| 1. |
- Bengtsson, Therese, et al.
(författare)
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Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach
- 2014
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Ingår i: BMC Genomics. - : Springer Science and Business Media LLC. - 1471-2164. ; 15
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Tidskriftsartikel (refereegranskat)abstract
- Background: Induced resistance (IR) can be part of a sustainable plant protection strategy against important plant diseases. beta-aminobutyric acid (BABA) can induce resistance in a wide range of plants against several types of pathogens, including potato infected with Phytophthora infestans. However, the molecular mechanisms behind this are unclear and seem to be dependent on the system studied. To elucidate the defence responses activated by BABA in potato, a genome-wide transcript microarray analysis in combination with label-free quantitative proteomics analysis of the apoplast secretome were performed two days after treatment of the leaf canopy with BABA at two concentrations, 1 and 10 mM. Results: Over 5000 transcripts were differentially expressed and over 90 secretome proteins changed in abundance indicating a massive activation of defence mechanisms with 10 mM BABA, the concentration effective against late blight disease. To aid analysis, we present a more comprehensive functional annotation of the microarray probes and gene models by retrieving information from orthologous gene families across 26 sequenced plant genomes. The new annotation provided GO terms to 8616 previously un-annotated probes. Conclusions: BABA at 10 mM affected several processes related to plant hormones and amino acid metabolism. A major accumulation of PR proteins was also evident, and in the mevalonate pathway, genes involved in sterol biosynthesis were down-regulated, whereas several enzymes involved in the sesquiterpene phytoalexin biosynthesis were up-regulated. Interestingly, abscisic acid (ABA) responsive genes were not as clearly regulated by BABA in potato as previously reported in Arabidopsis. Together these findings provide candidates and markers for improved resistance in potato, one of the most important crops in the world.
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| 2. |
- Bladh, Henrik, et al.
(författare)
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Influence of Soot Particle Aggregation on Time-Resolved Laser-Induced Incandescence Signals
- 2011
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Ingår i: Applied Physics B. - : Springer Science and Business Media LLC. - 0946-2171 .- 1432-0649. ; 104:2, s. 331-341
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Tidskriftsartikel (refereegranskat)abstract
- Laser-induced incandescence (LII) is a versatile technique for quantitative soot measurements in flames and exhausts. When used for particle sizing, the time-resolved signals are analysed as these will show a decay rate dependent on the soot particle size. Such an analysis has traditionally been based on the assumption of isolated primary particles. However, soot particles in flames and exhausts are usually aggregated, which implies loss of surface area, less heat conduction and hence errors in estimated particle sizes. In this work we present an experimental investigation aiming to quantify this effect. A soot generator, based on a propane diffusion flame, was used to produce a stable soot stream and the soot was characterised by transmission electron microscopy (TEM), a scanning mobility particle sizer (SMPS) and an aerosol particle mass analyzer coupled in series after a differential mobility analyzer (DMA-APM). Despite nearly identical primary particle size distributions for three selected operating conditions, LII measurements resulted in signal decays with significant differences in decay rate. However, the three cases were found to have quite different levels of aggregation as shown both in TEM images and mobility size distributions, and the results agree qualitatively with the expected effect of diminished heat conduction from aggregated particles resulting in longer LII signal decays. In an attempt to explain the differences quantitatively, the LII signal dependence on aggregation was modelled using a heat and mass transfer model for LII given the primary particle and aggregate size distribution data as input. Quantitative agreement was not reached and reasons for this discrepancy are discussed.
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| 3. |
- Bladh, Henrik, et al.
(författare)
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Optical soot characterization using two-color laser-induced incandescence (2C-LII) in the soot growth region of a premixed flat flame
- 2011
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Ingår i: Proceedings of the Combustion Institute. - : Elsevier BV. - 1540-7489. ; 33, s. 641-648
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Tidskriftsartikel (refereegranskat)abstract
- The soot growth region of a premixed one-dimensional ethylene/air flame has been investigated using two-color laser-induced incandescence (2C-LII) with focus on optical soot properties. From the 2C-LII technique, primary soot particle sizes were deduced together with the temperature from pyrometry of the laser-heated particles, while the gas temperatures were obtained from pure rotational CARS nitrogen thermometry. Soot particle sizes were also measured from thermophoretically sampled soot particles analyzed by transmission electron microscopy (TEM), and the results showed growing isolated primary soot particles up to a height of 10 mm, after which strong soot aggregation occurred and the increase in soot primary particle size ceased. The measured data was used in the evaluation of the soot absorption function, E(m), and a strong increase by a factor of two was observed from the lowest heights to the highest for assumed constant values of soot density and specific heat at all heights. By comparing the 2C-LII particle sizes with the sizes obtained from TEM, differences were observed. Part of the explanation is that the 2C-LII evaluation did not take aggregation into account, but it is additionally speculated that the thermal accommodation coefficient decreases with height above burner. These results are interesting in view of morphological and composition changes of the soot during the growth process and have implications for the use of 2C-LII as a soot diagnostic technique. (C) 2010 The Combustion Institute. Published by Elsevier Inc. All rights reserved.
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| 4. |
- Chorell, Erik, et al.
(författare)
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Design and Synthesis of Fluorescent Pilicides and Curlicides : Bioactive Tools to Study Bacterial Virulence Mechanisms
- 2012
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Ingår i: Chemistry - A European Journal. - Berlin : Wiley-VCH Verlagsgesellschaft. - 0947-6539 .- 1521-3765. ; 18:15, s. 4522-4532
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Tidskriftsartikel (refereegranskat)abstract
- Pilicides and curlicides are compounds that block the formation of the virulence factors pili and curli, respectively. To facilitate studies of the interaction between these compounds and the pili and curli assembly systems, fluorescent pilicides and curlicides have been synthesized. This was achieved by using a strategy based on structure-activity knowledge, in which key pilicide and curlicide substituents on the ring-fused dihydrothiazolo 2-pyridone central fragment were replaced by fluorophores. Several of the resulting fluorescent compounds had improved activities as measured in pili- and curli-dependent biofilm assays. We created fluorescent pilicides and curlicides by introducing coumarin and 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) fluorophores at two positions on the peptidomimetic pilicide and curlicide central fragment. Fluorescence images of the uropathogenic Escherichia coli (UPEC) strain UTI89 grown in the presence of these compounds shows that the compounds are strongly associated with the bacteria with a heterogeneous distribution.
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| 5. |
- Jansson, Sven-Arne, et al.
(författare)
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Health-related quality of life, assessed with a disease-specific questionnaire, in Swedish adults suffering from well-diagnosed food allergy to staple foods
- 2013
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Ingår i: Clinical and Translational Allergy. - : Wiley. - 2045-7022. ; 3:21
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundOur aim was to investigate the factors that affect health related quality of life (HRQL) in adult Swedish food allergic patients objectively diagnosed with allergy to at least one of the staple foods cow’s milk, hen’s egg or wheat. The number of foods involved, the type and severity of symptoms, as well as concomitant allergic disorders were assessed.MethodsThe disease-specific food allergy quality of life questionnaire (FAQLQ-AF), developed within EuroPrevall, was utilized. The questionnaire had four domains: Allergen Avoidance and Dietary Restrictions (AADR), Emotional Impact (EI), Risk of Accidental Exposure (RAE) and Food Allergy related Health (FAH). Comparisons were made with the outcome of the generic questionnaire EuroQol Health Questionnaire, 5 Dimensions (EQ-5D). The patients were recruited at an outpatient allergy clinic, based on a convincing history of food allergy supplemented by analysis of specific IgE to the foods in question. Seventy-nine patients participated (28 males, 51 females, mean-age 41 years).ResultsThe domain with the most negative impact on HRQL was AADR, assessing the patients’ experience of dietary restrictions. The domain with the least negative impact on HRQL was FAH, relating to health concerns due to the food allergy. One third of the patients had four concomitant allergic disorders, which had a negative impact on HRQL. Furthermore, asthma in combination with food allergy had a strong impact. Anaphylaxis, and particularly prescription of an epinephrine auto-injector, was associated with low HRQL. These effects were not seen using EQ-5D. Analyses of the symptoms revealed that oral allergy syndrome and cardiovascular symptoms had the greatest impact on HRQL. In contrast, no significant effect on HRQL was seen by the number of food allergies.ConclusionsThe FAQLQ-AF is a valid instrument, and more accurate among patients with allergy to staple foods in comparison to the commonly used generic EQ-5D. It adds important information on HRQL in food allergic adults. We found that the restrictions imposed on the patients due to the diet had the largest negative impact on HRQL. Both severity of the food allergy and the presence of concomitant allergic disorders had a profound impact on HRQL.
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| 6. |
- Johansson, Nils, et al.
(författare)
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Möjlighet till utrymning vid brand
- 2012
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Ingår i: Brandskyddshandboken - En handbok för projektering av brandskydd i byggnader. - 1402-3504. ; , s. 75-116
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Bokkapitel (refereegranskat)
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| 7. |
- Johnsson, Jonathan, et al.
(författare)
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Influence of soot aggregate structure on particle sizing using laser-induced incandescence: importance of bridging between primary particles
- 2013
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Ingår i: Applied Physics B. - : Springer Science and Business Media LLC. - 0946-2171 .- 1432-0649. ; 112:3, s. 321-332
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Tidskriftsartikel (refereegranskat)abstract
- Soot aggregates formed in combustion processes are often described as clusters of carbonaceous particles in random fractal structures. For theoretical studies of the physical properties of such aggregates, they have often been modelled as spherical primary particles in point contact. However, transmission electron microscopy (TEM) images show that the primary particles are more connected than in a single point; there is a certain amount of bridging between the primary particles. Particle sizing using the diagnostic technique laser-induced incandescence (LII) is crucially dependent on the heat conduction rate from the aggregate to the ambient gas, which depends on the amount of bridging. In this work, aggregates with bridging are modelled using overlapping spheres, and it is shown how such aggregates can be built to fulfil specific fractal parameters. Aggregates with and without bridging are constructed numerically, and it is investigated how the bridging influences the heat conduction rate in the free-molecular regime. The calculated heat conduction rates are then used in an LII model to show how LII particle sizing is influenced by different amounts of bridging. For realistic amounts of bridging (), the primary particle diameters were overestimated by up to 9 % if bridging was not taken into account.
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| 8. |
- Oliveira, M. H. de Andrade, et al.
(författare)
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Soot, PAH and OH measurements in vaporized liquid fuel flames
- 2013
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Ingår i: Fuel. - : Elsevier BV. - 1873-7153 .- 0016-2361. ; 112, s. 145-152
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Tidskriftsartikel (refereegranskat)abstract
- Qualitative measurements of both OH and polycyclic aromatic hydrocarbons (PAH) as well as quantitative data of soot volume fraction f(v) have been obtained in vaporized liquid fuels, with the main goal of providing experimental data for combustion models and numerical mechanism validation. Measurements were carried out in a laminar coflow burner which was designed, built and integrated with an evaporation system, enabling the combustion of vaporized liquid fuels at pressures of up to 3.0 MPa to be studied. The fuels n-heptane and n-decane, referred to in the literature as being important surrogate fuels, were selected for measurements at atmospheric pressure that were carried out in the experimental setup described, making use of a combination of the Laser Induced Fluorescence (LIF) and Laser Induced Incandescence (LII) techniques. Partially premixed flames of n-heptane and n-decane showed similar combustion characteristics in the range of 1.9 < phi < 3.7. For both of the fuels the threshold for soot formation was found to be at about phi similar to 3.3. Comparison of the LIF and LII measurements for the n-heptane flames within the range of 3.7 <= phi <= 8.5 indicated the maximum PAH LIF signal to be a good predictor of f(vmax) obtained from LII. Excitation at 266 nm using delayed detection was found to result in the signals obtained showing a close linear correlation with the soot volume fraction obtained from LII when prompt detection at 1064 nm excitation was used. Neither the effects of any additional photo-chemical processes making use of high laser power at 266 nm nor the effects of particle size on the delayed gate times appeared to be of any significance for the flame conditions studied here. (C) 2013 Elsevier Ltd. All rights reserved.
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| 9. |
- Olofsson, Nils-Erik, et al.
(författare)
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Are Sooting Premixed Porous-Plug Burner Flames One-Dimensional? A Laser-Based Experimental Investigation
- 2013
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Ingår i: Combustion Science and Technology. - : Informa UK Limited. - 1563-521X .- 0010-2202. ; 185:2, s. 293-309
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Tidskriftsartikel (refereegranskat)abstract
- The one-dimensional character of sooting premixed porous-plug (McKenna) burner flames has been examined, motivated by recent investigations where the one-dimensionality has been questioned. The examination employs laser diagnostic techniques to measure different characteristics: temperature using rotational coherent anti-Stokes Raman spectroscopy (CARS) and soot properties using laser-induced incandescence and elastic light scattering. Special attention has been paid to the influence of an outer shroud gas flow of either nitrogen or air. The nitrogen shroud gas leads to flame cooling at the outer edge, whereas the air shroud results in heating through the oxidation of CO/H-2/soot. This generally results in a more inhomogeneous spatial particle size profile for the nitrogen shroud flame, with smaller particle sizes at the flame edge. The present results emphasize the need to characterize burner and operating conditions accurately, and also, regarding parameters that at first glance seem less relevant, such as the shroud gas, to provide useful data for comparison between laboratories.
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| 10. |
- Olofsson, Nils-Erik, et al.
(författare)
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Soot sublimation studies in a premixed flat flame using laser-induced incandescence (LII) and elastic light scattering (ELS)
- 2013
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Ingår i: Applied Physics B. - : Springer Science and Business Media LLC. - 0946-2171 .- 1432-0649. ; 112:3, s. 333-342
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Tidskriftsartikel (refereegranskat)abstract
- Laser-induced incandescence (LII) as a diagnostic technique is based on rapid heating of soot particles to temperatures of several thousand Kelvin and subsequent detection of the thermal radiation from the laser-heated particles. At such high temperatures, soot sublimation effects must be considered when estimating uncertainties in LII measurements. In this work we have investigated the use of various laser fluences in LII using a Nd:YAG laser at 1,064 nm. Using another Nd:YAG laser at 532 nm, the elastic light scattering (ELS) signal from soot particles heated by the 1,064-nm laser was monitored. This approach makes it possible to determine at which fluence of the LII laser soot sublimation starts to become visible as a decrease in the ELS signal. By performing the measurements at various heights in a premixed sooting flat ethylene/air flame, the fluence threshold above which the ELS signal decreased was found to be higher at the lower flame heights corresponding to younger, smaller and less aggregated particles. The results from this work indicate that the different fluence thresholds for sublimation may be explained by a lower absorption function E(m) for the younger soot particles.
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