| 1. |
- Emerging Risk Factors, Collaboration, et al.
(författare)
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The Emerging Risk Factors Collaboration: analysis of individual data on lipid, inflammatory and other markers in over 1.1 million participants in 104 prospective studies of cardiovascular diseases
- 2007
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Ingår i: Eur J Epidemiol. - 0393-2990. ; 22:12, s. 839-69
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Tidskriftsartikel (refereegranskat)abstract
- Many long-term prospective studies have reported on associations of cardiovascular diseases with circulating lipid markers and/or inflammatory markers. Studies have not, however, generally been designed to provide reliable estimates under different circumstances and to correct for within-person variability. The Emerging Risk Factors Collaboration has established a central database on over 1.1 million participants from 104 prospective population-based studies, in which subsets have information on lipid and inflammatory markers, other characteristics, as well as major cardiovascular morbidity and cause-specific mortality. Information on repeat measurements on relevant characteristics has been collected in approximately 340,000 participants to enable estimation of and correction for within-person variability. Re-analysis of individual data will yield up to approximately 69,000 incident fatal or nonfatal first ever major cardiovascular outcomes recorded during about 11.7 million person years at risk. The primary analyses will involve age-specific regression models in people without known baseline cardiovascular disease in relation to fatal or nonfatal first ever coronary heart disease outcomes. This initiative will characterize more precisely and in greater detail than has previously been possible the shape and strength of the age- and sex-specific associations of several lipid and inflammatory markers with incident coronary heart disease outcomes (and, secondarily, with other incident cardiovascular outcomes) under a wide range of circumstances. It will, therefore, help to determine to what extent such associations are independent from possible confounding factors and to what extent such markers (separately and in combination) provide incremental predictive value.
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| 2. |
- Birney, Ewan, et al.
(författare)
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
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Tidskriftsartikel (refereegranskat)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
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| 3. |
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| 4. |
- Dekker Nitert, Marloes, et al.
(författare)
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IGF-I/insulin hybrid receptors in human endothelial cells
- 2005
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Ingår i: Molecular and Cellular Endocrinology. - : Elsevier BV. - 1872-8057 .- 0303-7207. ; 229:1-2, s. 31-37
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Tidskriftsartikel (refereegranskat)abstract
- Vascular complications are common in diabetes. IGF-I receptors (IGF-IR) and insulin receptors (IR) in endothelial cells might respond to altered levels of IGF-I and insulin, resulting in altered endothelial function in diabetes. We therefore studied IGF-IR and IR gene expression, ligand binding, receptor protein, and phosphorylation in human umbilical vein endothelial cells (HUVEC). IGF-IR mRNA was more abundant than IR mRNA in freshly isolated HUVEC (IGF-IR/IR ratio 7.1 +/- 1.5) and in cultured HUVEC (ratio 3.5 +/- 0.51). Accordingly, specific binding of (125)I-IGF-I (0.64 +/- 0.25%) was higher than that of (125)I-insulin (0.25 +/- 0.09%). Protein was detected for both receptors and IGF-I/insulin hybrid receptors. IGF-IR phosphorylation was stimulated by 10(-10) to 10(-8) M IGF-I. IR were activated by 10(-9) to 10(-8) M insulin and IGF-I. We conclude that HUVEC express more IGF-IR than IR, and also express hybrid receptors. Both IGF-I and insulin phosphorylate their own receptors but only IGF-I seems to phosphorylate hybrid receptors.
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| 5. |
- Giardino, Claudia, et al.
(författare)
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Assessment of water quality in Lake Garda (Italy) using Hyperion
- 2007
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Ingår i: Remote Sensing of Environment. - : Elsevier BV. - 0034-4257 .- 1879-0704. ; 109:2, s. 183-195
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Tidskriftsartikel (refereegranskat)abstract
- For testing the integration of the remote sensing related technologies into the water quality monitoring programs of Lake Garda (the largest Italian lake), the spatial and spectral resolutions of Hyperion and the capability of physics-based approaches were considered highly suitable. Hyperion data were acquired on 22nd July 2003 and water quality was assessed (i) defining a bio-optical model, (ii) converting the Hyperion atsensor radiances into subsurface irradiance reflectances, and (iii) adopting a bio-optical model inversion technique. The bio-optical model was parameterised using specific inherent optical properties of the lake and light field variables derived from a radiative transfer numerical model. A MODTRAN-based atmospheric correction code, complemented with an air/water interface correction was used to convert Hyperion at-sensor radiances into subsurface irradiance reflectance values. These reflectance values were comparable to in situ reflectance spectra measured during the Hyperion overpass, except at longer wavelengths (beyond 700 nm), where reflectance values were contaminated by severe atmospheric adjacency effects. Chlorophyll-a and tripton concentrations were retrieved by inverting two Hyperion bands selected using a sensitivity analysis applied to the bio-optical model. The sensitivity analysis indicated that the assessment of coloured dissolved organic matter was not achievable in this study due to the limited coloured dissolved organic matter concentration range of the lake, resulting in reflectance differences below the environmental measurement noise of Hyperion. The chlorophyll-a and tripton image-products were compared to in situ data collected during the Hyperion overpass, both by traditional sampling techniques (8 points) and by continuous flow-through systems (32 km). For chlorophyll-a the correlation coefficient between in situ point stations and Hyperion-inferred concentrations was 0.77 (data range from 1.30 to 2.16 mg m(-3)). The Hyperion-derived chlorophyll-a concentrations also match most of the flow-through transect data. For tripton, the validation was constrained by variable re-suspension phenomena. The correlation coefficient between in situ point stations and Hyperion-derived concentrations increased from 0.48 to 0.75 (data range from 0.95 to 2.13 g m(-3)) if the sampling data from the re-suspension zone was avoided. The comparison of Hyperionderived tripton concentrations and flow-through transect data exhibited a similar mismatch. The results of this research suggest further studies to address compatibilities of validation methods for water body features with a high rate of change, and to reduce the contamination by atmospheric adjacency effects on Hyperion data at longer wavelengths in Alpine environment. The transferability of the presented method to other sensors and the ability to assess water quality independent from in situ water quality data, suggest that management relevant applications for Lake Garda (and other subalpine lakes) could be supported by remote sensing.
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| 6. |
- Klimmek, Frank, et al.
(författare)
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Structure of the higher plant light harvesting complex I : in vivo characterization and structural interdependence of the Lhca proteins.
- 2005
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Ingår i: Biochemistry. - 0006-2960. ; 44:8, s. 3065-73
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Tidskriftsartikel (refereegranskat)abstract
- We have investigated the structure of the higher plant light harvesting complex of photosystem I (LHCI) by analyzing PSI-LHCI particles isolated from a set of Arabidopsis plant lines, each lacking a specific Lhca (Lhca1-4) polypeptide. Functional antenna size measurements support the recent finding that there are four Lhca proteins per PSI in the crystal structure [Ben-Shem, A., Frolow, F., and Nelson, N. (2003) Nature 426, 630-635]. According to HPLC analyses the number of pigment molecules bound within the LHCI is higher than expected from reconstitution studies or analyses of isolated native LHCI. Comparison of the spectra of the particles from the different lines reveals chlorophyll absorption bands peaking at 696, 688, 665, and 655 nm that are not present in isolated PSI or LHCI. These bands presumably originate from "gap" or "linker" pigments that are cooperatively coordinated by the Lhca and/or PSI proteins, which we have tentatively localized in the PSI-LHCI complex.
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