mean is more related to historic events if it has low connection to fitness, while a trait more closely connected with fitness is expected to have a mean that relates more to current selection pressures. In order to test this, we collected 322 butterflies from across the species range in Europe and measured five wing traits relating to size and color patterns. To infer a phylogeographic history for each individual, we sequenced a 594 bp fragment of the COI gene. The morphological data were then analyzed in relation to selected climatic variables and the history of individuals to disentangle which factors best correlated with morphological variation. The results supported our hypothesis in that wing sizes correlated with summer precipitation but not with its inferred location during the last glaciation. Eyespot position, on the other hand, correlated with the history of individuals but not with the analyzed climatic indicators. The sizes of the black spot and the white band, two traits that were expected to have intermediate selection pressure, were associated with both history and current conditions. Thus, this study illustrates the fascinating interplay between events and processes that lead to a specific evolutionary outcome.
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| 32. |
- Chazot, Nicolas, et al.
(författare)
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Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies
- 2021
-
Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 12:1
-
Tidskriftsartikel (refereegranskat)abstract
- The global increase in species richness toward the tropics across continents and taxonomic groups, referred to as the latitudinal diversity gradient, stimulated the formulation of many hypotheses to explain the underlying mechanisms of this pattern. We evaluate several of these hypotheses to explain spatial diversity patterns in a butterfly family, the Nymphalidae, by assessing the contributions of speciation, extinction, and dispersal, and also the extent to which these processes differ among regions at the same latitude. We generate a time-calibrated phylogeny containing 2,866 nymphalid species (~45% of extant diversity). Neither speciation nor extinction rate variations consistently explain the latitudinal diversity gradient among regions because temporal diversification dynamics differ greatly across longitude. The Neotropical diversity results from low extinction rates, not high speciation rates, and biotic interchanges with other regions are rare. Southeast Asia is also characterized by a low speciation rate but, unlike the Neotropics, is the main source of dispersal events through time. Our results suggest that global climate change throughout the Cenozoic, combined with tropical niche conservatism, played a major role in generating the modern latitudinal diversity gradient of nymphalid butterflies.
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| 33. |
- Chazot, Nicolas, et al.
(författare)
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Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited
- 2019
-
Ingår i: Systematic Biology. - : Oxford University Press (OUP). - 1063-5157 .- 1076-836X. ; 68:5, s. 797-813
-
Tidskriftsartikel (refereegranskat)abstract
- The need for robust estimates of times of divergence is essential for downstream analyses, yet assessing this robustness is still rare. We generated a time-calibrated genus-level phylogeny of butterflies (Papilionoidea), including 994 taxa, up to 10 gene fragments and an unprecedented set of 12 fossils and 10 host-plant node calibration points. We compared marginal priors and posterior distributions to assess the relative importance of the former on the latter. This approach revealed a strong influence of the set of priors on the root age but for most calibrated nodes posterior distributions shifted from the marginal prior, indicating significant information in the molecular data set. Using a very conservative approach we estimated an origin of butterflies at 107.6 Ma, approximately equivalent to the latest Early Cretaceous, with a credibility interval ranging from 89.5 Ma (mid Late Cretaceous) to 129.5 Ma (mid Early Cretaceous). In addition, we tested the effects of changing fossil calibration priors, tree prior, different sets of calibrations and different sampling fractions but our estimate remained robust to these alternative assumptions. With 994 genera, this tree provides a comprehensive source of secondary calibrations for studies on butterflies.
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| 34. |
- Chen, Lu, et al.
(författare)
-
Fourteen complete mitochondrial genomes of butterflies from the genus Lethe (Lepidoptera, Nymphalidae, Satyrinae) with mitogenome-based phylogenetic analysis
- 2020
-
Ingår i: Genomics. - : Elsevier BV. - 0888-7543. ; 112:6, s. 4435-4441
-
Tidskriftsartikel (refereegranskat)abstract
- The mitochondrial genome (mitogenome) can help us understand the phylogenetic relationships within the genus Lethe and the subfamily Satyrinae. In this study, we sequenced the complete mitogenomes of 14 Lethe species, which range in size from 15,225 to 15,271 bp, with both 37 genes (13 PCGs, 22 tRNAs, 2 rRNAs) and a noncoding A + T-rich region. The gene arrangement and orientation is similar to typical mitogenomes of Lepidoptera. The Ka/Ks ratio shows that cox1 has the slowest evolutionary rate. The secondary structure of trnN lacks the Pseudouracil loop (TψC loop) in most Lethe species. The inferred phylogenetic analyses show that Lethe is a well-supported monophyletic group, and reveal 2 major clades within the genus Lethe, which is consistent with previous morphological classifications.
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| 35. |
- Corvellec, Hervé, et al.
(författare)
-
Resourcification : A Non-Essentialist Theory of Resources for Sustainable Development
- 2021
-
Ingår i: Sustainable Development. - 0968-0802. ; 29:6, s. 1249-1256
-
Tidskriftsartikel (refereegranskat)abstract
- Overuse of resources is accelerating today’s negative trends in climate change, ecosystem destruction, and biodiversity loss. The ultimate result is contemporary human societies are reaching or exceeding the limits of planetary boundaries. It is therefore imperative to articulate a new theoretical understanding of resources and the ethical, political and environmental conditions of their use. In this article, we introduce a radical departure from existing paradigms, which treat resources as having fixed essential qualities usually ready-to-exploit by anyone who finds them, to a non-essentialist theory of how resources never exist in this fashion as such. Instead, they come into being as the result of social processes. We label this approach resourcification. This shift offers a new theoretical platform for developing a post-sustainability understanding of the relationships of humans to humans, to other living creatures, and to the physical environment, which is more suited to meet the challenges of working with the sustainable development goals in the Anthropocene.
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| 36. |
- De Moya, Robert S., et al.
(författare)
-
Interrelationships and diversification of Argynnis Fabricius and Speyeria Scudder butterflies
- 2017
-
Ingår i: Systematic Entomology. - : Wiley. - 0307-6970. ; 42:4, s. 635-649
-
Tidskriftsartikel (refereegranskat)abstract
- Diverse radiations of insects are often associated with adaptations to host plants, and well-resolved phylogenetic relationships are required to fully understand them. Palearctic Argynnis and related subgenera, together with North American Speyeria butterflies make up a radiation whose species hypotheses are confounded by shared wing colour patterns between sympatric populations of closely related recognized species. Previous studies of this group indicate that Speyeria is a lineage within Argynnis, but sampling in these studies has either involved too few Speyeria species or incomplete sampling of Argynnis species. Thus, no comprehensive phylogenetic analysis exists for all members that answers the question of monophyly of Speyeria, or other subgeneric taxa, and their relationship to Argynnis species. We completed a phylogenetic analysis of all North American Speyeria species and all but one species within Argynnis, using one mitochondrial (cytochrome c oxidase I, COI) and four nuclear genes [elongation factor 1 alpha (EF1α), wingless (WG), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and ribosomal protein S5 (RPS5)]. The results indicate three major lineages within Argynnis s.l.: two Palearctic and one containing both Palearctic and Nearctic species. In summary, the phylogenetic analyses suggest the need for reorganization into three natural groups: Argynnis, Fabriciana and Speyeria. Within each of these genera the phylogenetic hypothesis indicates an evolutionary history marked by rapid diversification and potential extinction, followed by ongoing lineage sorting. The position of North American Speyeria is nested within the Palearctic lineages, which indicates that the radiation began in Asia and was fuelled by existing Viola diversity in North America. Dating analyses of Viola and Speyeria corroborate this hypothesis. The current North American Speyeria species are mixed on the tree, indicating a recent and ongoing radiation. These results provide needed clarity on the evolution of this group, which contains species of conservation concern.
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| 37. |
- Dhungel, Bidur, et al.
(författare)
-
Molecular systematics of the subfamily Limenitidinae (Lepidoptera : Nymphalidae)
- 2018
-
Ingår i: PeerJ. - : PeerJ. - 2167-8359. ; 2018:2
-
Tidskriftsartikel (refereegranskat)abstract
- We studied the systematics of the subfamily Limenitidinae (Lepidoptera: Nymphalidae) using molecular methods to reconstruct a robust phylogenetic hypothesis. The molecular data matrix comprised 205 Limenitidinae species, four outgroups, and 11,327 aligned nucleotide sites using up to 18 genes per species of which seven genes (CycY, Exp1, Nex9, PolII, ProSup, PSb and UDPG6DH) have not previously been used in phylogenetic studies. We recovered the monophyly of the subfamily Limenitidinae and seven higher clades corresponding to four traditional tribes Parthenini, Adoliadini, Neptini, Limenitidini as well as three additional independent lineages. One contains the genera Harma C Cymothoe and likely a third, Bhagadatta, and the other two independent lineages lead to Pseudoneptis and to Pseudacraea. These independent lineages are circumscribed as new tribes. Parthenini was recovered as sister to rest of Limenitidinae, but the relationships of the remaining six lineages were ambiguous. A number of genera were found to be non-monophyletic, with Pantoporia, Euthalia, Athyma, and Parasarpa being polyphyletic, whereas Limenitis, Neptis, Bebearia, Euryphura, and Adelpha were paraphyletic.
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| 38. |
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| 39. |
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| 40. |
- Duplouy, Anne, et al.
(författare)
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Towards unravelling Wolbachia global exchange : a contribution from the Bicyclus and Mylothris butterflies in the Afrotropics
- 2020
-
Ingår i: BMC Microbiology. - : Springer Science and Business Media LLC. - 1471-2180. ; 20:1
-
Tidskriftsartikel (refereegranskat)abstract
- Background: Phylogenetically closely related strains of maternally inherited endosymbiotic bacteria are often found in phylogenetically divergent, and geographically distant insect host species. The interspecies transfer of the symbiont Wolbachia has been thought to have occurred repeatedly, facilitating its observed global pandemic. Few ecological interactions have been proposed as potential routes for the horizontal transfer of Wolbachia within natural insect communities. These routes are however likely to act only at the local scale, but how they may support the global distribution of some Wolbachia strains remains unclear. Results: Here, we characterize the Wolbachia diversity in butterflies from the tropical forest regions of central Africa to discuss transfer at both local and global scales. We show that numerous species from both the Mylothris (family Pieridae) and Bicyclus (family Nymphalidae) butterfly genera are infected with similar Wolbachia strains, despite only minor interclade contacts across the life cycles of the species within their partially overlapping ecological niches. The phylogenetic distance and differences in resource use between these genera rule out the role of ancestry, hybridization, and shared host-plants in the interspecies transfer of the symbiont. Furthermore, we could not identify any shared ecological factors to explain the presence of the strains in other arthropod species from other habitats, or even ecoregions. Conclusion: Only the systematic surveys of the Wolbachia strains from entire species communities may offer the material currently lacking for understanding how Wolbachia may transfer between highly different and unrelated hosts, as well as across environmental scales.
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| 41. |
- Edger, Patrick P., et al.
(författare)
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The butterfly plant arms-race escalated by gene and genome duplications
- 2015
-
Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 112:27, s. 8362-8366
-
Tidskriftsartikel (refereegranskat)abstract
- Coevolutionary interactions are thought to have spurred the evolution of key innovations and driven the diversification of much of life on Earth. However, the genetic and evolutionary basis of the innovations that facilitate such interactions remains poorly understood. We examined the coevolutionary interactions between plants (Brassicales) and butterflies (Pieridae), and uncovered evidence for an escalating evolutionary arms-race. Although gradual changes in trait complexity appear to have been facilitated by allelic turnover, key innovations are associated with gene and genome duplications. Furthermore, we show that the origins of both chemical defenses and of molecular counter adaptations were associated with shifts in diversification rates during the arms-race. These findings provide an important connection between the origins of biodiversity, coevolution, and the role of gene and genome duplications as a substrate for novel traits.
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| 42. |
- Espeland, Marianne, 1981-
(författare)
-
Diversification on an ancient Darwinian island : Evolutionary history of caddisflies (Trichoptera) and other organisms on New Caledonia
- 2010
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Islands are either of continental or oceanic origin, and the biota of such islands are a result of vicariance and dispersal, respectively. New Caledonia, in the South Pacific, is a part of former Gondwana, but the origin of its biota is heavily debated. Geological studies show that the island was submerged in the Eocene, and that oceanic crust was obducted onto New Caledonia leaving a thick layer of ultramafic rocks on top of the island. We tested the null hypothesis that New Caledonian biota are a result of old Gondwanan vicariance by fitting diversification models on phylogenies from the literature and calculating the gamma statistic. According to the null hypothesis diversification is gradual over time. If on the other hand the biota are a result of recent dispersal or have survived in refugia we would expect slowing of diversification over time. Based on our results we can reject the null hypothesis of old vicariance for the New Caledonian biota. The caddisfly (Trichoptera) fauna on New Caledonia is exceptionally rich with around 600 species, and more than 99.9% are endemic. Molecular phylogenetic hypotheses for three monophyletic caddisfly radiations, Xanthochorema, Caledopsyche et al. and Agmina, are presented. Age estimates agrees with the geological evidence. Three new species of Xanthochorema are described and more than 63% of the Agmina species are new to science. The ultramafic rock substrate, with high heavy metal concentration, has led to high levels of plant adaptation on New Caledonia. We show that caddisflies adapted early to this substrate and subsequently dispersed to non-ultramafic substrate several times, with significantly fewer dispersal events back to the toxic substrate, indicating that adaptation to ultramafic substrate is required and recolonization is difficult when this adaptation has been lost. Ultramafic substrate and other environmental factors have been important in driving the diversification of New Caledonian caddisflies.
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| 43. |
- Freitas, André V L, et al.
(författare)
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A new subspecies of Anthanassa (Nymphalidae: Nymphalinae: Melitaeini) from Southeastern Brazil
- 2015
-
Ingår i: Journal of the Lepidopterists' Society. - 0024-0966. ; 69:2, s. 83-90
-
Tidskriftsartikel (refereegranskat)abstract
- A new subspecies of Anthanassa drusilla, ssp rioverde, is described from Minas Gerais, Southeastern Brazil. This new subspecies is isolated from all odier known subspecies of A. drusilla by at least 2000 km, and its closest taxon based on wing pattern is Anthanassa drusilla higginsi, from Cerro Neblina, Venezuela. To our knowledge, the species is endemic to the region of Pogos de Caldas Plateau (Minas Gerais), a region of high natural radiation and heavily impacted by mining. Since the entire geographic distribution and conservation status of this subspecies is unknown, it is highly recommended that immediate measures are taken to minimize the environmental impact on die area of occurrence of this butterfly.
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| 44. |
- Freitas, André Victor Lucci, et al.
(författare)
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'Species' from two different butterfly genera combined into one : Description of a new genus of Euptychiina (Nymphalidae: Satyrinae) with unusually variable wing pattern
- 2016
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Ingår i: Revista Brasileira de Entomologia. - : FapUNIFESP (SciELO). - 0085-5626. ; 60:2, s. 157-165
-
Tidskriftsartikel (refereegranskat)abstract
- Sepona Freitas and Barbosa, gen. nov. is proposed for the Neotropical satyrine butterfly species Euptychia punctata Weymer, 1911 and its junior subjective synonyms Euptychia griseola Weymer, 1911 and Taygetis indecisa Ribeiro, 1931. The new genus has a distinctive wing pattern and shape of the valvae in the male genitalia, the latter being a unique autapomorphy within the subtribe Euptychiina. Based on molecular data, this genus is not sister to any other single euptychiine genus, instead appearing as the sister to all remaining genera in the Taygetis clade. The present paper illustrates the complexity of the taxonomy of Euptychiina, and the importance of using different sources of evidence in taxonomic studies.
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| 45. |
- Friberg, Magne, et al.
(författare)
-
Genetic differentiation and phylogeographic patterns in European populations of Leptidea sinapis and L. reali
-
Annan publikation (refereegranskat)abstract
- The direction of a coevolutionary interaction can differ between local populations as in the butterflies Leptidea sinapis and L. reali. The morphologically virtually identical sister-species have partitioned their niches differently in different parts of their distribution by shifting habitat specialist and generalist roles between different sympatric areas. Hence, a species that is a generalist in some areas can be a local specialist in others, and vice versa. We have sequenced the mitochondrial COI gene from specimens collected across Europe in order to (i) describe the between-species variation over a large area, (ii) identify possible glacial refugia and re-colonisation routes to obtain a phylogeographic hypothesis for explaining the geographic mosaic of niche separation and (iii) apply a population genetic approach to determine the level of intraspecific genetic differentiation. The results show evidence for species distinctiveness throughout Europe. Only small variation was found in L. reali, whereas the haplotype network of L. sinapis showed a deep division into two haplotype families of which one was restricted to Spain and the other was widespread over the continent (including Spain). The widespread haplotype family was divided into two common variants, one eastern and one western, each being surrounded by rare haplotypes. The both deep and shallow genetic differentiation implies that L. sinapis might have been divided into different refugia during several glaciations. Both species showed significant genetic differentiation in pairwise ФST, and as habitat generalist populations could differ significantly from other habitat generalist populations but not from habitat specialist populations, we conclude that this study supports that the geographic mosaic of niche separation is caused by local processes rather than common ancestry of local habitat generalists or specialists within each species
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| 46. |
- Friberg, Magne, et al.
(författare)
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Niche separation in space and time between two sympatric sister species—a case of ecological pleiotropy
- 2008
-
Ingår i: Evolutionary Ecology. - : Springer Science and Business Media LLC. - 0269-7653 .- 1573-8477.
-
Tidskriftsartikel (refereegranskat)abstract
- Abstract We investigate the niche separation in space and time between the Palearctic sister species Leptidea sinapis and L. reali (Lepidoptera, Pieridae) in central Sweden. Using field sampling, we show that L. reali is a habitat specialist confined to meadows, whereas L. sinapis is a habitat generalist also inhabiting forests. This difference in habitat utilization was corroborated by experimental release of laboratory-reared L. sinapis and L. reali in two adjacent forest and meadow habitats during their natural flight period; virtually all recaptured L. reali that were released in the forest were later caught in the meadow, whereas L. sinapis shifted equally often from meadow to forest as in the opposite direction. In the field, both species fly in May–June, but L. reali appears on average a week earlier in spring and has a substantial second generation in July, whereas L. sinapis is practically univoltine. When overwintered pupae were incubated under identical conditions in the laboratory, females did, however, not differ in phenology, and L. sinapis males actually emerged earlier than L. reali males. When larvae were reared at 23°C on the host plant Lotus corniculatus at a range of daylengths, both species produced a substantial proportion of directly developing individuals at an 18.5 h daylength or longer. When reared at 23°C and a 22 h daylength, L. reali showed an overall higher propensity to develop directly than L. sinapis on plant species originating from both the meadow and the forest habitat. Both Leptidea species showed a lower propensity to enter direct development on forest associated plants than on meadow associated plants. Hence, we suggest that the difference in phenology and voltinism between L. sinapis and L. reali is largely the result of environmentally implemented ecological pleiotropic effects caused by the between-species difference in habitat preference.
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| 47. |
- Fric, Zdenek F., et al.
(författare)
-
Molecular phylogeny and biogeography of the genus Symbrenthia (Lepidoptera, Nymphalidae) correlates with the past geography of the Oriental region
- 2022
-
Ingår i: Molecular Phylogenetics and Evolution. - : Elsevier BV. - 1055-7903. ; 177
-
Tidskriftsartikel (refereegranskat)abstract
- Jesters, butterflies in the genus Symbrenthia Hübner, 1819, comprise 14 species mainly distributed in the Oriental region. Although this genus has attracted the attention of many researchers in the past, its taxonomy and biogeographic history remain unclear. In this study, we investigate phylogenetic and biogeographic relationships inferred from one mitochondrial (COI) and two nuclear genes (ArgKin, wingless), using both likelihood and Bayesian approaches. With the exception of S. hippalus, which we find to be either sister to Mynes Boisduval, 1832 or sister to Symbrenthia + Mynes + Araschnia, all species of Symbrenthia form a single monophyletic group. We describe a new genus Mynbrenthia Fric & Rindos gen. nov. to accommodate the taxon hippalus. The genus Symbrenthia splits into four sub-groups, “Brensymthia” (with S. niphanda and S. sinoides), “hypselis” (with S. hypselis, S. brabira, S. leoparda and S. doni), “intricata” (with S. intricata and S. hypatia) and “hippoclus” group (including S. platena and a complex of S. hippoclus and S. lilaea). The genus probably originated in Sundaland or continental Asia during the Eocene. The history of the genus Symbrenthia was more influenced by dispersal events and then by subsequent vicariances. Whereas the “hypselis” group colonised the Indo-Australian Archipelago from the Asian continent, the “hippoclus” group dispersed to continental Asia from the Indo-Australian Archipelago.
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| 48. |
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| 49. |
- Garzón-Orduña, Ivonne J., et al.
(författare)
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Wing pattern diversity in Eunica butterflies (Nymphalidae: Biblidinae) : phylogenetic analysis implies decoupled adaptive trends in dorsal sexual dimorphism and ventral eyespot evolution
-
Ingår i: Cladistics. - 0748-3007.
-
Tidskriftsartikel (refereegranskat)abstract
- Butterfly eyespots are wing patterns reminiscent of vertebrate eyes, formed by concentric rings of contrastingly coloured scales. Eyespots are usually located close to the wing margin and often regarded as the single most conspicuous pattern element of butterfly wing colour displays. Recent efforts to understand the processes involved in the formation of eyespots have been driven mainly by evo-devo approaches focused on model species. However, patterns of change implied by phylogenetic relationships can also inform hypotheses about the underlying developmental mechanisms associated with the formation or disappearance of eyespots, and the limits of phenotypic diversity occurring in nature. Here we present a combined evidence phylogenetic hypothesis for the genus Eunica, a prominent member of diverse Neotropical butterfly communities, that features notable variation among species in eyespot patterns on the ventral hind wing surface. The data matrix consists of one mitochondrial gene region (COI), four nuclear gene regions (GAPDH, RPS5, EF1a and Wingless) and 68 morphological characters. A combined cladistic analysis with all the characters concatenated produced a single most parsimonious tree that, although fully resolved, includes many nodes with modest branch support. The phylogenetic hypothesis presented corroborates a previously proposed morphological trend leading to the loss of eyespots, together with an increase in the size of the conserved eyespots, relative to outgroup taxa. Furthermore, wing colour pattern dimorphism and the presence of androconia suggest that the most remarkable instances of sexual dimorphism are present in the species of Eunica with the most derived eyespot patterns, and are in most cases accompanied by autapomorphic combinations of scent scales and “hair pencils”. We discuss natural and sexual selection as potential adaptive explanations for dorsal and ventral wing patterns.
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| 50. |
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