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| 2. |
- Menden, MP, et al.
(författare)
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
- 2019
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Ingår i: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10:1, s. 2674-
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Tidskriftsartikel (refereegranskat)abstract
- The effectiveness of most cancer targeted therapies is short-lived. Tumors often develop resistance that might be overcome with drug combinations. However, the number of possible combinations is vast, necessitating data-driven approaches to find optimal patient-specific treatments. Here we report AstraZeneca’s large drug combination dataset, consisting of 11,576 experiments from 910 combinations across 85 molecularly characterized cancer cell lines, and results of a DREAM Challenge to evaluate computational strategies for predicting synergistic drug pairs and biomarkers. 160 teams participated to provide a comprehensive methodological development and benchmarking. Winning methods incorporate prior knowledge of drug-target interactions. Synergy is predicted with an accuracy matching biological replicates for >60% of combinations. However, 20% of drug combinations are poorly predicted by all methods. Genomic rationale for synergy predictions are identified, including ADAM17 inhibitor antagonism when combined with PIK3CB/D inhibition contrasting to synergy when combined with other PI3K-pathway inhibitors in PIK3CA mutant cells.
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| 3. |
- Milstead, David A., et al.
(författare)
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The active muon shield in the SHiP experiment
- 2017
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Ingår i: Journal of Instrumentation. - 1748-0221 .- 1748-0221. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- The SHiP experiment is designed to search for very weakly interacting particles beyond the Standard Model which are produced in a 400 GeV/c proton beam dump at the CERN SPS. An essential task for the experiment is to keep the Standard Model background level to less than 0.1 event after 2 x 10(20) protons on target. In the beam dump, around 10(11) muons will be produced per second. The muon rate in the spectrometer has to be reduced by at least four orders of magnitude to avoid muon-induced combinatorial background. A novel active muon shield is used to magnetically deflect the muons out of the acceptance of the spectrometer. This paper describes the basic principle of such a shield, its optimization and its performance.
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| 4. |
- Ahdida, C., et al.
(författare)
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Fast simulation of muons produced at the SHiP experiment using Generative Adversarial Networks
- 2019
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Ingår i: Journal of Instrumentation. - : IOP PUBLISHING LTD. - 1748-0221 .- 1748-0221. ; 14
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Tidskriftsartikel (refereegranskat)abstract
- This paper presents a fast approach to simulating muons produced in interactions of the SPS proton beams with the target of the SHiP experiment. The SHIP experiment will be able to search for new long-lived particles produced in a 400 GeV/c SPS proton beam dump and which travel distances between fifty metres and tens of kilometers. The SHiP detector needs to operate under ultra-low background conditions and requires large simulated samples of muon induced background processes. Through the use of Generative Adversarial Networks it is possible to emulate the simulation of the interaction of 400 GeV/c proton beams with the SHiP target, an otherwise computationally intensive process. For the simulation requirements of the SHiP experiment, generative networks are capable of approximating the full simulation of the dense fixed target, offering a speed increase by a factor of O(10(6)). To evaluate the performance of such an approach, comparisons of the distributions of reconstructed muon momenta in SHiP's spectrometer between samples using the full simulation and samples produced through generative models are presented. The methods discussed in this paper can be generalised and applied to modelling any non-discrete multi-dimensional distribution.
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| 5. |
- Ahdida, C., et al.
(författare)
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Sensitivity of the SHiP experiment to Heavy Neutral Leptons
- 2019
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Ingår i: Journal of High Energy Physics (JHEP). - 1126-6708 .- 1029-8479. ; :4
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Tidskriftsartikel (refereegranskat)abstract
- Heavy Neutral Leptons (HNLs) are hypothetical particles predicted by many extensions of the Standard Model. These particles can, among other things, explain the origin of neutrino masses, generate the observed matter-antimatter asymmetry in the Universe and provide a dark matter candidate. The SHiP experiment will be able to search for HNLs produced in decays of heavy mesons and travelling distances ranging between O(50 m) and tens of kilometers before decaying. We present the sensitivity of the SHiP experiment to a number of HNL's benchmark models and provide a way to calculate the SHiP's sensitivity to HNLs for arbitrary patterns of flavour mixings. The corresponding tools and data files are also made publicly available.
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| 6. |
- Ahdida, C., et al.
(författare)
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The experimental facility for the Search for Hidden Particles at the CERN SPS
- 2019
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Ingår i: Journal of Instrumentation. - : Institute of Physics Publishing (IOPP). - 1748-0221 .- 1748-0221. ; 14
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Tidskriftsartikel (refereegranskat)abstract
- The Search for Hidden Particles (SHiP) Collaboration has shown that the CERN SPS accelerator with its 400 GeV/c proton beam offers a unique opportunity to explore the Hidden Sector [1-3]. The proposed experiment is an intensity frontier experiment which is capable of searching for hidden particles through both visible decays and through scattering signatures from recoil of electrons or nuclei. The high-intensity experimental facility developed by the SHiP Collaboration is based on a number of key features and developments which provide the possibility of probing a large part of the parameter space for a wide range of models with light long-lived super-weakly interacting particles with masses up to O(10) GeV/c(2) in an environment of extremely clean background conditions. This paper describes the proposal for the experimental facility together with the most important feasibility studies. The paper focuses on the challenging new ideas behind the beam extraction and beam delivery, the proton beam dump, and the suppression of beam-induced background.
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| 7. |
- Bradač, M., et al.
(författare)
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ALMA [C II] 158 μm Detection of a Redshift 7 Lensed Galaxy behind RX J1347.1-1145
- 2017
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Ingår i: Astrophysical Journal Letters. - : Institute of Physics Publishing (IOPP). - 2041-8205 .- 2041-8213. ; 836:1
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Tidskriftsartikel (refereegranskat)abstract
- We present the results of ALMA spectroscopic follow-up of a z =6.766 Lyα emitting galaxy behind the cluster RX J1347.1-1145. We report the detection of [C ii] 158 μm line fully consistent with the Lyα redshift and with the peak of the optical emission. Given the magnification of μ =5.0 ±0.3, the intrinsic (corrected for lensing) luminosity of the [C ii] line is L [C ii] = 1.4+0.2-0.3 × 107 L⊙, roughly ∼5 times fainter than other detections of z ∼ 7 galaxies. The result indicates that low L [C ii] in z ∼ 7 galaxies compared to the local counterparts might be caused by their low metallicities and/or feedback. The small velocity offset (δv = 20+140-40 Km s-1) between the Lyα and [C ii] line is unusual, and may be indicative of ionizing photons escaping.
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| 8. |
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| 9. |
- Bransen, J., et al.
(författare)
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Linearly ordered attribute grammar scheduling using SAT-solving
- 2015
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Ingår i: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - Berlin, Heidelberg : Springer Berlin Heidelberg. - 1611-3349 .- 0302-9743. ; 9035, s. 289-303
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Konferensbidrag (refereegranskat)abstract
- Many computations over trees can be specified using attribute grammars. Compilers for attribute grammars need to find an evaluation order (or schedule) in order to generate efficient code. For the class of linearly ordered attribute grammars such a schedule can be found statically, but this problem is known to be NP-hard. In this paper, we show how to encode linearly ordered attribute grammar scheduling as a SAT-problem. For such grammars it is necessary to ensure that the dependency graph is cycle free, which we approach in a novel way by transforming the dependency graph to a chordal graph allowing the cycle freeness to be efficiently expressed and computed using SAT solvers. There are two main advantages to using a SAT-solver for scheduling: (1) the scheduling algorithm runs faster than existing scheduling algorithms on real-world examples, and (2) by adding extra constraints we obtain fine-grained control over the resulting schedule, thereby enabling new scheduling optimisations.
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| 10. |
- Calil Kores, Cristine, et al.
(författare)
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Temperature dependence of the resonance line of optically pumped distributed-feedback lasers
- 2018
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Ingår i: Optics InfoBase Conference Papers. - : OSA - The Optical Society. - 9781943580484
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Konferensbidrag (refereegranskat)abstract
- We characterize experimentally and theoretically a distributed-feedback laser resonator subject to a thermal chirp. The total accumulated phase shift determines the resonance wavelength. The reflectivities (outcoupling losses) at the resonance wavelength govern the resonance linewidth.
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