| 11. |
- Bergström, Anders, et al.
(författare)
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Grey wolf genomic history reveals a dual ancestry of dogs
- 2022
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 607:7918, s. 313-320
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Tidskriftsartikel (refereegranskat)abstract
- The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and they remained widespread throughout the last Ice Age when many other large mammal species went extinct. Little is known, however, about the history and possible extinction of past wolf populations or when and where the wolf progenitors of the present-day dog lineage (Canis familiaris) lived. Here we analysed 72 ancient wolf genomes spanning the last 100,000 years from Europe, Siberia and North America. We found that wolf populations were highly connected throughout the Late Pleistocene, with levels of differentiation an order of magnitude lower than they are today. This population connectivity allowed us to detect natural selection across the time series, including rapid fixation of mutations in the gene IFT88 40,000–30,000 years ago. We show that dogs are overall more closely related to ancient wolves from eastern Eurasia than to those from western Eurasia, suggesting a domestication process in the east. However, we also found that dogs in the Near East and Africa derive up to half of their ancestry from a distinct population related to modern southwest Eurasian wolves, reflecting either an independent domestication process or admixture from local wolves. None of the analysed ancient wolf genomes is a direct match for either of these dog ancestries, meaning that the exact progenitor populations remain to be located.
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| 12. |
- Pankratov, Andrey L., et al.
(författare)
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Approaching microwave photon sensitivity with Al Josephson junctions
- 2022
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Ingår i: Beilstein Journal of Nanotechnology. - : Beilstein Institut. - 2190-4286. ; 13, s. 582-589
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Tidskriftsartikel (refereegranskat)abstract
- Here, we experimentally test the applicability of an aluminium Josephson junction of a few micrometers size as a single photon counter in the microwave frequency range. We have measured the switching from the superconducting to the resistive state through the absorption of 10 GHz photons. The dependence of the switching probability on the signal power suggests that the switching is initiated by the simultaneous absorption of three and more photons, with a dark count time above 0.01 s.
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| 13. |
- Pimanov, D. A., et al.
(författare)
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Efficiency of electron cooling in cold-electron bolometers with traps
- 2022
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Ingår i: Beilstein Journal of Nanotechnology. - : Beilstein Institut. - 2190-4286. ; 13, s. 896-901
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Tidskriftsartikel (refereegranskat)abstract
- Electron on-chip cooling from the base temperature of 300 mK is very important for highly sensitive detectors operating in space due to problems of dilution fridges at low gravity. Electron cooling is also important for ground-based telescopes equipped with 3He cryostats being able to function at any operating angle. This work is aimed at the investigation of electron cooling in the low -temperature range. New samples of cold-electron bolometers with traps and hybrid superconducting/ferromagnetic absorbers have shown a temperature reduction of the electrons in the refrigerator junctions from 300 to 82 mK, from 200 to 33 mK, and from 100 to 25 mK in the idle regime without optical power load. The electron temperature was determined by solving heat balance equa-tions with account of the leakage current, sixth power of temperature in the whole temperature range, and the Andreev current using numerical methods and an automatic fit algorithm.
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| 14. |
- Putintseva, Yuliya A., et al.
(författare)
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Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome
- 2020
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Ingår i: BMC Genomics. - : BMC. - 1471-2164. ; 21:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: Plant mitochondrial genomes (mitogenomes) can be structurally complex while their size can vary from similar to 222 Kbp inBrassica napusto 11.3 Mbp inSilene conica. To date, in comparison with the number of plant species, only a few plant mitogenomes have been sequenced and released, particularly for conifers (the Pinaceae family). Conifers cover an ancient group of land plants that includes about 600 species, and which are of great ecological and economical value. Among them, Siberian larch (Larix sibiricaLedeb.) represents one of the keystone species in Siberian boreal forests. Yet, despite its importance for evolutionary and population studies, the mitogenome of Siberian larch has not yet been assembled and studied. Results: Two sources of DNA sequences were used to search for mitochondrial DNA (mtDNA) sequences: mtDNA enriched samples and nucleotide reads generated in the de novo whole genome sequencing project, respectively. The assembly of the Siberian larch mitogenome contained nine contigs, with the shortest and the largest contigs being 24,767 bp and 4,008,762 bp, respectively. The total size of the genome was estimated at 11.7 Mbp. In total, 40 protein-coding, 34 tRNA, and 3 rRNA genes and numerous repetitive elements (REs) were annotated in this mitogenome. In total, 864 C-to-U RNA editing sites were found for 38 out of 40 protein-coding genes. The immense size of this genome, currently the largest reported, can be partly explained by variable numbers of mobile genetic elements, and introns, but unlikely by plasmid-related sequences. We found few plasmid-like insertions representing only 0.11% of the entire Siberian larch mitogenome. Conclusions: Our study showed that the size of the Siberian larch mitogenome is much larger than in other so far studied Gymnosperms, and in the same range as for the annual flowering plantSilene conica(11.3 Mbp). Similar to other species, the Siberian larch mitogenome contains relatively few genes, and despite its huge size, the repeated and low complexity regions cover only 14.46% of the mitogenome sequence.
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| 15. |
- V. Chiginev, Alexander, et al.
(författare)
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Numerical modeling of a multi-frequency receiving system based on an array of dipole antennas for LSPE-SWIPE
- 2022
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Ingår i: Beilstein Journal of Nanotechnology. - : Beilstein Institut. - 2190-4286. ; 13, s. 865-872
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Tidskriftsartikel (refereegranskat)abstract
- Here we present the results of a numerical modeling of mode composition in the constriction of the Large Scale Polarization Explorer-Short-Wavelength Instrument for the Polarization Explorer (LSPE-SWIPE) back-to-back horn. These results are used for calculating the frequency response of arrays of planar dipole antennas with cold-electron bolometers for 145, 210, and 240 GHz frequencies. For the main frequency channel (i.e., 145 GHz) we have a 45 GHz bandwidth. For the auxiliary frequency channels (i.e., 210 and 240 GHz) placed on the same substrate, we have bandwidths of 26 and 38 GHz, respectively. We performed some op-timizations for cold-electron bolometers to achieve a photon noise-equivalent power of 1.1 x 10-16 W/Hz1/2. This was achieved by replacing one of two superconductor-insulator-normal tunnel junctions with a superconductor-normal metal contact.
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| 16. |
- Revin, Leonid S., et al.
(författare)
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Measurements of dichroic bow-tie antenna arrays with integrated cold-electron bolometers using YBCO oscillators
- 2024
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Ingår i: Beilstein Journal of Nanotechnology. - 2190-4286. ; 15, s. 26-36
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Tidskriftsartikel (refereegranskat)abstract
- We consider properties of dichroic antenna arrays on a silicon substrate with integrated cold-electron bolometers to detect radiation at frequencies of 210 and 240 GHz. This frequency range is widely used in cosmic microwave background experiments in space, balloon, and ground-based missions such as BICEP Array, LSPE, LiteBIRD, QUBIC, Simons Observatory, and AliCPT. As a direct radiation detector, we use cold-electron bolometers, which have high sensitivity and a wide operating frequency range, as well as immunity to spurious cosmic rays. Their other advantages are the compact size of the order of a few micrometers and the effect of direct electron cooling, which can improve sensitivity in typical closed-loop cycle 3He cryostats for space applications. We study a novel concept of cold-electron bolometers with two SIN tunnel junctions and one SN contact. The amplitude-frequency characteristics measured with YBCO Josephson Junction oscillators show narrow peaks at 205 GHz for the 210 GHz array and at 225 GHz for the 240 GHz array; the separation of these two frequency bands is clearly visible. The noise equivalent power level at an operating point in the current bias mode is 5 x 10-16 W/root Hz.
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| 17. |
- Richtman Feuerborn, Tatiana, et al.
(författare)
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Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal
- 2021
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 118:39
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Tidskriftsartikel (refereegranskat)abstract
- Dogs have been essential to life in the Siberian Arctic for over 9,500 y, and this tight link between people and dogs continues in Siberian communities. Although Arctic Siberian groups such as the Nenets received limited gene flow from neighboring groups, archaeological evidence suggests that metallurgy and new subsistence strategies emerged in Northwest Siberia around 2,000 y ago. It is unclear if the Siberian Arctic dog population was as continuous as the people of the region or if instead admixture occurred, possibly in relation to the influx of material culture from other parts of Eurasia. To address this question, we sequenced and analyzed the genomes of 20 ancient and historical Siberian and Eurasian Steppe dogs. Our analyses indicate that while Siberian dogs were genetically homogenous between 9,500 to 7,000 y ago, later introduction of dogs from the Eurasian Steppe and Europe led to substantial admixture. This is clearly the case in the Iamal-Nenets region (Northwestern Siberia) where dogs from the Iron Age period (∼2,000 y ago) possess substantially less ancestry related to European and Steppe dogs than dogs from the medieval period (∼1,000 y ago). Combined with findings of nonlocal materials recovered from these archaeological sites, including glass beads and metal items, these results indicate that Northwest Siberian communities were connected to a larger trade network through which they acquired genetically distinctive dogs from other regions. These exchanges were part of a series of major societal changes, including the rise of large-scale reindeer pastoralism ∼800 y ago.
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