| 1. |
- Church, Deanna M, et al.
(författare)
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Lineage-specific biology revealed by a finished genome assembly of the mouse
- 2009
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Ingår i: PLoS biology. - : Public Library of Science (PLoS). - 1544-9173 .- 1545-7885. ; 7:5, s. e1000112-
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Tidskriftsartikel (refereegranskat)abstract
- The mouse (Mus musculus) is the premier animal model for understanding human disease and development. Here we show that a comprehensive understanding of mouse biology is only possible with the availability of a finished, high-quality genome assembly. The finished clone-based assembly of the mouse strain C57BL/6J reported here has over 175,000 fewer gaps and over 139 Mb more of novel sequence, compared with the earlier MGSCv3 draft genome assembly. In a comprehensive analysis of this revised genome sequence, we are now able to define 20,210 protein-coding genes, over a thousand more than predicted in the human genome (19,042 genes). In addition, we identified 439 long, non-protein-coding RNAs with evidence for transcribed orthologs in human. We analyzed the complex and repetitive landscape of 267 Mb of sequence that was missing or misassembled in the previously published assembly, and we provide insights into the reasons for its resistance to sequencing and assembly by whole-genome shotgun approaches. Duplicated regions within newly assembled sequence tend to be of more recent ancestry than duplicates in the published draft, correcting our initial understanding of recent evolution on the mouse lineage. These duplicates appear to be largely composed of sequence regions containing transposable elements and duplicated protein-coding genes; of these, some may be fixed in the mouse population, but at least 40% of segmentally duplicated sequences are copy number variable even among laboratory mouse strains. Mouse lineage-specific regions contain 3,767 genes drawn mainly from rapidly-changing gene families associated with reproductive functions. The finished mouse genome assembly, therefore, greatly improves our understanding of rodent-specific biology and allows the delineation of ancestral biological functions that are shared with human from derived functions that are not.
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| 2. |
- Öhrn, Angelica, et al.
(författare)
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Elastic scattering of 96 MeV neutrons from iron, yttrium, and lead
- 2008
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Ingår i: Physical Review C. Nuclear Physics. - 0556-2813 .- 1089-490X. ; 77:2, s. 024605-
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Tidskriftsartikel (refereegranskat)abstract
- Data on elastic scattering of 96 MeV neutrons from Fe-56, Y-89, and Pb-208 in the angular interval 10-70 degrees are reported. The previously published data on Pb-208 have been extended, as a new method has been developed to obtain more information from data, namely to increase the number of angular bins at the most forward angles. A study of the deviation of the zero-degree cross section from Wick's limit has been performed. It was shown that the data on Pb-208 are in agreement with Wick's limit while those on the lighter nuclei overshoot the limit significantly. The results are compared with modern optical model predictions, based on phenomenology and microscopic nuclear theory. The data on Fe-56, Y-89, and Pb-208 are in general in good agreement with the model predictions.
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| 3. |
- De Vin, Leo, et al.
(författare)
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Information fusion for decision support in manufacturing : studies from the defense sector
- 2008
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Ingår i: The International Journal of Advanced Manufacturing Technology. - : Springer. - 0268-3768 .- 1433-3015. ; 35:9-10, s. 908-915
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Information fusion, the synergistic combination of information from multiple sources, is an established research area within the defense sector. In manufacturing however, it is less well-established, with the exception of sensor/data fusion for automatic decision making. The paper briefly discusses some military specific models and methods for information fusion; analogies with manufacturing as well as a more generalized terminology are presented. “Manufacturing” is an application scenario within a Swedish information fusion research program that studies information fusion from databases, sensors and simulations with (currently) a focus on support for human decision making. An area of particular interest is that of advanced applications of virtual manufacturing such as synthetic environments, a form of hardware in the loop simulation that can deliver services such as service and maintenance at remote locations. In this area, the manufacturing industry can benefit from ongoing work in the defense sector related to verification, validation and accreditation of simulation models.
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| 7. |
- Aguda, Adeleke Halilu, et al.
(författare)
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Expression, crystallization and preliminary crystallographic data analysis of filamin A repeats 14-16
- 2007
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Ingår i: Acta Crystallographica. Section F. - 1744-3091 .- 1744-3091. ; 63:4, s. 291-293
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Tidskriftsartikel (refereegranskat)abstract
- Human filamin A is a 280 kDa protein involved in actin-filament cross-linking. It is structurally divided into an actin-binding headpiece (ABD) and a rod domain containing 24 immunoglobulin-like (Ig) repeats. A fragment of human filamin A (Ig repeats 14-16) was cloned and expressed in Escherichia coli and the purified protein was crystallized in 1.6 M ammonium sulfate, 2% PEG 1000 and 100 mM HEPES pH 7.5. The crystals diffracted to 1.95 A and belong to space group P2(1)2(1)2(1), with unit-cell parameters a = 50.63, b = 52.10, c = 98.46 A, alpha = beta = gamma = 90 degrees.
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| 8. |
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| 9. |
- De Vin, Leo, et al.
(författare)
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Information Fusion : What can the manufacturing sector learn from the defence industry?
- 2005
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Ingår i: IMC 22: Challenges Facing Manufacturing. - Dublin : Institute of Technology, Tallaght. - 9780955121807 ; , s. 363-371
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Konferensbidrag (refereegranskat)abstract
- This paper discusses information fusion including its nature as well as some models for information fusion. Research on information fusion is dominated by defence applications and therefore, most models to a certain extent are defence specific; it is explained how these can be made more generic by adapting them. It is explained how the manufacturing sector can benefit from information fusion research; some analogies between issues in manufacturing and issues in military applications are given. A specific area in which the manufacturing sector can benefit from research on information fusion is the area of virtual manufacturing. Many issues related to decision support through modelling, simulation and synthetic environments are identical for manufacturing and defence applications. A particular area of interest for the future will be verification, validation and accreditation of modelling and simulation components for synthetic environments with various involved parties.
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