| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Kristanl, Matej, et al.
(författare)
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The Seventh Visual Object Tracking VOT2019 Challenge Results
- 2019
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Ingår i: 2019 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW). - : IEEE COMPUTER SOC. - 9781728150239 ; , s. 2206-2241
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Konferensbidrag (refereegranskat)abstract
- The Visual Object Tracking challenge VOT2019 is the seventh annual tracker benchmarking activity organized by the VOT initiative. Results of 81 trackers are presented; many are state-of-the-art trackers published at major computer vision conferences or in journals in the recent years. The evaluation included the standard VOT and other popular methodologies for short-term tracking analysis as well as the standard VOT methodology for long-term tracking analysis. The VOT2019 challenge was composed of five challenges focusing on different tracking domains: (i) VOT-ST2019 challenge focused on short-term tracking in RGB, (ii) VOT-RT2019 challenge focused on "real-time" short-term tracking in RGB, (iii) VOT-LT2019 focused on long-term tracking namely coping with target disappearance and reappearance. Two new challenges have been introduced: (iv) VOT-RGBT2019 challenge focused on short-term tracking in RGB and thermal imagery and (v) VOT-RGBD2019 challenge focused on long-term tracking in RGB and depth imagery. The VOT-ST2019, VOT-RT2019 and VOT-LT2019 datasets were refreshed while new datasets were introduced for VOT-RGBT2019 and VOT-RGBD2019. The VOT toolkit has been updated to support both standard short-term, long-term tracking and tracking with multi-channel imagery. Performance of the tested trackers typically by far exceeds standard baselines. The source code for most of the trackers is publicly available from the VOT page. The dataset, the evaluation kit and the results are publicly available at the challenge website(1).
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| 3. |
- Li, Wenxiong, et al.
(författare)
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Can the Helium-detonation Model Explain the Observed Diversity of Type Ia Supernovae?
- 2021
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 906:2
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Tidskriftsartikel (refereegranskat)abstract
- We study a sample of 16 Type Ia supernovae (SNe Ia) having both spectroscopic and photometric observations within 2-3 days after the first light. The early B - V colors of such a sample tend to show a continuous distribution. For objects with normal ejecta velocity (NV), the C ii lambda 6580 feature is always visible in the early spectra, while it is absent or very weak in the high-velocity (HV) counterpart. Moreover, the velocities of the detached high-velocity features (HVFs) of the Ca II near-IR triplet (CaIR3) above the photosphere are found to be much higher in HV objects than in NV objects, with typical values exceeding 30,000 km s(-1) at 2-3 days. We further analyze the relation between the velocity shift of late-time [Fe II] lines (v([Fe II])) and host galaxy mass. We find that all HV objects have redshifted v([Fe II]), while NV objects have both blue- and redshifted v([Fe II]). It is interesting to point out that the objects with redshifted v([Fe II]) are all located in massive galaxies, implying that HV and a portion of NV objects may have similar progenitor metallicities and explosion mechanisms. We propose that, with a geometric/projected effect, the He-detonation model may account for the similarity in birthplace environment and the differences seen in some SNe Ia, including B - V colors, C II features, CaIR3 HVFs at early times, and v([Fe II]) in the nebular phase. Nevertheless, some features predicted by He-detonation simulation, such as the rapidly decreasing light curve, deviate from the observations, and some NV objects with blueshifted nebular v([Fe II]) may involve other explosion mechanisms.
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| 4. |
- Lin, Weili, et al.
(författare)
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A superluminous supernova lightened by collisions with pulsational pair-instability shells
- 2023
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Ingår i: Nature Astronomy. - 2397-3366. ; 7:7, s. 779-789
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Tidskriftsartikel (refereegranskat)abstract
- Superluminous supernovae are among the most energetic stellar explosions in the Universe, but their energy sources remain an open question. Here we present long-term observations of one of the closest examples of the hydrogen-poor superluminous supernovae subclass SLSNe-I, supernova SN 2017egm, revealing the most complicated known luminosity evolution of SLSNe-I. Three distinct post-peak bumps were recorded in its light curve collected at about 100–350 days after maximum brightness, challenging current popular power models such as magnetar, fallback accretion, and interaction between ejecta and a circumstellar shell. However, the complex light curve can be well modelled by successive interactions with multiple circumstellar shells with a total mass of about 6.8–7.7 M⊙. In this scenario, large energy deposition from interaction-induced reverse shocks results in ionization of neutral oxygen in the supernova ejecta and hence a much lower nebular-phase line ratio of [O I] λ6,300/([Ca II] + [O II]) λ7,300 (~0.2) compared with that derived for other superluminous and normal stripped-envelope supernovae. The pre-existing multiple shells indicate that the progenitor of SN 2017egm experienced pulsational mass ejections triggered by pair instability within 2 years before explosion, in robust agreement with theoretical predictions for a pre-pulsation helium-core mass of 48–51 M⊙.
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| 5. |
- Li, Wenxiong, et al.
(författare)
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Observations of Type Ia Supernova 2014J for Nearly 900 Days and Constraints on Its Progenitor System
- 2019
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 882:1
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Tidskriftsartikel (refereegranskat)abstract
- We present extensive ground-based and Hubble Space Telescope (HST) photometry of the highly reddened, very nearby SN Ia 2014J in M82, covering the phases from 9 days before to about 900 days after the B-band maximum. SN 2014J is similar to other normal SNe Ia near the maximum light, but it shows flux excess in the B band in the early nebular phase. This excess flux emission can be due to light scattering by some structures of circum stellar materials located at a few 10(17) cm, consistent with a single-degenerate progenitor system or a double-degenerate progenitor system with mass outflows in the final evolution or magnetically driven winds around the binary system. At t similar to +300 to similar to +500 days past the B-band maximum, the light curve of SN 2014J shows a faster decline relative to the Ni-56 decay. That feature can be attributed to the significant weakening of the emission features around [Fe III] lambda 4700 and [Fe II] lambda 5200 rather than the positron escape, as previously suggested. Analysis of the HST images taken at t > 600 days confirms that the luminosity of SN 2014J maintains a flat evolution at the very late phase. Fitting the late-time pseudobolometric light curve with radioactive decay of Ni-56, Ni-57, and Fe-55 isotopes, we obtain the mass ratio Ni-57/Ni-56 as 0.035 +/- 0.011, which is consistent with the corresponding value predicted from the 2D and 3D delayed-detonation models. Combined with early-time analysis, we propose that delayed detonation through the single-degenerate scenario is most likely favored for SN 2014J.
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| 6. |
- Hou, Meijun, et al.
(författare)
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Human dopaminergic system in the exercise-cognition link
- 2024
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Ingår i: Trends in Molecular Medicine. - : Elsevier. - 1471-4914 .- 1471-499X. ; 30:8, s. 708-712
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Tidskriftsartikel (refereegranskat)abstract
- While the dopaminergic system is important for cognitive processes, it is also sensitive to the influence of physical activity (PA). We summarize current evidence on whether PA-related changes in the human dopaminergic system are associated with alterations in cognitive performance, discuss recent advances, and highlight challenges and opportunities for future research.
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| 7. |
- Lin, Zhenquan, et al.
(författare)
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Characterization of cross-species transcription and splicing from Penicillium to Saccharomyces cerevisiae
- 2021
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Ingår i: Journal of Industrial Microbiology and Biotechnology. - : Oxford University Press (OUP). - 1367-5435 .- 1476-5535. ; 48:9-10
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Tidskriftsartikel (refereegranskat)abstract
- Heterologous expression of eukaryotic gene clusters in yeast has been widely used for producing high-value chemicals and bioactive secondary metabolites. However, eukaryotic transcription cis-elements are still undercharacterized, and the cross-species expression mechanism remains poorly understood. Here we used the whole expression unit (including original promoter, terminator, and open reading frame with introns) of orotidine 5'-monophosphate decarboxylases from 14 Penicillium species as a showcase, and analyzed their cross-species expression in Saccharomyces cerevisiae. We found that pyrG promoters from the Penicillium species could drive URA3 expression in yeast, and that inefficient cross-species splicing of Penicillium introns might result in weak cross-species expression. Thus, this study demonstrates cross-species expression from Penicillium to yeast, and sheds light on the opportunities and challenges of cross-species expression of fungi expression units and gene clusters in yeast without refactoring for novel natural product discovery.
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| 8. |
- Yu, Senbin, et al.
(författare)
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基于旋流火焰根部熄火现象的FGM模型研究
- 2020
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Ingår i: Ranshao Kexue Yu Jishu/Journal of Combustion Science and Technology. - 1006-8740. ; 26:4, s. 301-309
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Tidskriftsartikel (refereegranskat)abstract
- A series of experimental measurements on a prototype premixed swirl burner with complex geometry were carried out using CH2O/OH-PLIF. FGM method(SFGM)taking account of strain rate was developed to study two modes of premixed swirl flame, one stabilized and the other close to blown-off flame under the same Reynolds number(Re=10000). The SFGM model in this work is related to a reaction factor, which controls the source reaction rate directly without extra dimension extension of strain rate, and thus this method could save considerable calculation time. By comparing the experimental and numerical results(OH and CH2O×OH distributions), it is clearly found that SFGM coupled with LES can capture much better results than the FGM model without considering strain rate. Specifically, the SFGM model can predict the flame structure correctly, e.g. no attached flame survives near the premixed tube exit compared with the FGM model in which the flame still survives, and the close to blow-off flame has a greater lift-off height than the stabilized flame. In addition, turbulent flame speed is proportional to turbulent fluctuation speed. The edge of main flame front is revealed to be determined jointly by the flow velocity expanding downstream and the main turbulent flame(in the CRZ)propagation velocity propagating upstream. When the equivalence ratio is decreased to the flammability limit, the reactants in the CRZ are diluted by the leaner mixtures, leading to the breaking of contact flame into smaller flame kernels. Moreover, the turbulent flame speed declines with the decreasing flame temperature while the flow speed is kept fixed, resulting in the flame front propagating downstream away from CRZ and finally blowing off.
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