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- Seveso, Andrea, 1992, et al.
(författare)
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Polysaccharide utilization loci from Bacteroidota encode CE15 enzymes with possible roles in cleaving pectin-lignin bonds
- 2024
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Ingår i: Applied and Environmental Microbiology. - 1098-5336 .- 0099-2240. ; 90:1
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Tidskriftsartikel (refereegranskat)abstract
- Lignocellulose is a renewable but complex material exhibiting high recalcitrance to enzymatic hydrolysis, which is attributed, in part, to the presence of covalent linkages between lignin and polysaccharides in the plant cell wall. Glucuronoyl esterases from carbohydrate esterase family 15 (CE15) have been proposed as an aid in reducing this recalcitrance by cleaving ester bonds found between lignin and glucuronoxylan. In the Bacteroidota phylum, some species organize genes related to carbohydrate metabolism in polysaccharide utilization loci (PULs) which encode all necessary proteins to bind, deconstruct, and respond to a target glycan. Bioinformatic analyses identified CE15 members in some PULs that appear to not target the expected glucuronoxylan. Here, five CE15 members from such PULs were investigated with the aim of gaining insights on their biological roles. The selected targets were characterized using glucuronoyl esterase model substrates and with a new synthetic molecule mimicking a putative ester linkage between pectin and lignin. The CE15 enzyme from Phocaeicola vulgatus was structurally determined by X-ray crystallography both with and without carbohydrate ligands with galacturonate binding in a distinct conformation than that of glucuronate. We further explored whether these CE15 enzymes could act akin to pectin methylesterases on pectin-rich biomass but did not find evidence to support the proposed activity. Based on the evidence gathered, the CE15 enzymes in the PULs expected to degrade pectin could be involved in cleavage of uronic acid esters in rhamnogalacturonans.IMPORTANCEThe plant cell wall is a highly complex matrix, and while most of its polymers interact non-covalently, there are also covalent bonds between lignin and carbohydrates. Bonds between xylan and lignin are known, such as the glucuronoyl ester bonds that are cleavable by CE15 enzymes. Our work here indicates that enzymes from CE15 may also have other activities, as we have discovered enzymes in PULs proposed to target other polysaccharides, including pectin. Our study represents the first investigation of such enzymes. Our first hypothesis that the enzymes would act as pectin methylesterases was shown to be false, and we instead propose that they may cleave other esters on complex pectins such as rhamnogalacturonan II. The work presents both the characterization of five novel enzymes and can also provide indirect information about the components of the cell wall itself, which is a highly challenging material to chemically analyze in fine detail. The plant cell wall is a highly complex matrix, and while most of its polymers interact non-covalently, there are also covalent bonds between lignin and carbohydrates. Bonds between xylan and lignin are known, such as the glucuronoyl ester bonds that are cleavable by CE15 enzymes. Our work here indicates that enzymes from CE15 may also have other activities, as we have discovered enzymes in PULs proposed to target other polysaccharides, including pectin. Our study represents the first investigation of such enzymes. Our first hypothesis that the enzymes would act as pectin methylesterases was shown to be false, and we instead propose that they may cleave other esters on complex pectins such as rhamnogalacturonan II. The work presents both the characterization of five novel enzymes and can also provide indirect information about the components of the cell wall itself, which is a highly challenging material to chemically analyze in fine detail.
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| 4. |
- Webster, J. M., et al.
(författare)
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Magnetospheric Multiscale Dayside Reconnection Electron Diffusion Region Events
- 2018
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Ingår i: Journal of Geophysical Research - Space Physics. - : AMER GEOPHYSICAL UNION. - 2169-9380 .- 2169-9402. ; 123:6, s. 4858-4878
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Tidskriftsartikel (refereegranskat)abstract
- We use high-resolution data from dayside passes of the Magnetospheric Multiscale (MMS) mission to create for the first time a comprehensive listing of encounters with the electron diffusion region (EDR), as evidenced by electron agyrotropy, ion jet reversals, and j.E' > 0. We present an overview of these 32 EDR or near-EDR events, which demonstrate a wide variety of observed plasma behavior inside and surrounding the reconnection site. We analyze in detail three of the 21 new EDR encounters, which occurred within a 1-min-long interval on 23 November 2016. The three events, which resulted from a relatively low and oscillating magnetopause velocity, exhibited large electric fields (up to similar to 100 mV/m), crescent-shaped electron velocity phase space densities, large currents (>= 2 mu A/m(2)), and Ohmic heating of the plasma (similar to 10 nW/m(3)). We include an Ohm's law analysis, in which we show that the divergence of the electron pressure term usually dominates the nonideal terms and is much more turbulent on the magnetosphere versus the magnetosheath side of the EDR.
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| 6. |
- De Dios, Anjeline, et al.
(författare)
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Thinking decolonially towards music’s institution: : A post-conference reflection
- 2023
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Ingår i: Seismograf. - 2245-4705.
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- How do we talk about musical colonisation? How do we talk about this work of talking about it; that is, interrogating what we mean by colonisation and its counter-logic of decolonisation or decoloniality? What can and must we talk about in this particular moment – when talk of decolonisation is at an all-time high, yet without clear consensus and much misuse of the concept? These questions, and the insights that emerged from them, animated the two-day conference Music’s institution and the (de)colonial, and are reflected and summed up in this article. The article ends with a list for "research strategies and practices for music's institution and the (de)colonial: a conference glossary". The list is a first attempt to be explicit about how we deal with the many challenges we face within this field.
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| 9. |
- Antochi, Vasile C., 1992-, et al.
(författare)
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Design and performance of the field cage for the XENONnT experiment
- 2024
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Ingår i: European Physical Journal C. - 1434-6044 .- 1434-6052. ; 84:2
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Tidskriftsartikel (refereegranskat)abstract
- The precision in reconstructing events detected in a dual-phase time projection chamber depends on an homogeneous and well understood electric field within the liquid target. In the XENONnT TPC the field homogeneity is achieved through a double-array field cage, consisting of two nested arrays of field shaping rings connected by an easily accessible resistor chain. Rather than being connected to the gate electrode, the topmost field shaping ring is independently biased, adding a degree of freedom to tune the electric field during operation. Two-dimensional finite element simulations were used to optimize the field cage, as well as its operation. Simulation results were compared to 83mKr calibration data. This comparison indicates an accumulation of charge on the panels of the TPC which is constant over time, as no evolution of the reconstructed position distribution of events is observed. The simulated electric field was then used to correct the charge signal for the field dependence of the charge yield. This correction resolves the inconsistent measurement of the drift electron lifetime when using different calibrations sources and different field cage tuning voltages.
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| 10. |
- Donahue, Manus J, et al.
(författare)
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Consensus statement on current and emerging methods for the diagnosis and evaluation of cerebrovascular disease
- 2018
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Ingår i: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. - 1559-7016. ; 38:9, s. 1391-1417
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Forskningsöversikt (refereegranskat)abstract
- Cerebrovascular disease (CVD) remains a leading cause of death and the leading cause of adult disability in most developed countries. This work summarizes state-of-the-art, and possible future, diagnostic and evaluation approaches in multiple stages of CVD, including (i) visualization of sub-clinical disease processes, (ii) acute stroke theranostics, and (iii) characterization of post-stroke recovery mechanisms. Underlying pathophysiology as it relates to large vessel steno-occlusive disease and the impact of this macrovascular disease on tissue-level viability, hemodynamics (cerebral blood flow, cerebral blood volume, and mean transit time), and metabolism (cerebral metabolic rate of oxygen consumption and pH) are also discussed in the context of emerging neuroimaging protocols with sensitivity to these factors. The overall purpose is to highlight advancements in stroke care and diagnostics and to provide a general overview of emerging research topics that have potential for reducing morbidity in multiple areas of CVD.
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