| 1. |
- Carrillo, M., et al.
(författare)
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High-resolution crystal structures of transient intermediates in the phytochrome photocycle
- 2021
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Ingår i: Structure. - : Elsevier BV. - 0969-2126. ; 29:7
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Tidskriftsartikel (refereegranskat)abstract
- Phytochromes are red/far-red light photoreceptors in bacteria to plants, which elicit a variety of important physiological responses. They display a reversible photocycle between the resting Pr state and the light-activated Pfr state. Light signals are transduced as structural change through the entire protein to modulate its activity. It is unknown how the Pr-to-Pfr interconversion occurs, as the structure of intermediates remains notoriously elusive. Here, we present short-lived crystal structures of the photosensory core modules of the bacteriophytochrome from myxobacterium Stigmatella aurantiaca captured by an X-ray free electron laser 5 ns and 33 ms after light illumination of the Pr state. We observe large structural displacements of the covalently bound bilin chromophore, which trigger a bifurcated signaling pathway that extends through the entire protein. The snapshots show with atomic precision how the signal progresses from the chromophore, explaining how plants, bacteria, and fungi sense red light.
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| 2. |
- Henry, Léocadie, et al.
(författare)
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Real-time tracking of protein unfolding with time-resolved x-ray solution scattering
- 2020
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Ingår i: Structural Dynamics. - : AIP Publishing. - 2329-7778. ; 7:5
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Tidskriftsartikel (refereegranskat)abstract
- The correct folding of proteins is of paramount importance for their function, and protein misfolding is believed to be the primary cause of a wide range of diseases. Protein folding has been investigated with time-averaged methods and time-resolved spectroscopy, but observing the structural dynamics of the unfolding process in real-time is challenging. Here, we demonstrate an approach to directly reveal the structural changes in the unfolding reaction. We use nano- to millisecond time-resolved x-ray solution scattering to probe the unfolding of apomyoglobin. The unfolding reaction was triggered using a temperature jump, which was induced by a nanosecond laser pulse. We demonstrate a new strategy to interpret time-resolved x-ray solution scattering data, which evaluates ensembles of structures obtained from molecular dynamics simulations. We find that apomyoglobin passes three states when unfolding, which we characterize as native, molten globule, and unfolded. The molten globule dominates the population under the conditions investigated herein, whereas native and unfolded structures primarily contribute before the laser jump and 30 mu s after it, respectively. The molten globule retains much of the native structure but shows a dynamic pattern of inter-residue contacts. Our study demonstrates a new strategy to directly observe structural changes over the cause of the unfolding reaction, providing time- and spatially resolved atomic details of the folding mechanism of globular proteins. (C) 2020 Author(s).
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| 3. |
- Ishak, Mohd I., et al.
(författare)
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Friction at nanopillared polymer surfaces beyond Amontons’ laws : Stick-slip amplitude coefficient (SSAC) and multiparametric nanotribological properties
- 2021
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Ingår i: Journal of Colloid and Interface Science. - : Academic Press Inc.. - 0021-9797 .- 1095-7103. ; 583, s. 414-424
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Tidskriftsartikel (refereegranskat)abstract
- Frictional and nanomechanical properties of nanostructured polymer surfaces are important to their technological and biomedical applications. In this work, poly(ethylene terephthalate) (PET) surfaces with a periodic distribution of well-defined nanopillars were fabricated through an anodization/embossing process. The apparent surface energy of the nanopillared surfaces was evaluated using the Fowkes acid-base approach, and the surface morphology was characterized using scanning electron microscope (SEM) and atomic force microscope (AFM). The normal and lateral forces between a silica microparticle and these surfaces were quantified using colloidal probe atomic force microscopy (CP-AFM). The friction-load relationship followed Amonton's first law, and the friction coefficient appeared to scale linearly with the nanopillar height. Furthermore, all the nanopillared surfaces showed pronounced frictional instabilities compared to the smooth sliding friction loop on the flat control. Performing the stick–slip amplitude coefficient (SSAC) analysis, we found a correlation between the frictional instabilities and the nanopillars density, pull-off force and work of adhesion. We have summarised the dependence of the nanotribological properties on such nanopillared surfaces on five relevant parameters, i.e. pull-off force fp, Amontons’ friction coefficient μ, RMS roughness Rq, stick–slip amplitude friction coefficient SSAC, and work of adhesion between the substrate and water Wadh in a radar chart. Whilst demonstrating the complexity of the frictional behaviour of nanopillared polymer surfaces, our results show that analyses of multiparametric nanotribological properties of nanostructured surfaces should go beyond classic Amontons’ laws, with the SSAC more representative of the frictional properties compared to the friction coefficient.
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| 4. |
- Kavelaars, Annemieke, et al.
(författare)
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Stories in Molecular Medicine April 2021
- 2021
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Ingår i: Trends in Molecular Medicine. - : Elsevier. - 1471-4914 .- 1471-499X. ; 27:4, s. 293-296
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Life experiences influence our research and motivate us to ask scientific questions and shape research goals. Here, Trends in Molecular Medicine authors share their journey in science. Their portraits highlight the diversity of scientists and that there is no standard career in science. We hope that these inspiring stories will help to build bridges of understanding between science and society, and motivate others to join the melting pot of scientific disciplines united in Trends in Molecular Medicine.
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| 5. |
- Kharitonov, Dmitry S., et al.
(författare)
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Aqueous molybdate provides effective corrosion inhibition of WE43 magnesium alloy in sodium chloride solutions
- 2021
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Ingår i: Corrosion Science. - : PERGAMON-ELSEVIER SCIENCE LTD. - 0010-938X .- 1879-0496. ; 190
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Tidskriftsartikel (refereegranskat)abstract
- Corrosion and corrosion inhibition of WE43 magnesium alloy were investigated in NaCl solutions containing different amounts of sodium molybdate. Electrochemical, microscopic, and spectroscopic experiments were utilized to examine the mechanism of corrosion inhibition by molybdates. Electrochemical data showed that Na2MoO4 inhibitor provides reliable inhibition at concentrations at and above 100 mM. Raman and XPS spectroscopy demonstrated that the formed surface layer consists of mixed Mo(V, IV) species. This layer provided inhibition with an efficiency of 91-99 % after 24 h of exposure. A two-step oxidation-reduction mechanism of corrosion inhibition of the WE43 alloy by aqueous molybdates was proposed.
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| 6. |
- Panchal, V., et al.
(författare)
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Mechanical Properties of Organic Electronic Polymers on the Nanoscale
- 2022
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Ingår i: Advanced Electronic Materials. - : Wiley. - 2199-160X. ; 8:3
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Tidskriftsartikel (refereegranskat)abstract
- Organic semiconducting polymers have attractive electronic, optical, and mechanical properties that make them materials of choice for large area flexible electronic devices. In these devices, the electronically active polymer components are micrometers in size, and sport negligible performance degradation upon bending the centimeter-scale flexible substrate onto which they are integrated. A closer look at the mechanical properties of the polymers, on the grain-scale and smaller, is not necessary in large area electronic applications. In emerging micromechanical and electromechanical applications where the organic polymer elements are flexed on length scales spanning their own micron-sized active areas, it becomes important to characterize the uniformity of their mechanical properties on the nanoscale. In this work, the authors use two precision nanomechanical characterization techniques, namely, atomic force microscope based PeakForce quantitative nanomechanical mapping (PF-QNM) and nanoindentation-based dynamical mechanical analysis (nano-DMA), to compare the modulus and the viscoelastic properties of organic polymers used routinely in organic electronics. They quantitatively demonstrate that the semiconducting near-amorphous organic polymer indacenodithiophene-co-benzothiadiazole (C16-IDTBT) has a higher carrier mobility, lower modulus, and greater nanoscale modulus areal uniformity compared to the semiconducting semicrystalline organic polymer poly[2,5-bis(3-tetradecylthiophen-2-yl)thieno[3,2-b]thiophene] (C14-PBTTT). Modulus homogeneity appears intrinsic to C16-IDTBT but can be improved in C14-PBTTT upon chemical doping.
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