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- Curtsdotter, Alva, 1983-
(författare)
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Extinctions in Ecological Communities : direct and indirect effects of perturbation on biodiversity
- 2014
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- In the dawning of what may become Earth’s 6th mass extinction the topic of this thesis, understanding extinction processes and what determines the magnitude of species loss, has become only too relevant. The number of known extinctions (~850) during the last centuries translates to extinction rates elevated above the background rate, matching those of previous mass extinction events. The main drivers of these extinctions have been human land use, introduction of exotic species and overexploitation. Under continued anthropogenic pressure and climate change, the current extinction rates are predicted to increase tenfold.Large perturbations, such as the extinction drivers mentioned above, affects species directly, causing a change in their abundance. As species are not isolated, but connected to each other through a multitude of interactions, the change in abundance of one species can in turn affect others. Thus, in addition to the direct effect, a perturbation can affect a species indirectly through the ecological network in which the species is embedded. With this thesis, I wish to contribute to our basic understanding of these indirect effects and the role they play in determining the magnitude of species loss. All the studies included here are so called in silico experiments, using mathematical models to describe ecological communities and computer simulations to observe the response of these communities to perturbation.When a perturbation is severe enough, a species will be driven to extinction. The loss of a species from a system is in itself a large perturbation, and may result in further extinctions, so called secondary extinctions. The traits of the species initially lost, can be a potential predictor of the magnitude of secondary species loss. In Paper I of this thesis, I show that when making such predictions, it is important to incorporate temporally dynamic species interactions and abundances, in order not to underestimate the importance of certain species, such as top predators.I further show that species traits alone are not particularly good predictors of secondary extinction risk (Paper I), but that in combination with community level properties they are (Paper II). Indeed, there seems to be an interaction such that the specific property making a community prone to secondary species loss, depends on what kind of species was lost in the primary extinction. As different types of perturbation put different types of species at risk of (primary) extinction, this means that the specific property making a community prone to secondary species loss, will depend on the type of perturbation the community is subjected to.One of the predicted main drivers of future species extinction is climate change. If the local climate becomes adverse, a species can either migrate to new and better areas or stay and evolve. Both these processes will be important in determining the magnitude of species loss under climate change. However, migration and evolution do not occur in vacuum – the biotic community in which these processes play out may modulate their effect on biodiversity. In paper III, I show that the strength of competition between species modulates the effect of both dispersal and evolution on the magnitude of species loss under climate change. The three-way interaction between interspecific competition, evolution and dispersal, creates a complex pattern of biodiversity responses, in which both evolution and dispersal can either increase or decrease the magnitude of species loss. Thus, when species interactions are incorporated, it is clear that even though migration and evolution may alleviate the impact of climate change for some species, they may indirectly aggravate the situation for others.In Paper III, the aspect of climate change incorporated in the model is an increase in mean annual temperature. But climate change is also predicted to increase environmental variability. Paper IV shows that species-rich communities are more sensitive to high environmental variability than species-poor ones. The smaller population sizes in the species-rich communities increased the extinction risk connected to population fluctuations driven by the variable environment. Hence, systems such as tropical forests and coral reefs are predicted to be particularly sensitive to the increased variability that may follow with climate change.In Paper IV, primary extinctions of primary producers result in extinction cascades of consumer species, when they lose their prey. However, in reality a consumer species might be able to switch to another prey, and such flexibility has both been observed and suggested as a potential rescue mechanism. But what is beneficial for an individual predator in the short-term can become detrimental to the ecological community in the long-term. Paper V shows that consumer flexibility often led to consumers continuously overexploiting their new prey, in the worst case to the point of system collapse. Thus, the suggested rescue mechanism aggravated the effect of initial species loss, rather than ameliorating it.Overall, the research presented here, underscores the importance of including population dynamics and biotic interactions when studying the effects of perturbation on biodiversity. Many of the results are complex, hard to foresee or even counter-intuitive, arising from the indirect effects of the perturbation being translated through the living web of species interactions.
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| 2. |
- Lü, Bo
(författare)
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Dynamics of the Early Stages in Metal-on-Insulator Thin Film Deposition
- 2014
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Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Thin films consist of nanoscale layers of material that are used in many technological applications to either functionalize a surface or serve as parts in miniaturized devices. The properties of a film are closely related to its microstructure, which in turn can be tuned during film preparation. Thin film growth involves a multitude of atomic-scale processes that cannot always be easily studied experimentally. Therefore, different types of computer simulations have been developed in order to test theoretical models of thin film growth in a highly controlled way. To be able to compare simulation and experimental results, the simulations must be able to model events on experimental time-scales, i.e. several seconds or minutes. This is achievable with the kinetic Monte Carlo method.In this work, kinetic Monte Carlo simulations are used to model the initial growth stages of metal films on insulating, amorphous substrates. This includes the processes of island nucleation, three-dimensional island growth and island coalescence. Both continuous and pulsed vapor fluxes are investigated as deposition sources, and relations between deposition parameters and film morphology are formulated. Specifically, the film thickness at what is known as the “elongation transition” is studied as a function of the temporal profile of the vapor flux, adatom diffusivity and the coalescence rate. Since the elongation transition occurs due to hindrance of coalescence completion, two separate scaling behaviors of the elongation transition film thickness are found: one where coalescence occurs frequently and one where coalescence occurs infrequently. In the latter case, known nucleation behaviors can be used favorably to control the morphology of thin films, as these behaviors are not erased by island coalescence. Experimental results of Ag growth on amorphous SiO2 that confirm the existence of these two “growth regimes” are also presented for both pulsed and continuous deposition by magnetron sputtering. Knowledge of how to avoid coalescence for different deposition conditions allows nucleation for metal-on-insulator material systems to be studied and relevant physical quantities to be determined in a way not previously possible. This work also aids understanding of the growth evolution of polycrystalline films, which in conjunction with advanced deposition techniques allows thin films to be tailored to specific applications.
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