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- Patriarca, Claudia, 1986-
(författare)
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Characterisation of natural dissolved organic matter with liquid chromatography and high resolution mass spectrometry
- 2020
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Dissolved organic matter (DOM) is one of the most heterogeneous and complex mixture on Earth. DOM plays a crucial role in biogeochemical processes on the global scale and it is essential to sustain and regulate the biological processes in aquatic ecosystems. DOM originates from a multitude of biological, physical and chemical transformations, leading to its phenomenal chemical diversity. In order to understand and predict its effect on the global carbon cycle, an intimate characterization at molecular level is necessary. The investigation of the extraordinary complexity of the DOM mixture represents a compelling challenge for analytical chemistry. The focus of this thesis was the development of methods for the characterization of DOM in natural waters. High resolution mass spectrometry (HRMS), was combined with high pressure liquid chromatography (HPLC) and electrospray ionization (ESI), to investigate the chemical diversity of DOM. The first study demonstrated that cutting-edge techniques (such as the Fourier-transform ion cyclotron resonance mass spectrometer - FTICR-MS), are not indispensable to disclose essential information on the DOM molecular composition, in fact the Orbitrap mass analyser is a suitable alternative for the analysis of complex natural mixtures. In the second study, the potential benefits offered by the online coupling of HPLC and HRMS instruments were explored, revealing significant advantages in terms of analysis time, achievable information and versatility of the method. The advantages of online separation were further confirmed in the third study, focused on the characterization of autochthonous labile DOM. Chromatographically resolved profiles emerged from the bulk-DOM, allowing the monitoring of labile autochthonous components in presence of heterotrophic bacteria. Despite the advantages achieved by the application of online separation, a strong limiting factor in DOM characterization is the ESI source, suitable only for the analysis of the DOM fraction susceptible to ionization. In the last study, the extent of the DOM material prone to ionization was estimated, revealing the occurrence of an extensive portion of the material resistant to routinely employed ESI approach. The full characterization of DOM is still an open challenge and the combination of multiple techniques is fundamental to unravel is extreme intricacy.
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| 2. |
- Edvardsson Rasmussen, Jesper, 1984-
(författare)
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Inner ear proteomics and barriers : Clinical and experimental findings
- 2024
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Hearing is important in many aspects of life, including communication, assessing one’s surroundings, entertainment and social interaction. Hearing loss is common and according to the Global Burden of Disease Study, 5% of the global population require hearing rehabilitation (1). Pharmacological treatment options are limited, so understanding cellular mechanisms in the damaged inner ear is crucial for developing novel therapies.In this thesis, the human inner ear proteome in patients with sporadic vestibular schwannoma (VS) and its association with hearing loss were investigated. Ototoxic effects induced by furosemide were also examined, focusing on inner ear barrier function, furosemide sensitive Na-K-Cl co-transporter 1 (NKCC1), Fetuin-A, linked to tumour-associated hearing loss, and Pigment epithelium-derived factor (PEDF), potentially important for blood-endolymph barrier integrity.Translabyrinthine surgery on 35 patients, 32 with VS and three with meningioma, provided samples from perilymph, endolymph, endolymphatic sac tissue, VS biopsies and cerebrospinal fluid (CSF) for proteome analysis. Effects of furosemide on the inner ear barriers were studied in mice using 9.4Tesla MRI, and in guinea pigs using immunohistochemistry and mRNA in situ hybridisation focusing on NKCC1, Fetuin-A, and PEDF.Proteomic analysis revealed consistent sets of proteins in perilymph (91/315) and endolymph (545/1211). The proteomes of perilymph and CSF exhibited specific differences, with proteins unique to each fluid, thereby emphasizing the distinct origin of perilymph separate from CSF. Fetuin-A was inversely related to tumour-associated hearing loss, while patients with severe to profound hearing loss exhibited upregulation of complement factor H-related protein 2 (CFHR2).Furosemide compromised the blood-endolymph barrier, allowing gadolinium contrast into scala media. It affected NKCC1 of type II fibrocytes coinciding with the onset of hearing loss following high-dose furosemide, suggesting early disruption in potassium ion recirculation. Fetuin-A and PEDF were identified in the cochlea at protein and mRNA level. Their staining intensity increased in various cochlear subsites 120 minutes after furosemide administration, indicating their involvement in the cochlear response to the effects of furosemide.In summary, this thesis uncovered significant inter-individual variability in both the perilymph and endolymph proteome, alongside a consistent subset of proteins. Further, associations between hearing loss and proteome changes suggest inflammation as a potential mechanism for hearing degradation caused by vestibular schwannomas. Experimentally, impact of furosemide on blood-inner ear barriers were visualised in vivo and type II fibrocytes were identified as potential initial targets for NKCC1 blockade. Fetuin-A and PEDF were confirmed in several cell types in the cochlea and may increase in response to very high furosemide doses.
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