| 1. |
- Mahajan, Anubha, et al.
(author)
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Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation
- 2022
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In: Nature Genetics. - : Springer Nature. - 1061-4036 .- 1546-1718. ; 54:5, s. 560-572
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Journal article (peer-reviewed)abstract
- We assembled an ancestrally diverse collection of genome-wide association studies (GWAS) of type 2 diabetes (T2D) in 180,834 affected individuals and 1,159,055 controls (48.9% non-European descent) through the Diabetes Meta-Analysis of Trans-Ethnic association studies (DIAMANTE) Consortium. Multi-ancestry GWAS meta-analysis identified 237 loci attaining stringent genome-wide significance (P < 5 x 10(-9)), which were delineated to 338 distinct association signals. Fine-mapping of these signals was enhanced by the increased sample size and expanded population diversity of the multi-ancestry meta-analysis, which localized 54.4% of T2D associations to a single variant with >50% posterior probability. This improved fine-mapping enabled systematic assessment of candidate causal genes and molecular mechanisms through which T2D associations are mediated, laying the foundations for functional investigations. Multi-ancestry genetic risk scores enhanced transferability of T2D prediction across diverse populations. Our study provides a step toward more effective clinical translation of T2D GWAS to improve global health for all, irrespective of genetic background. Genome-wide association and fine-mapping analyses in ancestrally diverse populations implicate candidate causal genes and mechanisms underlying type 2 diabetes. Trans-ancestry genetic risk scores enhance transferability across populations.
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| 2. |
- Kattge, Jens, et al.
(author)
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TRY plant trait database - enhanced coverage and open access
- 2020
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In: Global Change Biology. - : Wiley-Blackwell. - 1354-1013 .- 1365-2486. ; 26:1, s. 119-188
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Journal article (peer-reviewed)abstract
- Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
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| 3. |
- Kumar, M., et al.
(author)
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Frontier review on the propensity and repercussion of SARS-CoV-2 migration to aquatic environment
- 2020
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In: Journal of Hazardous Materials Letters. - : Elsevier BV. - 2666-9110. ; 1
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Journal article (peer-reviewed)abstract
- Increased concern has recently emerged pertaining to the occurrence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in aquatic environment during the current coronavirus disease 2019 (COVID-19) pandemic. While infectious SARS-CoV-2 has yet to be identified in the aquatic environment, the virus potentially enters the wastewater stream from patient excretions and a precautionary approach dictates evaluating transmission pathways to ensure public health and safety. Although enveloped viruses have presumed low persistence in water and are generally susceptible to inactivation by environmental stressors, previously identified enveloped viruses persist in the aqueous environment from days to several weeks. Our analysis suggests that not only the surface water, but also groundwater, represent SARS-CoV-2 control points through possible leaching and infiltrations of effluents from health care facilities, sewage, and drainage water. Most fecally transmitted viruses are highly persistent in the aquatic environment, and therefore, the persistence of SARS-CoV-2 in water is essential to inform its fate in water, wastewater and groundwater and subsequent human exposure.
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| 4. |
- Cruz-Uribe, A. M., et al.
(author)
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Trace element and isotopic zoning of garnetite veins in amphibolitized eclogite, Franciscan Complex, California, USA
- 2021
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In: Contributions to Mineralogy and Petrology. - : Springer Science and Business Media LLC. - 0010-7999 .- 1432-0967. ; 176:5
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Journal article (peer-reviewed)abstract
- Here we present major element, trace element, and oxygen isotope data for garnet from an amphibolitized eclogite block from Ring Mountain, Franciscan Complex, California, USA. Garnetite veins 1-5 cm thick are laterally continuous up to 10 m within an Mg-rich blackwall zone of the eclogite block. Complex major and trace element zoning patterns reveal multiple stages of garnet growth in both the matrix and garnetite veins. Similarities in major and trace element zoning between matrix and vein garnet suggest that crystallization of the garnetite veins began toward the end of matrix garnet core growth, and continued throughout the garnet growth history of the rock. Oscillatory zoning in rare-earth elements suggests garnet growth in pulses, with matrix-diffusion-limited growth in between pulses. Oxygen isotope analyses of matrix and vein garnet have a range in delta O-18 values of 5.3-11.1 parts per thousand. Differences in delta O-18 values of up to similar to 4 parts per thousand between garnet core and rim are observed in both the matrix and vein; garnet cores range from 9.8 to 11.1 parts per thousand (median 10.4 parts per thousand), garnet mantles range from 8.3 to 10.0 parts per thousand (median 9.7 parts per thousand), and garnet rims range from 5.8 to 7.8 parts per thousand (median 6.7 parts per thousand). Late-stage vein crystallization appears as a garnet "cement" that fills in a network of small (typically 5-50 mu m) garnet cores, and likely crystallized from an amorphous phase. The low delta O-18 values of this latest stage of garnet growth are consistent with interaction with serpentinites, and likely represent the physical incorporation of the eclogite block into the serpentinite matrix melange.
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| 5. |
- Kumar, M., et al.
(author)
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A chronicle of SARS-CoV-2 : Seasonality, environmental fate, transport, inactivation, and antiviral drug resistance
- 2021
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In: Journal of Hazardous Materials. - : Elsevier B.V.. - 0304-3894 .- 1873-3336. ; 405
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Journal article (peer-reviewed)abstract
- In this review, we present the environmental perspectives of the viruses and antiviral drugs related to SARS-CoV-2. The present review paper discusses occurrence, fate, transport, susceptibility, and inactivation mechanisms of viruses in the environment as well as environmental occurrence and fate of antiviral drugs, and prospects (prevalence and occurrence) of antiviral drug resistance (both antiviral drug resistant viruses and antiviral resistance in the human). During winter, the number of viral disease cases and environmental occurrence of antiviral drug surge due to various biotic and abiotic factors such as transmission pathways, human behaviour, susceptibility, and immunity as well as cold climatic conditions. Adsorption and persistence critically determine the fate and transport of viruses in the environment. Inactivation and disinfection of virus include UV, alcohol, and other chemical-base methods but the susceptibility of virus against these methods varies. Wastewater treatment plants (WWTPs) are major reserviors of antiviral drugs and their metabolites and transformation products. Ecotoxicity of antiviral drug residues against aquatic organisms have been reported, however more threatening is the development of antiviral resistance, both in humans and in wild animal reservoirs. In particular, emergence of antiviral drug-resistant viruses via exposure of wild animals to high loads of antiviral residues during the current pandemic needs further evaluation.
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