| 1. |
- Erzurumluoglu, A. Mesut, et al.
(författare)
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Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci
- 2020
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Ingår i: Molecular Psychiatry. - : Nature Publishing Group. - 1359-4184 .- 1476-5578. ; 25:10, s. 2392-2409
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Tidskriftsartikel (refereegranskat)abstract
- Smoking is a major heritable and modifiable risk factor for many diseases, including cancer, common respiratory disorders and cardiovascular diseases. Fourteen genetic loci have previously been associated with smoking behaviour-related traits. We tested up to 235,116 single nucleotide variants (SNVs) on the exome-array for association with smoking initiation, cigarettes per day, pack-years, and smoking cessation in a fixed effects meta-analysis of up to 61 studies (up to 346,813 participants). In a subset of 112,811 participants, a further one million SNVs were also genotyped and tested for association with the four smoking behaviour traits. SNV-trait associations with P < 5 × 10-8 in either analysis were taken forward for replication in up to 275,596 independent participants from UK Biobank. Lastly, a meta-analysis of the discovery and replication studies was performed. Sixteen SNVs were associated with at least one of the smoking behaviour traits (P < 5 × 10-8) in the discovery samples. Ten novel SNVs, including rs12616219 near TMEM182, were followed-up and five of them (rs462779 in REV3L, rs12780116 in CNNM2, rs1190736 in GPR101, rs11539157 in PJA1, and rs12616219 near TMEM182) replicated at a Bonferroni significance threshold (P < 4.5 × 10-3) with consistent direction of effect. A further 35 SNVs were associated with smoking behaviour traits in the discovery plus replication meta-analysis (up to 622,409 participants) including a rare SNV, rs150493199, in CCDC141 and two low-frequency SNVs in CEP350 and HDGFRP2. Functional follow-up implied that decreased expression of REV3L may lower the probability of smoking initiation. The novel loci will facilitate understanding the genetic aetiology of smoking behaviour and may lead to the identification of potential drug targets for smoking prevention and/or cessation.
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| 2. |
- Arnott, Russell N., et al.
(författare)
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Artificially generated turbulence : a review of phycological nanocosm, microcosm, and mesocosm experiments
- 2021
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Ingår i: Hydrobiologia. - : Springer. - 0018-8158 .- 1573-5117. ; 848, s. 961-991
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Forskningsöversikt (refereegranskat)abstract
- Building on a summary of how turbulence influences biological systems, we reviewed key phytoplankton-turbulence laboratory experiments (after Peters and Redondo in Scientia Marina: Lectures on plankton and turbulence, International Centre for Coastal Resources, Barcelona, 1997) and Peters and Marrase (Marine Ecology Progress Series 205:291-306, 2000) to provide a current overview of artificial turbulence generation methods and quantification techniques. This review found that most phytoplankton studies using artificial turbulence feature some form of quantification of turbulence; it is recommended to use turbulent dissipation rates (epsilon) for consistency with physical oceanographic and limnological observations. Grid-generated turbulence is the dominant method used to generate artificial turbulence with most experiments providing quantified epsilon values. Couette cylinders are also commonly used due to the ease of quantification, albeit as shear rates not epsilon. Dinoflagellates were the primary phytoplanktonic group studied due to their propensity for forming harmful algal blooms (HAB) as well as their apparent sensitivity to turbulence. This study found that a majority of experimental setups are made from acrylate plastics that could emit toxins as these materials degrade under UV light. Furthermore, most cosm systems studied were not sufficiently large to accommodate the full range of turbulent length scales, omitting larger vertical overturns. Recognising that phytoplankton-turbulence interactions are extremely complex, the continued promotion of more interdisciplinary studies is recommended.
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| 3. |
- Cherif, Mehdi, et al.
(författare)
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Using convective mixing in mesocosms to study climate-driven shifts in phytoplankton community distributions
- 2023
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Ingår i: Frontiers in Marine Science. - : Frontiers Media S.A.. - 2296-7745. ; 10
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Tidskriftsartikel (refereegranskat)abstract
- With climate change predicted to alter water column stability and mixing across the world’s oceans, a mesocosm experiment was designed to ascertain how a natural phytoplankton community would respond to these changes. As a departure from other mesocosm experiments, we used heating and cooling to produce four different climate-inspired mixing scenarios ranging from well-mixed water columns representative of typical open turbulence (ϵ = 3 x 10-8 m2/s3) through to a quiescent water column with stable stratification (ϵ = 5 x 10-10 m2/s3). This method of turbulence generation is an improvement on previous techniques (e.g., grid, shaker, and aeration) which tend to produce excessive dissipation rates inconsistent with oceanic turbulence observations. Profiles of classical physical parameters used to describe turbulence and mixing (turbulent dissipation rate, buoyancy frequency, turbulent eddy diffusivity, Ozmidov scale) were representative of the profiles found in natural waters under similar mixing conditions. Chlorophyll-a profiles and cell enumeration showed a clear biological response to the different turbulence scenarios. However, the responses of specific phytoplankton groups (diatoms and dinoflagellates) did not conform to the usual expectations: diatoms are generally expected to thrive under convective, turbulent regimes, while dinoflagellates are expected to thrive in converse conditions, i.e., in stable, stratified conditions. Our results suggest that responses to mixing regimes are taxon-specific, with no overwhelming physical effect of the turbulence regime. Rather, each taxon seemed to very quickly reach a given vertical distribution that it managed to hold, whether actively or passively, with a high degree of success. Future studies on the effects of climate change on phytoplankton vertical distribution should thus focus on the factors and mechanisms that combine to determine the specific distribution of species within taxa. Our convection-based mesocosm approach, because it uses a primary physical force that generates turbulence in open waters, should prove a valuable tool in this endeavor.
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| 4. |
- Golub, Malgorzata, et al.
(författare)
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A framework for ensemble modelling of climate change impacts on lakes worldwide : the ISIMIP Lake Sector
- 2022
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Ingår i: Geoscientific Model Development. - : Copernicus Publications. - 1991-959X .- 1991-9603. ; 15:11, s. 4597-4623
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Tidskriftsartikel (refereegranskat)abstract
- Empirical evidence demonstrates that lakes and reservoirs are warming across the globe. Consequently, there is an increased need to project future changes in lake thermal structure and resulting changes in lake biogeochemistry in order to plan for the likely impacts. Previous studies of the impacts of climate change on lakes have often relied on a single model forced with limited scenario-driven projections of future climate for a relatively small number of lakes. As a result, our understanding of the effects of climate change on lakes is fragmentary, based on scattered studies using different data sources and modelling protocols, and mainly focused on individual lakes or lake regions. This has precluded identification of the main impacts of climate change on lakes at global and regional scales and has likely contributed to the lack of lake water quality considerations in policy-relevant documents, such as the Assessment Reports of the Intergovernmental Panel on Climate Change (IPCC). Here, we describe a simulation protocol developed by the Lake Sector of the Inter-Sectoral Impact Model Intercomparison Project (ISIMIP) for simulating climate change impacts on lakes using an ensemble of lake models and climate change scenarios for ISIMIP phases 2 and 3. The protocol prescribes lake simulations driven by climate forcing from gridded observations and different Earth system models under various representative greenhouse gas concentration pathways (RCPs), all consistently bias-corrected on a 0.5 degrees x 0.5 degrees global grid. In ISIMIP phase 2, 11 lake models were forced with these data to project the thermal structure of 62 well-studied lakes where data were available for calibration under historical conditions, and using uncalibrated models for 17 500 lakes defined for all global grid cells containing lakes. In ISIMIP phase 3, this approach was expanded to consider more lakes, more models, and more processes. The ISIMIP Lake Sector is the largest international effort to project future water temperature, thermal structure, and ice phenology of lakes at local and global scales and paves the way for future simulations of the impacts of climate change on water quality and biogeochemistry in lakes.
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| 5. |
- Lewis, Abigail S. L., et al.
(författare)
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Anoxia begets anoxia : A positive feedback to the deoxygenation of temperate lakes
- 2024
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Ingår i: Global Change Biology. - : John Wiley & Sons. - 1354-1013 .- 1365-2486. ; 30:1
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Tidskriftsartikel (refereegranskat)abstract
- Declining oxygen concentrations in the deep waters of lakes worldwide pose a pressing environmental and societal challenge. Existing theory suggests that low deep-water dissolved oxygen (DO) concentrations could trigger a positive feedback through which anoxia (i.e., very low DO) during a given summer begets increasingly severe occurrences of anoxia in following summers. Specifically, anoxic conditions can promote nutrient release from sediments, thereby stimulating phytoplankton growth, and subsequent phytoplankton decomposition can fuel heterotrophic respiration, resulting in increased spatial extent and duration of anoxia. However, while the individual relationships in this feedback are well established, to our knowledge, there has not been a systematic analysis within or across lakes that simultaneously demonstrates all of the mechanisms necessary to produce a positive feedback that reinforces anoxia. Here, we compiled data from 656 widespread temperate lakes and reservoirs to analyze the proposed anoxia begets anoxia feedback. Lakes in the dataset span a broad range of surface area (1–126,909 ha), maximum depth (6–370 m), and morphometry, with a median time-series duration of 30 years at each lake. Using linear mixed models, we found support for each of the positive feedback relationships between anoxia, phosphorus concentrations, chlorophyll a concentrations, and oxygen demand across the 656-lake dataset. Likewise, we found further support for these relationships by analyzing time-series data from individual lakes. Our results indicate that the strength of these feedback relationships may vary with lake-specific characteristics: For example, we found that surface phosphorus concentrations were more positively associated with chlorophyll a in high-phosphorus lakes, and oxygen demand had a stronger influence on the extent of anoxia in deep lakes. Taken together, these results support the existence of a positive feedback that could magnify the effects of climate change and other anthropogenic pressures driving the development of anoxia in lakes around the world.
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| 6. |
- Reinl, Kaitlin L., et al.
(författare)
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Blooms also like it cold
- 2023
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Ingår i: Limnology and Oceanography Letters. - : John Wiley & Sons. - 2378-2242. ; 8:4, s. 546-564
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Forskningsöversikt (refereegranskat)abstract
- Cyanobacterial blooms have substantial direct and indirect negative impacts on freshwater ecosystems including releasing toxins, blocking light needed by other organisms, and depleting oxygen. There is growing concern over the potential for climate change to promote cyanobacterial blooms, as the positive effects of increasing lake surface temperature on cyanobacterial growth are well documented in the literature; however, there is increasing evidence that cyanobacterial blooms are also being initiated and persisting in relatively cold-water temperatures (< 15 °C), including ice-covered conditions. In this work, we provide evidence of freshwater cold-water cyanobacterial blooms, review abiotic drivers and physiological adaptations leading to these blooms, offer a typology of these lesser-studied cold-water cyanobacterial blooms, and discuss their occurrence under changing climate conditions.
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| 7. |
- Sharma, Sapna, et al.
(författare)
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Long-term ice phenology records spanning up to 578 years for 78 lakes around the Northern Hemisphere
- 2022
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Ingår i: Scientific Data. - : Springer Nature. - 2052-4463. ; 9:1
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Tidskriftsartikel (refereegranskat)abstract
- In recent decades, lakes have experienced unprecedented ice loss with widespread ramifications for winter ecological processes. The rapid loss of ice, resurgence of winter biology, and proliferation of remote sensing technologies, presents a unique opportunity to integrate disciplines to further understand the broad spatial and temporal patterns in ice loss and its consequences. Here, we summarize ice phenology records for 78 lakes in 12 countries across North America, Europe, and Asia to permit the inclusion and harmonization of in situ ice phenology observations in future interdisciplinary studies. These ice records represent some of the longest climate observations directly collected by people. We highlight the importance of applying the same definition of ice-on and ice-off within a lake across the time-series, regardless of how the ice is observed, to broaden our understanding of ice loss across vast spatial and temporal scales.
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| 8. |
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| 9. |
- Weyhenmeyer, Gesa A., et al.
(författare)
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Towards critical white ice conditions in lakes under global warming.
- 2022
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Ingår i: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- The quality of lake ice is of uppermost importance for ice safety and under-ice ecology, but its temporal and spatial variability is largely unknown. Here we conducted a coordinated lake ice quality sampling campaign across the Northern Hemisphere during one of the warmest winters since 1880 and show that lake ice during 2020/2021 commonly consisted of unstable white ice, at times contributing up to 100% to the total ice thickness. We observed that white ice increased over the winter season, becoming thickest and constituting the largest proportion of the ice layer towards the end of the ice cover season when fatal winter drownings occur most often and light limits the growth and reproduction of primary producers. We attribute the dominance of white ice before ice-off to air temperatures varying around the freezing point, a condition which occurs more frequently during warmer winters. Thus, under continued global warming, the prevalence of white ice is likely to substantially increase during the critical period before ice-off, for which we adjusted commonly used equations for human ice safety and light transmittance through ice.
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