| 1. |
- Davies, Neil, et al.
(författare)
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The founding charter of the Genomic Observatories Network
- 2014
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Ingår i: GigaScience. - 2047-217X. ; 3:2
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Tidskriftsartikel (refereegranskat)abstract
- Abstract The co-authors of this paper hereby state their intention to work together to launch the Genomic Observatories Network (GOs Network) for which this document will serve as its Founding Charter. We define a Genomic Observatory as an ecosystem and/or site subject to long-term scientific research, including (but not limited to) the sustained study of genomic biodiversity from single-celled microbes to multicellular organisms.An international group of 64 scientists first published the call for a global network of Genomic Observatories in January 2012. The vision for such a network was expanded in a subsequent paper and developed over a series of meetings in Bremen (Germany), Shenzhen (China), Moorea (French Polynesia), Oxford (UK), Pacific Grove (California, USA), Washington (DC, USA), and London (UK). While this community-building process continues, here we express our mutual intent to establish the GOs Network formally, and to describe our shared vision for its future. The views expressed here are ours alone as individual scientists, and do not necessarily represent those of the institutions with which we are affiliated.
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| 2. |
- Degerlund, Maria, et al.
(författare)
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Functional diversity in cryptic species of Chaetoceros socialis Lauder (Bacillariophyceae)
- 2012
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Ingår i: Journal of Plankton Research. - : Oxford University Press. - 0142-7873 .- 1464-3774. ; 34:5, s. 416-431
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Tidskriftsartikel (refereegranskat)abstract
- The cosmopolitan distribution of the marine planktonic diatom Chaetoceros socialis Lauder is generally interpreted as a case of wide ecological plasticity. However, cryptic diversity has recently been observed within this taxon and this genetic diversity could extend to phenotypic differences between allopatric populations. Monoclonal strains of C. socialis isolated from NE Atlantic/Arctic and Tyrrhenian Sea waters were cultivated at 2.5, 8 and 13°C, and analysed for morphological, phylogenetic (LSU rRNA gene) and physiological (growth rate, photosynthetic yield) traits. The molecular analysis indicated an unequivocal divergence between the southern and the northern strains. Clear differences in spore morphology between the two groups were also observed, despite their morphological similarity in vegetative form. The physiological data demonstrated a functional partition between the northern and southern strains. The northern strains showed significantly higher growth rates than the southern ones at the lower temperatures, and vice versa at 13°C. Differences between the groups were also observed in the photosynthetic yields. These results reveal the expression of allopatric speciation in several phenotypic characters, providing a functional dimension to the cryptic, or rather pseudo-cryptic, diversity observed within C. socialis. We believe that such an integrated approach is useful for robust taxonomic and functional delimitations of presumed cosmopolitan microorganisms.
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| 3. |
- Huseby, Siv, et al.
(författare)
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Metabolic fingerprinting reveals differences between northern and southern strains of the cryptic diatom Chaetoceros socialis
- 2012
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Ingår i: European journal of phycology. - : Taylor & Francis. - 0967-0262 .- 1469-4433. ; 47:4, s. 480-489
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Tidskriftsartikel (refereegranskat)abstract
- Morphology and molecular phylogeny constitute the structural elements of diatom taxonomy. These approaches do not, however, give information on the functioning of taxa. Additional methods to serve a more integrated and wide-ranging taxonomy have therefore been called for. Metabolic fingerprinting is one approach used within the field of metabolomics, often applied in classification of samples. Here we apply metabolic fingerprinting in a taxonomic study of a cryptic diatom species. Strains of the cosmopolitan diatom Chaetoceros socialis from two geographical areas; the north-east Atlantic and Arctic and the Gulf of Naples, were cultivated at three different temperatures; 2.5, 8 and 13°C. The strains from the two different geographical areas exhibited different growth rates as well as different photosynthetic efficiencies. Algal extracts, collected at the end of the growth experiments, were analysed by Ultra-Performance Liquid Chromatography High Resolution Mass Spectrometry. The two groups of strains were separated by principal component analysis of their metabolic fingerprints. Analysis of the data revealed both qualitative and quantitative differences in metabolite markers. These phenotypic differences reinforce differences also found for morphology, phylogenetic markers and growth rates, and point at different adaptive characteristics in organisms living under different temperature regimes.
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| 6. |
- Muelbert, Jose H., et al.
(författare)
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ILTER : The International Long-Term Ecological Research Network as a Platform for Global Coastal and Ocean Observation
- 2019
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Ingår i: Frontiers in Marine Science. - : Frontiers Media S.A.. - 2296-7745. ; 6
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Forskningsöversikt (refereegranskat)abstract
- Understanding the threats to global biodiversity and ecosystem services posed by human impacts on coastal and marine environments requires the establishment and maintenance of ecological observatories that integrate the biological, physical, geological, and biogeochemical aspects of ecosystems. This is crucial to provide scientists and stakeholders with the support and knowledge necessary to quantify environmental change and its impact on the sustainable use of the seas and coasts. In this paper, we explore the potential for the coastal and marine components of the International Long-Term Ecological Research Network (ILTER) to fill this need for integrated global observation, and highlight how ecological observations are necessary to address the challenges posed by climate change and evolving human needs and stressors within the coastal zone. The ILTER is a global network encompassing 44 countries and 700 research sites in a variety of ecosystems across the planet, more than 100 of which are located in coastal and marine environments (ILTER-CMS). While most of the ILTER-CMS were established after the year 2000, in some cases they date back to the early 1900s. At ILTER sites, a broad variety of abiotic and biotic variables are measured, which may feed into other global initiatives. The ILTER community has produced tools to harmonize and compare measurements and methods, allowing for data integration workflows and analyses between and within individual ILTER sites. After a brief historical overview of ILTER, with emphasis on the marine component, we analyze the potential contribution of the ILTER-CMS to global coastal and ocean observation, adopting the "Strength, Weakness, Opportunity and Threats (SWOT)" approach. We also identify ways in which the in situ parameters collected at ILTER sites currently fit within the Essential Ocean Variables framework (as proposed by the Framework for Ocean Observation recommendations) and provide insights on the use of new technology in long-term studies. Final recommendations point at the need to further develop observational activities at LTER sites and improve coordination among them and with external related initiatives in order to maximize their exploitation and address present and future challenges in ocean observations.
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