| 1. |
- Andresen, Louise C., 1974, et al.
(författare)
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Depolymerization and mineralization – investigating N availability by a novel 15N tracing model
- 2016
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Ingår i: SOIL. - : Copernicus GmbH. - 2199-398X. ; 2:3, s. 433-442
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Depolymerization of soil organic matter such as proteins and peptides into monomers (e.g. amino acids) is currently thought to be the rate limiting step for N availability in terrestrial N cycles. The mineralization of free amino acids (FAA), liberated by depolymerization of peptides, is an important fraction of the total N mineralization. Accurate assessment 10 of peptide depolymerization and FAA mineralization rates is important in order to gain a better understanding of the N cycle dynamics. Due to the short time span, soil disturbance and unnatural high FAA content during the first few hours after the labelling with the traditional 15N pool dilution experiments, analytical models might overestimate peptide depolymerization rate. In this paper, we present an extended numerical 15N tracing model Ntrace which incorporates the FAA pool and related N processes in order to 1) provide a more robust and coherent estimation of production and mineralization rates of FAAs; 2) 15 and 2) suggest an amino acid N use efficiency (NUEFAA) for soil microbes, which is a more realistic estimation of soil microbial NUE compared to the NUE estimated by analytical methods. We compare analytical and numerical approaches for two forest soils; suggest improvements of the experimental work for future studies; and conclude that: i) FAA mineralization might be as equally an important rate limiting step for gross N mineralization as peptide depolymerization rate is, because about half of all depolymerized peptide N is consecutively being mineralized; and that ii) FAA mineralization and FAA 20 immobilization rates should be used for assessing NUEFAA.
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| 2. |
- Andresen, Louise C., 1974, et al.
(författare)
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Simultaneous quantification of depolymerization and mineralization rates by a novel 15N tracing model
- 2016
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Ingår i: SOIL. - : Copernicus GmbH. - 2199-398X. ; 2, s. 433-442
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Tidskriftsartikel (refereegranskat)abstract
- The depolymerization of soil organic matter, such as proteins and (oligo-)peptides, into monomers (e.g. amino acids) is currently considered to be the rate-limiting step for nitrogen (N) availability in terrestrial ecosystems. The mineralization of free amino acids (FAAs), liberated by the depolymerization of peptides, is an important fraction of the total mineralization of organic N. Hence, the accurate assessment of peptide depoly- merization and FAA mineralization rates is important in order to gain a better process-based understanding of the soil N cycle. In this paper, we present an extended numerical 15 N tracing model Ntrace , which incorporates the FAA pool and related N processes in order to provide a more robust and simultaneous quantification of de- polymerization and gross mineralization rates of FAAs and soil organic N. We discuss analytical and numerical approaches for two forest soils, suggest improvements of the experimental work for future studies, and conclude that (i) when about half of all depolymerized peptide N is directly mineralized, FAA mineralization can be as important a rate-limiting step for total gross N mineralization as peptide depolymerization rate; (ii) gross FAA mineralization and FAA immobilization rates can be used to develop FAA use efficiency (NUEFAA), which can reveal microbial N or carbon (C) limitation.
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| 3. |
- Aurangojeb, Mohammad, et al.
(författare)
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Nitrous oxide emissions from Norway spruce forests on drained organic and mineral soil
- 2017
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Ingår i: Canadian Journal of Forest Research. - : Canadian Science Publishing. - 0045-5067 .- 1208-6037. ; 47:11, s. 1482-1487
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Tidskriftsartikel (refereegranskat)abstract
- Nitrous oxide (N2O) emissions from drained organic (Histosol) and mineral (Umbrisol) soils having a 60 year old Norway spruce (Picea abies (L.) Karst.) forest in a catchment in southwest Sweden were measured using static closed chambers every other week over 3 years (August 2010 - July 2013). High emissions were observed during the summer months for both sites, which were significantly higher for the drained organic soils compared to the mineral soils: average emissions of 49.0 +/- 3.3 and 8.0 +/- 3.3 mu g N2O.m(-2).h(-1), respectively. As the experiment was designed to have similar forest and weather conditions for both sites, these were omitted as explanatory factors for the emission difference. Initially, the soil organic matter concentration (percent by mass) difference was thought to be the cause. However, the results found that the soil organic matter amount per square metre of top soil was similar at both sites, suggesting other possible explanations. We propose that the most plausible explanation is that higher tree growth and mycorrhizal nitrogen demand reduce nitrogen availability contributing to the lower N2O emissions from the mineral soil site.
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| 4. |
- Banzhaf, Stefan, 1980, et al.
(författare)
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Hydrogeological and geophysical investigations to evaluate groundwater influences on GHG emissions at the national research site Skogaryd
- 2015
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Ingår i: EGU General Assembly 2015. ; 17
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- The overall objective of the presented study is to explore the impact of groundwater fluctuations on greenhouse gas (GHG) emissions from peatlands and in particular from drained organic soils. The hypothesis is that drained organic soils react sensitively to changing water content, i.e. that frequent changes of groundwater level enhance the emissions of GHG from these soils and thus contribute significantly to global warming. The area under investigation is based at the Skogaryd Research Catchment (within Swedish Infrastructure for Ecosystem Sciences, SITES) in western Sweden (Meyer, et al., 2013), which was recently assigned the status of a national research site by the Swedish research council (www.vr.se). Skogaryd is a unique place in Sweden for doing research on organic soils as the area was simultaneously afforested in the 1960s and the drained fertile soils have a different land-use history. The ditching for drainage purposes throughout the entire area has had and still has a huge influence on groundwater level, which in turn is assumed to trigger GHG emissions from the organic soils at Skogaryd. To address the influence of groundwater dynamics on GHG emissions in this system, a characterisation of the subsurface using electrical resistivity and Ground Penetrating Radar (GPR) measurements was carried out. These geophysical measurements were combined with drilling along them to allow for ground truthing. An average peat thickness of around 3 m was estimated for the field site. Below the peat follows a fine sand layer, which reaches a maximum thickness of around 1.0 m right at the valley borders and thins out significantly towards the middle of the valley. Below the fine sand layer follows a layer of marine clay, which extends down to the bedrock at depths between 12 and 15 m below ground surface. The results show that the peat layer in Skogaryd forms an isolated hydraulic system without interaction with deeper or regional groundwater systems. The continuously extending clay layer hinders water moving downward or upward crossing the border of peat and clay. The peat layer is a fast reacting hydraulic system that shows immediate reaction to precipitation or drought and is independent from regional groundwater levels. The study of groundwater controls on the GHG from the drained organic soils at Skogaryd can thus focus on the fast reacting peat layer. Future investigations will show if this conclusion can be generalized for similar situations in Sweden. Geophysical measurements have proved to be a valuable method for estimating the peat thickness over a large area. Meyer A, Tarvainen L, Nousratpour A, Björk RG, Ernfors M, Grelle A, Kasimir Klemedtsson Å, Lindroth A, Räntfors M, Rütting T, Wallin G, Weslien P, Klemedtsson L (2013) A fertile peatland forest does not constitute a major greenhouse gas sink. Biogeosciences 10: 7739-7758 DOI 10.5194/bg-10-7739-2013
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| 5. |
- Boudreault, Louis-Etienne, et al.
(författare)
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A LiDAR method of canopy structure retrieval for wind modeling of heterogeneous forests
- 2015
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Ingår i: Agricultural and Forest Meteorology. - : Elsevier BV. - 1873-2240 .- 0168-1923. ; 201, s. 86-97
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Tidskriftsartikel (refereegranskat)abstract
- The difficulty of obtaining accurate information about the canopy structure is a current limitation towards higher accuracy in numerical predictions of the wind field in forested terrain. The canopy structure in computational fluid dynamics is specified through the frontal area density and this information is required for each grid point in the three-dimensional computational domain. By using raw data from aerial LiDAR scans together with the Beer-Lambert law, we propose and test a method to calculate and grid highly variable and realistic frontal area density input. An extensive comparison with ground-based measurements of the vertically summed frontal area density (or plant area index) and tree height was used to optimize the method, both in terms of plant area index magnitude and spatial variability. The resolution of the scans was in general low (<2.5 reflections m(-2)). A decrease of the resolution produced an increasing systematic underestimation of the spatially averaged tree height, whereas the mean plant area index remained insensitive. The gridded frontal area density and terrain elevation were used at the lower boundary of wind simulations in a 5 km x 5 km area of a forested site. The results of the flow simulations were compared to wind measurements using a vertical array of sonic anemometers. A good correlation was found for the mean wind speed of two contrasting wind directions with different influences from the upstream forest. The results also predicted a high variability on the horizontal and vertical mean wind speed, in close correlation with the canopy structure. The method is a promising tool for several computational fluid dynamics applications requiring accurate predictions of the near-surface wind field. (C) 2014 The Authors. Published by Elsevier B.V.
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| 6. |
- Campeau, A., et al.
(författare)
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Stable Carbon Isotopes Reveal Soil-Stream DIC Linkages in Contrasting Headwater Catchments
- 2018
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Ingår i: Journal of Geophysical Research-Biogeosciences. - : American Geophysical Union (AGU). - 2169-8953 .- 2169-8961. ; 123:1, s. 149-167
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Tidskriftsartikel (refereegranskat)abstract
- Large CO2 evasion to the atmosphere occurs as dissolved inorganic carbon (DIC) is transported from soils to streams. While this physical process has been the focus of multiple studies, less is known about the underlying biogeochemical transformations that accompany this transfer of C from soils to streams. Here we used patterns in stream water and groundwater C-13-DIC values within three headwater catchments with contrasting land cover to identify the sources and processes regulating DIC during its transport. We found that although considerable CO2 evasion occurs as DIC is transported from soils to streams, there were also other processes affecting the DIC pool. Methane production and mixing of C sources, associated with different types and spatial distribution of peat-rich areas within each catchment, had a significant influence on the C-13-DIC values in both soils and streams. These processes represent an additional control on C-13-DIC values and the catchment-scale cycling of DIC across different northern landscape types. The results from this study demonstrate that the transport of DIC from soils to streams results in more than just rapid CO2 evasion to the atmosphere but also represents a channel of C transformation, which questions some of our current conceptualizations of C cycling at the landscape scale. Plain Language Summary Large carbon dioxide emission to the atmosphere occurs as rainwater percolates through soils and into streams. This physical process is important for the global carbon cycle and has been the focus of multiple studies. However, less is known about the underlying processes that accompanies this transfer of carbon dioxide from soils to streams. Here we analyze the stable isotope composition of soil and stream carbon dioxide and demonstrate that methane production and mixing of carbon sources also occur in soils and streams. These processes were linked to different types and configurations of peat-rich areas, for example, bogs, fens, and riparian zones, found within each of the three studied catchments. Our results therefore demonstrate that the export of carbon dioxide from soils to streams not only results in emissions to the atmosphere but also represents a channel of transformation. This questions some of our current conceptualization of the catchment-scale cycling of carbon dioxide.
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| 7. |
- de Beeck, M. O., et al.
(författare)
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Soil-meteorological measurements at ICOS monitoring stations in terrestrial ecosystems
- 2018
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Ingår i: International Agrophysics. - : Walter de Gruyter GmbH. - 0236-8722 .- 2300-8725. ; 32:4, s. 619-631
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Tidskriftsartikel (refereegranskat)abstract
- The Integrated Carbon Observation System is a pan-European research infrastructure providing standardized, long-term observations of greenhouse gas concentrations and earth-atmosphere greenhouse gas interactions. The terrestrial component of Integrated Carbon Observation System comprises a network of monitoring stations in terrestrial ecosystems where the principal activity is the measurement of ecosystem-atmosphere fluxes of greenhouse gases and energy by means of the eddy covariance technique. At each station a large set of ancillary variables needed for the interpretation of observed fluxes and for process studies is additionally monitored. This set includes a subset of variables that describe the thermal and moisture conditions of the soil and which are here conveniently referred to as soil-meteorological variables: soil temperature, volumetric soil water content, water table depth, and soil heat flux density. This paper describes the standard methodology that has been developped for the monitoring of these variables at the ecosystem stations.
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| 8. |
- Franz, D, et al.
(författare)
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Towards long-term standardised carbon and greenhouse gas observations for monitoring Europe´s terrestrial ecosystems: a review
- 2018
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Ingår i: International Agrophysics. - : Walter de Gruyter GmbH. - 0236-8722 .- 2300-8725. ; 32, s. 439-455
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Tidskriftsartikel (refereegranskat)abstract
- Research infrastructures play a key role in launching a new generation of integrated long-term, geographically distributed observation programmes designed to monitor climate change, better understand its impacts on global ecosystems, and evaluate possible mitigation and adaptation strategies. The pan-European Integrated Carbon Observation System combines carbon and greenhouse gas (GHG; CO2, CH4, N2O, H2O) observations within the atmosphere, terrestrial ecosystems and oceans. High-precision measurements are obtained using standardised methodologies, are centrally processed and openly available in a traceable and verifiable fashion in combination with detailed metadata. The Integrated Carbon Observation System ecosystem station network aims to sample climate and land-cover variability across Europe. In addition to GHG flux measurements, a large set of complementary data (including management practices, vegetation and soil characteristics) is collected to support the interpretation, spatial upscaling and modelling of observed ecosystem carbon and GHG dynamics. The applied sampling design was developed and formulated in protocols by the scientific community, representing a trade-off between an ideal dataset and practical feasibility. The use of open-access, high-quality and multi-level data products by different user communities is crucial for the Integrated Carbon Observation System in order to achieve its scientific potential and societal value.
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| 9. |
- He, Hongxing, 1987, et al.
(författare)
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Factors controlling Nitrous Oxide emission from a spruce forest ecosystem on drained organic soil, derived using the CoupModel
- 2016
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Ingår i: Ecological Modelling. - : Elsevier. - 0304-3800 .- 1872-7026. ; 321, s. 46-63
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Tidskriftsartikel (refereegranskat)abstract
- High Nitrous Oxide (N2O) emissions have been identified in hemiboreal forests in association with draining organic soils. However, the specific controlling factors that regulate the emissions remain unclear. To examine the importance of different factors affecting N2O emissions in a spruce forest on drained organic soil, a process-based model, CoupModel, was calibrated using the generalized likelihood uncertainty estimation (GLUE) method. The calibration also aims to estimate parameter density distributions, the covariance matrix of estimated parameters and the correlation between parameters and variables information, useful when applying the model on other peat soil sites and for further model improvements. The calibrated model reproduced most of the high resolution data (total net radiation, soil temperature, groundwater level, net ecosystem exchange, etc.) very well, as well as cumulative measured N2O emissions (simulated 8.7±1.1kgN2Oha-1year-1 (n=97); measured 8.7±2.7kgN2Oha-1year-1 (n=6)), but did not capture every measured peak. Parameter uncertainties were reduced after calibration, in which 16 out of 20 parameters changed from uniform distributions into normal distributions or log normal distributions. Four parameters describing bypass water flow, oxygen diffusion and soil freezing changed significantly after calibration. Inter-connections and correlations between many calibrated parameters and variables reflect the complex and interrelated nature of pedosphere, biosphere and atmosphere interactions. This also highlights the need to calibrate a number of parameters simultaneously. Model sensitivity analysis indicated that N2O emissions during growing seasons are controlled by competition between plants and microbes for nitrogen, while during the winter season snow melt periods are important. Our results also indicate that N2O is mainly produced in the capillary fringe close to the groundwater table by denitrification in the anaerobic zone. We conclude that, in afforested drained peatlands, the plants and groundwater level have important influences on soil N availability, ultimately controlling N2O emissions.
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| 10. |
- He, Hongxing, 1987, et al.
(författare)
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Forests on drained agricultural peatland are potentially large sources of greenhouse gases – insights from a full rotation period simulation
- 2015
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Ingår i: Biogeosciences Discussions. - : Copernicus GmbH. - 1810-6277. ; 12, s. 19673-19710
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Tidskriftsartikel (refereegranskat)abstract
- The CoupModel was used to simulate a Norway Spruce forest on fertile drained peat over 60 years, from planting in 1951 until 2011, describing abiotic, biotic and greenhouse gas (GHG) emissions (CO2 and N2O). By calibrating the model against tree ring data we obtained a "reference" model by which we were able to describe the fluxes and controlling factors over the 60 years. We discuss some conceptual issues relevant to improving the model in order to better understand peat soil simulations. However, the present model was able to describe the most important ecosystem dynamics such as the plant biomass development and GHG emissions. The GHG fluxes are composed of two important quantities, the forest carbon (C) uptake, 405 g C m−2 yr−1 and the decomposition of peat soil, 396 g C m−2 yr−1. N2O emissions contribute to the GHG emissions by 0.5 g N m−2 yr−1, corresponding to 56.8 g C m−2 yr−1. The 60-year-old Spruce forest has an accumulated biomass of 164 Mg C ha−1. However, over this period 208 Mg C ha−1 GHG has been added to the atmosphere, which means a net addition of GHG emissions. The main losses are from the peat soil and, indirectly, from forest thinning products, which we assume have a short lifetime. We conclude that after harvest at an age of 80 years, most of the stored biomass carbon is liable to be released, the system having captured C only temporarily and with a cost of disappeared peat, adding CO2 to the atmosphere.
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