| 1. |
- Aaltonen, Kirsimari, et al.
(författare)
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Cyclin D1 expression is associated with poor prognostic features in estrogen receptor positive breast cancer
- 2009
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Ingår i: Breast Cancer Research and Treatment. - : Springer Science and Business Media LLC. - 1573-7217 .- 0167-6806. ; 113:1, s. 75-82
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Tidskriftsartikel (refereegranskat)abstract
- Cyclins D1 and E play an important role in breast carcinogenesis. High cyclin E expression is common in hormone receptor negative and high grade aggressive breast cancer, whereas cyclin D1 in hormone receptor positive and low grade breast cancer. Experimental data has suggested that cyclin D1 and E mediate cell proliferation by different mechanisms in estrogen receptor (ER) positive and negative breast cancer. To test this hypotheses in large breast cancer material and to clarify the histopathological correlations of cyclin E and D1, especially the association with proliferation, we analyzed cyclin E and D1 immunohistochemical expression on breast tumour microarrays consisting of 1348 invasive breast cancers. High cyclin D1 expression was associated with high grade (P < 0.0005), high cyclin A (P < 0.0005) and Ki67 (P < 0.0005) expression among ER positive but with low grade (P = 0.05) and low Ki67 (P = 0.01) expression among ER negative breast cancers. Cyclin E and D1 expression correlated positively in ER positive (P < 0.0005) but had a negative correlation in ER negative tumours (P = 0.004). Cyclin E associated with high grade among all tumours (P < 0.0005). In conclusion, the findings of this study show that cyclin D1 has separate roles, and proliferation is driven by different mechanisms in ER positive and negative breast cancers.
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| 2. |
- Aaltonen, Kristina, et al.
(författare)
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Molecular Population Genetics of the SRK and SCR Self-incompatibility Genes in the Wild Plant Species Brassica cretica (Brassicaceae).
- 2009
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Ingår i: Genetics. - : Oxford University Press (OUP). - 0016-6731 .- 1943-2631. ; 181:3, s. 985-995
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Tidskriftsartikel (refereegranskat)abstract
- Self-incompatibility (SI) in plants is a classic example of a trait evolving under strong frequency-dependent selection. As a consequence, population genetic theory predicts that the S locus, which controls SI, should maintain numerous alleles, display a high level of nucleotide diversity, and, in structured populations, show a lower level of among-population differentiation compared to neutral loci. Population-level investigations of DNA sequence variation at the S locus have recently been carried out in the genus Arabidopsis, largely confirming results from theoretical models of S-locus evolutionary dynamics, but no comparable studies have been done in wild Brassica species. In this study, we sequenced parts of the S-locus genes SRK and SCR, two tightly linked genes that are directly involved in the determination of SI specificity, in samples from four natural populations of the wild species Brassica cretica. The amount and distribution of nucleotide diversity, as well as the frequency spectrum of putative functional haplotypes, observed at the S locus in B. cretica fit very well with expectations from theoretical models, providing strong evidence for frequency-dependent selection acting on the S locus in a wild Brassica species.
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| 3. |
- Aaltonen, Kristina, et al.
(författare)
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The Evolution and Diversification of S-locus Haplotypes in the Brassicaceae Family.
- 2009
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Ingår i: Genetics. - : Oxford University Press (OUP). - 0016-6731 .- 1943-2631. ; 181:3, s. 977-984
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Tidskriftsartikel (refereegranskat)abstract
- Self-incompatibility (SI) in the Brassicaceae plant family is controlled by the SRK and SCR genes situated at the S locus. A large number of S haplotypes have been identified, mainly in cultivated species of the Brassica and Raphanus genera, but recently also in wild Arabidopsis species. Here, we used DNA sequences from the SRK and SCR genes of the wild Brassica species B. cretica, together with publicly available sequence data from other Brassicaceae species, to investigate the evolutionary relationships between S haplotypes in the Brassicaceae family. The results reveal that wild and cultivated Brassica species have similar levels of SRK diversity indicating that domestication has had but a minor effect on S-locus diversity in Brassica. Our results also show that a common set of S haplotypes were present in the ancestor of the Brassica and Arabidopsis genera, that only a small number of haplotypes survived in the Brassica lineage after its separation from Arabidopsis, and that diversification within the two Brassica dominance classes occurred after the split between the two lineages. We also find indications that recombination may have occurred between the kinase domain of SRK and the SCR gene in Brassica.
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| 4. |
- Aanæs, Henrik, et al.
(författare)
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Camera Resectioning from a Box
- 2009
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Ingår i: Lecture Notes in Computer Science. - 0302-9743 .- 1611-3349.
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Konferensbidrag (refereegranskat)abstract
- In this paper we describe how we can do camera resectioning from a box with unknown dimensions, i.e. determine the camera model, assuming that image pixels are square. This assumption is equivalent to assuming that the camera as an aspect ratio of one and zero skew, and holds for most - if not all - digital cameras. Our proposed method works by first deriving 9 linear constraints on the projective camera matrix from the box, leaving a 3 dimensional subspace in which the projective camera matrix can lye. A single solution in this 3D subspace is then found via a method by Triggs in 1999, which uses the squared pixel assumption to set up a 4th degree polynomial to which the solution is the desired model. This approach is, however, numerically challenging, and we use several means to combat this issue. Lastly the solution is refined in an iterative manner, i.e. using bundle adjustment.
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| 5. |
- Aaron, F. D., et al.
(författare)
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A general search for new phenomena at HERA
- 2009
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Ingår i: Physics Letters. Section B: Nuclear, Elementary Particle and High-Energy Physics. - : Elsevier BV. - 0370-2693. ; 674:4-5, s. 257-268
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Tidskriftsartikel (refereegranskat)abstract
- A model-independent search for deviations from the Standard Model prediction is performed using the full e(+/-) p data sample collected by the H1 experiment at HERA. All event topologies involving isolated electrons, photons, muons, neutrinos and jets with transverse momenta above 20 GeV are investigated in a single analysis. Events are assigned to exclusive classes according to their final state. A dedicated algorithm is used to search for deviations from the Standard Model in the distributions of the scalar sum of transverse momenta or the invariant mass of final state particles and to quantify their significance. Variables related to angular distributions and energy sharing between final state particles are also introduced to study the final state topologies. No significant deviation from the Standard Model expectation is observed in the phase space covered by this analysis. (C) 2009 Elsevier B.V. All rights reserved.
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| 6. |
- Aaron, F. D., et al.
(författare)
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A precision measurement of the inclusive ep scattering cross section at HERA
- 2009
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 64:4, s. 561-587
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Tidskriftsartikel (refereegranskat)abstract
- A measurement of the inclusive deep inelastic neutral current e(+) p scattering cross section is reported in the region of four-momentum transfer squared, 12GeV(2) <= Q(2) <= 150 GeV2, and Bjorken x, 2 x 10(-4) <= x <= 0.1. The results are based on data collected by the H1 Collaboration at the ep collider HERA at positron and proton beam energies of E-e = 27.6 GeV and E-p = 920 GeV, respectively. The data are combined with previously published data, taken at E-p = 820 GeV. The accuracy of the combined measurement is typically in the range of 1.3-2%. A QCD analysis at next-to-leading order is performed to determine the parton distributions in the proton based on H1 data.
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| 7. |
- Aaron, F. D., et al.
(författare)
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Deeply virtual Compton scattering and its beam charge asymmetry in e(+/-)p collisions at HERA
- 2009
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Ingår i: Physics Letters. Section B: Nuclear, Elementary Particle and High-Energy Physics. - : Elsevier BV. - 0370-2693. ; 681:5, s. 391-399
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Tidskriftsartikel (refereegranskat)abstract
- A measurement of elastic deeply virtual Compton scattering gamma*p --> gamma p using e(+) p and e(-) p collision data recorded with the HI detector at HERA is presented. The analysed data sample corresponds to an integrated luminosity of 306 pb(-1), almost equally shared between both beam charges. The cross section is measured as a function of the virtuality Q(2) of the exchanged photon and the centre-of-mass energy W of the gamma*p system in the kinematic domain 6.5 < Q(2) < 80 GeV2, 30 < W < 140 GeV and |t| < 1 GeV2, where t denotes the squared momentum transfer at the proton vertex. The cross section is determined differentially in t for different Q(2) and W values and exponential t-slope parameters are derived. Using e(+) p and e(-) p data samples, a beam charge asymmetry is extracted for the first time in the low Biorken x kinematic domain. The observed asymmetry is attributed to the interference between Bethe-Heitler and deeply virtual Compton scattering processes. Experimental results are discussed in the context of two different models, one based on generalised parton distributions and one based on the dipole approach. (C) 2009 Elsevier B.V. All rights reserved.
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| 8. |
- Aaron, F. D., et al.
(författare)
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Events with isolated leptons and missing transverse momentum and measurement of W production at HERA
- 2009
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 64:2, s. 251-271
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Tidskriftsartikel (refereegranskat)abstract
- Events with high energy isolated electrons, muons or tau leptons and missing transverse momentum are studied using the full e(+/-)p data sample collected by the H1 experiment at HERA, corresponding to an integrated luminosity of 474 pb(-1). Within the Standard Model, events with isolated leptons and missing transverse momentum mainly originate from the production of single W bosons. The total single W boson production cross section is measured as 1.14 +/- 0.25 (stat.) +/- 0.14 (sys.) pb, in agreement with the Standard Model expectation. The data are also used to establish limits on the WW gamma gauge couplings and for a measurement of the W boson polarisation.
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| 9. |
- Aaron, F. D., et al.
(författare)
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Inclusive photoproduction of rho(0), K*(0) and phi mesons at HERA H1 Collaboration
- 2009
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Ingår i: Physics Letters. Section B: Nuclear, Elementary Particle and High-Energy Physics. - : Elsevier BV. - 0370-2693. ; 673:2, s. 119-126
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Tidskriftsartikel (refereegranskat)abstract
- Inclusive non-diffractive photoproduction of rho(770)(0), K*(892)(0) and phi(1020) mesons is investigated with the H1 detector in ep collisions at HERA. The corresponding average gamma p centre-of-mass energy is 210 GeV. The mesons are measured in the transverse momentum range 0.5 < p(T) < 7 GeV and the rapidity range vertical bar y(lab)vertical bar < 1. Differential cross sections are presented as a function of transverse momentum and rapidity, and are compared to the predictions of hadroproduction models. (C) 2009 Elsevier B.V. All rights reserved.
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| 10. |
- Aaron, F. D., et al.
(författare)
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Measurement of diffractive scattering of photons with large momentum transfer at HERA
- 2009
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Ingår i: Physics Letters. Section B: Nuclear, Elementary Particle and High-Energy Physics. - : Elsevier BV. - 0370-2693. ; 672:3, s. 219-226
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Tidskriftsartikel (refereegranskat)abstract
- The first measurement of diffractive scattering of quasi-real photons with large momentum transfer gamma p -> gamma Y, where Y is the proton dissociative system, is made using the H1 detector at HERA. The measurement is performed for initial photon virtualities Q(2) < 0.01 GeV2. Single differential cross sections are Measured as a function of W, the incident photon-proton centre of mass energy, and t, the square of the four-momentum transferred at the proton vertex, in the range 175 < W < 247 GeV and 4 < |t| < 36 GeV2. The W dependence is well described by a model based on perturbative QCD using a leading logarithmic approximation of the BFKL evolution. The measured |t| dependence is harder than that predicted by the model and those observed in exclusive vector meson production. (C) 2009 Published by Elsevier B.V.
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