| 1. |
- Ethier, J-F., et al.
(author)
-
Clinical Data Integration Model : Core Interoperability Ontology for Research Using Primary Care Data
- 2015
-
In: Methods of Information in Medicine. - 0026-1270 .- 2511-705X. ; 54:1, s. 16-23
-
Journal article (peer-reviewed)abstract
- Introduction: This article is part of the Focus Theme of Methods of Information in Medicine on "Managing Interoperability and Complexity in Health Systems". Background: Primary care data is the single richest source of routine health care data. However its use, both in research and clinical work, often requires data from multiple clinical sites, clinical trials databases and registries. Data integration and interoperability are therefore of utmost importance. Objectives: TRANSFoRm's general approach relies on a unified interoperability frame-work, described in a previous paper. We developed a core ontology for an interoperability framework based on data mediation. This article presents how such an ontology, the Clinical Data Integration Model (CDIM), can be designed to support, in conjunction with appropriate terminologies, biomedical data federation within TRANSFoRm, an EU FP7 project that aims to develop the digital infrastructure for a learning healthcare system in European Primary Care. Methods: TRANSFoRm utilizes a unified structural /terminological interoperability framework, based on the local-as-view mediation paradigm. Such an approach mandates the global information model to describe the domain of interest independently of the data sources to be explored. Following a requirement analysis process, no ontology focusing on primary care research was identified and, thus we designed a realist ontology based on Basic Formal Ontology to support our framework in collaboration with various terminologies used in primary care. Results: The resulting ontology has 549 classes and 82 object properties and is used to support data integration for TRANSFoRm's use cases. Concepts identified by researchers were successfully expressed in queries using CDIM and pertinent terminologies. As an example, we illustrate how, in TRANSFoRm, the Query Formulation Workbench can capture eligibility criteria in a computable representation, which is based on CDIM. Conclusion: A unified mediation approach to semantic interoperability provides a flexible and extensible framework for all types of interaction between health record systems and research systems. CDIM, as core ontology of such an approach, enables simplicity and consistency of design across the heterogeneous software landscape and can support the specific needs of EHR-driven phenotyping research using primary care data.
|
|
| 2. |
|
|
| 3. |
- Luque, Francisco J., et al.
(author)
-
Enantiosensitive Bonding of Chiral Molecules on a Magnetic Substrate Investigated by Means of Electron Spectroscopies
- 2018
-
In: CHIMIA. - : Swiss Chemical Society. - 0009-4293 .- 2673-2424. ; 72:6, s. 418-423
-
Journal article (peer-reviewed)abstract
- The adsorption of purely organic chiral molecules on ferromagnetic Co thin films is studied under ultra high vacuum conditions by means of synchrotron radiation-based electron spectroscopies, namely X-ray absorption and ultraviolet photoemission. X-ray absorption reveals that enantiomers with opposite handedness (R,R) - and (S,S)- of two different molecules adsorb with different strength on the Co surfaces and their valence band photoemission spectra also display distinctive features. In view of the recent reports describing the chiral-induced spin selectivity (CISS) effect these results lead us to consider the possibility that some enantiosensitivity may appear when bonding chiral molecules to a substrate with an initial asymmetry in the population of the different spin orientations.
|
|
| 4. |
- Delaney, BC, et al.
(author)
-
Translational Medicine and Patient Safety in Europe: TRANSFoRm--Architecture for the Learning Health System in Europe
- 2015
-
In: BioMed research international. - : Hindawi Limited. - 2314-6141 .- 2314-6133. ; 2015, s. 961526-
-
Journal article (peer-reviewed)abstract
- The Learning Health System (LHS) describes linking routine healthcare systems directly with both research translation and knowledge translation as an extension of the evidence-based medicine paradigm, taking advantage of the ubiquitous use of electronic health record (EHR) systems. TRANSFoRm is an EU FP7 project that seeks to develop an infrastructure for the LHS in European primary care.Methods. The project is based on three clinical use cases, a genotype-phenotype study in diabetes, a randomised controlled trial with gastroesophageal reflux disease, and a diagnostic decision support system for chest pain, abdominal pain, and shortness of breath.Results. Four models were developed (clinical research, clinical data, provenance, and diagnosis) that form the basis of the projects approach to interoperability. These models are maintained as ontologies with binding of terms to define precise data elements. CDISC ODM and SDM standards are extended using an archetype approach to enable a two-level model of individual data elements, representing both research content and clinical content. Separate configurations of the TRANSFoRm tools serve each use case.Conclusions.The project has been successful in using ontologies and archetypes to develop a highly flexible solution to the problem of heterogeneity of data sources presented by the LHS.
|
|
| 5. |
- Ivanov, Sergey A., et al.
(author)
-
Structural and magnetic properties of nickel antimony ferrospinels
- 2015
-
In: Materials Chemistry and Physics. - : Elsevier BV. - 0254-0584 .- 1879-3312. ; 158, s. 127-137
-
Journal article (peer-reviewed)abstract
- Spinel-type compounds of Fe-Ni-Sb-O system were synthesized as polycrystalline powders. The crystal and magnetic properties were investigated using X-ray and neutron powder diffraction, Mossbauer and X-ray absorption spectroscopy and magnetization measurements. The samples crystallize in the cubic system, space group Fd - 3 m. The distribution of cations between octahedral and tetrahedral sites was refined from the diffraction data sets using constraints imposed by the magnetic, Mossbauer and EDS results and the ionic radii. The cation distribution and the temperature dependence of the lattice parameter (a) and the oxygen positional parameter (u) were obtained. A chemical formula close to Fe0.8Ni1.8Sb0.4O4 was determined, with Sb5+ cations occupying octahedral sites, and Fe3+ and Ni2+ occupying both tetrahedral and octahedral sites. Fe3+ mainly (85/15 ratio) occupy tetrahedral sites, and conversely Ni2+ mainly reside on octahedral ones. The magnetic unit cell is the same as the crystallographic one, having identical symmetry relations. The results indicate that the compounds have a collinear ferrimagnetic structure with antiferromagnetic coupling between the tetrahedral (A) and octahedral (B) sites. Uniquely, the temperature dependence of the net magnetization of this rare earth free ferrimagnet exhibits a compensation point.
|
|
| 6. |
- Kowalik, I. A., et al.
(author)
-
Soft x-ray absorption spectroscopy on Co doped ZnO : structural distortions and electronic structure
- 2016
-
In: 16th International Conference On X-Ray Absorption Fine Structure (XAFS16). - : IOP Publishing.
-
Conference paper (peer-reviewed)abstract
- We present soft x-ray absorption spectra from a series of Co doped ZnO films. We discuss systematic variations of the Co L-edge white line intensity and multiplet features for this series of samples. We document sizeable differences in the electronic state of the Co ionic cores, as well as in the local environment of the host lattice atoms, characterised by means of x-ray absorption spectra at the O K-edge and Zn L-edges. Model calculations allow to correlate the observed effects to small structural distortions of the ZnO lattice.
|
|
