| 1. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
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| 3. |
- Ji-Young, Ahn, et al.
(författare)
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Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.
- 2010
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 9:11, s. 5568-5573
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Tidskriftsartikel (refereegranskat)abstract
- Sensitive detection of molecular biomarkers in clinical samples is crucially important in disease diagnostics. This paper reports the developement of an aptamer microarray platform combined with sol-gel technology to identify low-abundance targets in complex serum samples. Because of the nanoporous structure of the sol-gel, a high capacity to immobilize the affinity specific aptamers is accomplished which allows binding and detection of target molecules with high sensitivity. The captured protein is digested in situ and the obtained digest was analyzed by ESI-MS without any interference from the affinity probe. TBP (TATA Box Protein) and its specific aptamers were chosen as a model system. A proof of concept with protein concentrations ranging between nanomolar to micromolar is reported, showing a good linearity up to 400 nM when characterized in an aptamer sandwich assay. Moreover, as low as 0.001% of target protein present in total serum proteins could be identified without any pretreatment step using ESI MS/MS mass spectrometry. We believe this novel strategy could become an efficient method for aptamer-based biomarker detection linked directly to mass spectrometry readout.
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| 4. |
- Baek, In Hyung, et al.
(författare)
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Single-walled carbon nanotube saturable absorber assisted high-power mode-locking of a Ti:sapphire laser
- 2011
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Ingår i: Optics Express. - 1094-4087. ; 19:8, s. 7833-7838
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Tidskriftsartikel (refereegranskat)abstract
- We report on passive mode-locking of a Ti:sapphire laser employing a single-walled carbon nanotube saturable absorber (SWCNT-SA) specially designed and fabricated for wavelengths near 800 nm. Mode-locked pulses as short as 62 fs were generated at a repetition rate of 99.4 MHz. We achieved output powers from the SWCNT-SA mode-locked laser as high as 600 mW with a slope efficiency of 26%. The characteristics of SWCNT-SA-assisted mode-locking were compared with those of Kerr-lens mode-locking without SWCNT-SA.
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| 6. |
- Sung, Ki Won, et al.
(författare)
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Apparatus and Method for IDcell Allocation in a Broadband Wireless Communication System
- 2011
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Patent (populärvet., debatt m.m.)abstract
- An apparatus and a method for allocating IDcells in a wireless communication system are provided, in which an initial IDcell allocation is performed by allocating entire sectors to elements of an N×M IDcell matrix, a sector pair with the highest proximity is selected for each IDcell in the initial allocation, an IDcell with a sector pair having the highest of the proximities of the selected sector pairs is determined as a target IDcell, one sector of the sector pair with the highest proximity for the target IDcell is selected as a target sector, a predetermined number of sectors are selected for each of the other IDcells except for the target IDcell, from among sectors to which the each of the other IDcells is allocated, and the IDcell of the target sector is swapped with the IDcell of a sector satisfying a first condition among the selected sectors.
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