| 1. |
- Mikkelsen, Tarjei S, et al.
(författare)
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Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7141, s. 167-177
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Tidskriftsartikel (refereegranskat)abstract
- We report a high-quality draft of the genome sequence of the grey, short-tailed opossum (Monodelphis domestica). As the first metatherian ('marsupial') species to be sequenced, the opossum provides a unique perspective on the organization and evolution of mammalian genomes. Distinctive features of the opossum chromosomes provide support for recent theories about genome evolution and function, including a strong influence of biased gene conversion on nucleotide sequence composition, and a relationship between chromosomal characteristics and X chromosome inactivation. Comparison of opossum and eutherian genomes also reveals a sharp difference in evolutionary innovation between protein-coding and non-coding functional elements. True innovation in protein-coding genes seems to be relatively rare, with lineage-specific differences being largely due to diversification and rapid turnover in gene families involved in environmental interactions. In contrast, about 20% of eutherian conserved non-coding elements (CNEs) are recent inventions that postdate the divergence of Eutheria and Metatheria. A substantial proportion of these eutherian-specific CNEs arose from sequence inserted by transposable elements, pointing to transposons as a major creative force in the evolution of mammalian gene regulation.
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| 2. |
- Bergues, B., et al.
(författare)
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Nonlinear interaction of 100-eV attosecond XUV-pulses with core electrons in Xenon
- 2018
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Ingår i: Optics InfoBase Conference Papers. - : Optica Publishing Group. - 9781557528209
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Konferensbidrag (refereegranskat)abstract
- We demonstrate multiphoton ionization of inner-shell electrons in Xenon with 100-eV attosecond pulses. This was achieved with a novel XUV source based on high-harmonic generation in the gas phase driven with multi-TW few-cycle laser pulses.
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| 3. |
- Bergues, B., et al.
(författare)
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Tabletop nonlinear optics in the 100-eV spectral region
- 2018
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Ingår i: Optica. - : Optical Society of America. - 2334-2536. ; 5:3, s. 237-242
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Tidskriftsartikel (refereegranskat)abstract
- Nonlinear light-matter interactions in the extreme ultraviolet (XUV) are a prerequisite to perform XUV-pump/XUV-probe spectroscopy of core electrons. Such interactions are now routinely investigated at free-electron laser (FEL) facilities. Yet, electron dynamics are often too fast to be captured with the femtosecond resolution of state-of-the-art FELs. Attosecond pulses from laser-driven XUV-sources offer the necessary temporal resolution. However, intense attosecond pulses supporting nonlinear processes have only been available for photon energy below 50 eV, precluding XUV-pump/XUV-probe investigation of typical inner-shell processes. Here, we surpass this limitation by demonstrating two-photon absorption from inner electronic shells of xenon at photon energies around 93 eV and 115 eV. This advance opens the door for attosecond real-time observation of nonlinear electron dynamics deep inside atoms.
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| 4. |
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| 5. |
- Das, Radhika, et al.
(författare)
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Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica
- 2012
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Ingår i: BMC Genomics. - : Springer Science and Business Media LLC. - 1471-2164. ; 13, s. 394-
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Tidskriftsartikel (refereegranskat)abstract
- Background: Genomic imprinting is an epigenetic phenomenon resulting in parent-of-origin specific monoallelic gene expression. It is postulated to have evolved in placental mammals to modulate intrauterine resource allocation to the offspring. In this study, we determined the imprint status of metatherian orthologues of eutherian imprinted genes. Results: L3MBTL and HTR2A were shown to be imprinted in Monodelphis domestica (the gray short-tailed opossum). MEST expressed a monoallelic and a biallelic transcript, as in eutherians. In contrast, IMPACT, COPG2, and PLAGL1 were not imprinted in the opossum. Differentially methylated regions (DMRs) involved in regulating imprinting in eutherians were not found at any of the new imprinted loci in the opossum. Interestingly, a novel DMR was identified in intron 11 of the imprinted IGF2R gene, but this was not conserved in eutherians. The promoter regions of the imprinted genes in the opossum were enriched for the activating histone modification H3 Lysine 4 dimethylation. Conclusions: The phenomenon of genomic imprinting is conserved in Therians, but the marked difference in the number and location of imprinted genes and DMRs between metatherians and eutherians indicates that imprinting is not fully conserved between the two Therian infra-classes. The identification of a novel DMR at a non-conserved location as well as the first demonstration of histone modifications at imprinted loci in the opossum suggest that genomic imprinting may have evolved in a common ancestor of these two Therian infra-classes with subsequent divergence of regulatory mechanisms in the two lineages.
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| 6. |
- Major, B., et al.
(författare)
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Investigation of high harmonic generation using a high-power, 5-fs laser in a loose-focusing geometry
- 2017
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Ingår i: 2017 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC). - : IEEE. - 9781509067367
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Konferensbidrag (refereegranskat)abstract
- Summary form only given. Since its first observation almost three decades ago high-order harmonic generation (HHG) in gases became a reliable source of extreme ultraviolet (XUV) pulses, which gave the possibility to study electronic processes on their natural timescale [1, 2]. While the main building blocks of the experimental setups for gas HHG are the same in almost all cases, the focusing or medium geometry varies from realization to realization based on, for example, the available laser power [3, 4].In this work we study HHG in a loose focusing geometry by focusing a ~50-mm diameter (FWHM) beam with a mirror of 16-m focal length (f-number ~320). The main subject of this analysis is to compare low pressure - long interaction length (few millibars and tens of centimeters) with high pressure - short medium (hundreds of millibars and a few millimeters) scenarios and understand the underlying reasons for the observed XUV radiation parameters. The experiments are carried out with on target 35 mJ, sub-5 fs, 740 nm central wavelength pulses provided by an optical parametric synthesizer [5], producing high-energy pulses at the 100 eV spectral region [6]. The theoretical analysis is performed by simulation code based on a three-dimensional nonadiabatic model [7,8]. The good agreement between the experimental and simulation data (see Fig. 1) allows us to use the theoretical findings to gain better insight on the exact phase-matching processes providing the observed features. This detailed description is used to draw general conclusions of the high-harmonic generation process.
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| 7. |
- Power, Daniel, et al.
(författare)
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Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone : Use of mobile phone data
- 2018
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Ingår i: International Journal of Epidemiology. - : Oxford University Press (OUP): Policy B - Oxford Open Option D. - 1464-3685 .- 0300-5771. ; 47:5, s. 1562-1570
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Tidskriftsartikel (refereegranskat)abstract
- Travel restrictions were implementeded on an unprecedented scale in 2015 in Sierra Leone to contain and eliminate Ebola virus disease. However, the impact of epidemic travel restrictions on mobility itself remains difficult to measure with traditional methods. New ‘big data’ approaches using mobile phone data can provide, in near real-time, the type of information needed to guide and evaluate control measures.We analysed anonymous mobile phone call detail records (CDRs) from a leading operator in Sierra Leone between 20 March and 1 July in 2015. We used an anomaly detection algorithm to assess changes in travel during a national ‘stay at home’ lockdown from 27 to 29 March. To measure the magnitude of these changes and to assess effect modification by region and historical Ebola burden, we performed a time series analysis and a crossover analysis.Routinely collected mobile phone data revealed a dramatic reduction in human mobility during a 3-day lockdown in Sierra Leone. The number of individuals relocating between chiefdoms decreased by 31% within 15 km, by 46% for 15–30 km and by 76% for distances greater than 30 km. This effect was highly heterogeneous in space, with higher impact in regions with higher Ebola incidence. Travel quickly returned to normal patterns after the restrictions were lifted.The effects of travel restrictions on mobility can be large, targeted and measurable in near real-time. With appropriate anonymization protocols, mobile phone data should play a central role in guiding and monitoring interventions for epidemic containment.
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| 8. |
- Rivas, D. E., et al.
(författare)
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Next Generation Driver for Attosecond and Laser-plasma Physics
- 2017
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Ingår i: Scientific Reports. - : Nature Publishing Group. - 2045-2322. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- The observation and manipulation of electron dynamics in matter call for attosecond light pulses, routinely available from high-order harmonic generation driven by few-femtosecond lasers. However, the energy limitation of these lasers supports only weak sources and correspondingly linear attosecond studies. Here we report on an optical parametric synthesizer designed for nonlinear attosecond optics and relativistic laser-plasma physics. This synthesizer uniquely combines ultra-relativistic focused intensities of about 10(20)W/cm(2) with a pulse duration of sub-two carrier-wave cycles. The coherent combination of two sequentially amplified and complementary spectral ranges yields sub-5-fs pulses with multi-TW peak power. The application of this source allows the generation of a broad spectral continuum at 100-eV photon energy in gases as well as high-order harmonics in relativistic plasmas. Unprecedented spatio-temporal confinement of light now permits the investigation of electric-field-driven electron phenomena in the relativistic regime and ultimately the rise of next-generation intense isolated attosecond sources.
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