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The Carniolan Honey...
The Carniolan Honeybee from Slovenia-A Complete and Annotated Mitochondrial Genome with Comparisons to Closely Related Apis mellifera Subspecies
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- Moskric, Ajda (författare)
- Agr Inst Slovenia, Anim Prod Dept, Hacquetova Ulica 17, SI-1000 Ljubljana, Slovenia.
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- Marinc, Andraz (författare)
- Agr Inst Slovenia, Anim Prod Dept, Hacquetova Ulica 17, SI-1000 Ljubljana, Slovenia.
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- Ferk, Polonca (författare)
- Univ Ljubljana, Fac Med, Inst Biostat & Med Informat, Ctr ELIXIR SI, Vrazov Trg 2, SI-1000 Ljubljana, Slovenia.
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- Leskosek, Brane (författare)
- Univ Ljubljana, Fac Med, Inst Biostat & Med Informat, Ctr ELIXIR SI, Vrazov Trg 2, SI-1000 Ljubljana, Slovenia.
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- Mosbech, Mai-Britt (författare)
- Uppsala universitet,Institutionen för immunologi, genetik och patologi,Science for Life Laboratory, SciLifeLab,Uppsala genomcenter
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- Bunikis, Ignas (författare)
- Uppsala universitet,Science for Life Laboratory, SciLifeLab,Institutionen för immunologi, genetik och patologi,Uppsala genomcenter
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- Vinnere, Olga (författare)
- Uppsala universitet,Institutionen för immunologi, genetik och patologi,Science for Life Laboratory, SciLifeLab,Uppsala genomcenter
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- Soler, Lucile (författare)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Presern, Janez (författare)
- Agr Inst Slovenia, Anim Prod Dept, Hacquetova Ulica 17, SI-1000 Ljubljana, Slovenia.
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Agr Inst Slovenia, Anim Prod Dept, Hacquetova Ulica 17, SI-1000 Ljubljana, Slovenia Univ Ljubljana, Fac Med, Inst Biostat & Med Informat, Ctr ELIXIR SI, Vrazov Trg 2, SI-1000 Ljubljana, Slovenia. (creator_code:org_t)
- 2022-04-22
- 2022
- Engelska.
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Ingår i: Insects. - : MDPI AG. - 2075-4450. ; 13:5
- Relaterad länk:
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https://doi.org/10.3...
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https://uu.diva-port... (primary) (Raw object)
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https://urn.kb.se/re...
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https://doi.org/10.3...
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Abstract
Ämnesord
Stäng
- The complete mitochondrial genome of the Carniolan honeybee (Apis mellifera carnica) from Slovenia, a homeland of this subspecies, was acquired in two contigs from WGS data and annotated. The newly obtained mitochondrial genome is a circular closed loop of 16,447 bp. It comprises 37 genes (13 protein coding genes, 22 tRNA genes, and 2 rRNA genes) and an AT-rich control region. The order of the tRNA genes resembles the order characteristic of A. mellifera. The mitogenomic sequence of A. m. carnica from Slovenia contains 44 uniquely coded sites in comparison to the closely related subspecies A. m. ligustica and to A. m. carnica from Austria. Furthermore, 24 differences were recognised in comparison between A. m. carnica and A. m. ligustica subspecies. Among them, there are three SNPs that affect translation in the nd2, nd4, and cox2 genes, respectively. The phylogenetic placement of A. m. carnica from Slovenia within C lineage deviates from the expected position and changes the perspective on relationship between C and O lineages. The results of this study represent a valuable addition to the information available in the phylogenomic studies of A. mellifera-a pollinator species of worldwide importance. Such genomic information is essential for this local subspecies' conservation and preservation as well as its breeding and selection.
Ämnesord
- NATURVETENSKAP -- Biologi -- Genetik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Genetics (hsv//eng)
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
Nyckelord
- western honeybee
- Apis mellifera carnica
- mitochondrial genome
- phylogeny
- C lineage
- annotation
- whole genome sequencing
- protection
- conservation
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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