| 1. |
- Brøns, Charlotte, et al.
(författare)
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Deoxyribonucleic Acid Methylation and Gene Expression of PPARGC1A in Human Muscle Is Influenced by High-Fat Overfeeding in a Birth-Weight-Dependent Manner.
- 2010
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Ingår i: The Journal of clinical endocrinology and metabolism. - : The Endocrine Society. - 1945-7197 .- 0021-972X. ; 95, s. 3048-3056
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Tidskriftsartikel (refereegranskat)abstract
- Context: Low birth weight (LBW) and unhealthy diets are risk factors of metabolic disease including type 2 diabetes (T2D). Genetic, nongenetic, and epigenetic data propose a role of the key metabolic regulator peroxisome proliferator-activated receptor gamma, coactivator 1alpha (PPARGC1A) in the development of T2D. Objective: Our objective was to investigate gene expression and DNA methylation of PPARGC1A and coregulated oxidative phosphorylation (OXPHOS) genes in LBW and normal birth weight (NBW) subjects during control and high-fat diets. Design, Subjects, and Main Outcome Measures: Twenty young healthy men with LBW and 26 matched NBW controls were studied after 5 d high-fat overfeeding (+50% calories) and after a control diet in a randomized manner. Hyperinsulinemic-euglycemic clamps were performed and skeletal muscle biopsies excised. DNA methylation and gene expression were measured using bisulfite sequencing and quantitative real-time PCR, respectively. Results: When challenged with high-fat overfeeding, LBW subjects developed peripheral insulin resistance and reduced PPARGC1A and OXPHOS (P < 0.05) gene expression. PPARGC1A methylation was significantly higher in LBW subjects (P = 0.0002) during the control diet. However, PPARGC1A methylation increased in only NBW subjects after overfeeding in a reversible manner. DNA methylation of PPARGC1A did not correlate with mRNA expression. Conclusions: LBW subjects developed peripheral insulin resistance and decreased gene expression of PPARGC1A and OXPHOS genes when challenged with fat overfeeding. The extent to which our finding of a constitutively increased DNA methylation in the PPARGC1A promoter in LBW subjects may contribute needs to be determined. We provide the first experimental support in humans that DNA methylation induced by overfeeding is reversible.
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| 2. |
- Gundale, Michael, et al.
(författare)
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Interactions with soil biota shift from negative to positive when a tree species is moved outside its native range
- 2014
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Ingår i: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 202, s. 415-421
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Tidskriftsartikel (refereegranskat)abstract
- Studies evaluating plant-soil biota interactions in both native and introduced plant ranges are rare, and thus far have lacked robust experimental designs to account for several potential confounding factors. Here, we investigated the effects of soil biota on growth of Pinus contorta, which has been introduced from Canada to Sweden. Using Swedish and Canadian soils, we conducted two glasshouse experiments. The first experiment utilized unsterilized soil from each country, with a full-factorial cross of soil origin, tree provenance, and fertilizer addition. The second experiment utilized gamma-irradiated sterile soil from each country, with a full-factorial cross of soil origin, soil biota inoculation treatments, tree provenance, and fertilizer addition. The first experiment showed higher seedling growth on Swedish soil relative to Canadian soil. The second experiment showed this effect was due to differences in soil biotic communities between the two countries, and occurred independently of all other experimental factors. Our results provide strong evidence that plant interactions with soil biota can shift from negative to positive following introduction to a new region, and are relevant for understanding the success of some exotic forest plantations, and invasive and range-expanding native species.
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| 3. |
- Nilsson, C. L., et al.
(författare)
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Chromosome 19 Annotations with Disease Speciation: A First Report from the Global Research Consortium
- 2013
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 12:1, s. 134-149
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Tidskriftsartikel (refereegranskat)abstract
- A first research development progress report of the Chromosome 19 Consortium with members from Sweden, Norway, Spain, United States, China and India, a part of the Chromosome-centric Human Proteome Project (C-HPP) global initiative, is presented (http://www.c-hpp.org). From the chromosome 19 peptide-targeted library constituting 6159 peptides, a pilot study was conducted using a subset with 125 isotope-labeled peptides. We applied an annotation strategy with triple quadrupole, ESI-Qtrap, and MALDI mass spectrometry platforms, comparing the quality of data within and in between these instrumental set-ups. LC–MS conditions were outlined by multiplex assay developments, followed by MRM assay developments. SRM was applied to biobank samples, quantifying kallikrein 3 (prostate specific antigen) in plasma from prostate cancer patients. The antibody production has been initiated for more than 1200 genes from the entire chromosome 19, and the progress developments are presented. We developed a dedicated transcript microarray to serve as the mRNA identifier by screening cancer cell lines. NAPPA protein arrays were built to align with the transcript data with the Chromosome 19 NAPPA chip, dedicated to 90 proteins, as the first development delivery. We have introduced an IT-infrastructure utilizing a LIMS system that serves as the key interface for the research teams to share and explore data generated within the project. The cross-site data repository will form the basis for sample processing, including biological samples as well as patient samples from national Biobanks.
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| 4. |
- Nilsson, Rickard, et al.
(författare)
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Utredning och provning av kostnadseffektiva metoder för bullerminimering av spårfordon
- 2013
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Ingår i: Transportforum 2013. - Linköping : Statens väg- och transportforskningsinstitut. ; , s. 122-135
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Konferensbidrag (refereegranskat)abstract
- Den här artikeln avser att för ett befintligt spårtrafiksystem översiktligt beskriva olika bullerreducerande åtgärders effekt, deras ekonomiska aspekter samt indirekt inverkan på systemet och dess omgivning. SL (AB Storstockholms Lokaltrafik) arbetar aktivt för att minska tågtrafikens störning till omgivningen, med den långsiktiga strävan att hela SLs spårsystem ska innehålla riktvärden för ny- och ombyggd järnväg enligt infrastrukturpropositionen. Ett viktigt medel för att nå denna ambition är succesivt byte av fordonsparken till nya och tystare fordon, detta kommer dock inte ge tillräcklig bullerreduktion, ytterligare åtgärder kommer att krävas. Beroende på problembilden kan det innebära att en enstaka åtgärd eller flera åtgärder i kombination behöver tas till. För att kartlägga, utvärdera och skapa kunskap om olika åtgärdsalternativ har SL därför arbetat långsiktigt och systematiskt med att utvärdera ett antal olika metoder. En viktig aspekt i sammanhanget är att då SLs spår till stor del går mycket nära bostäder är det önskvärt att hitta effektiva bullerskyddsåtgärder med så liten påverkan som möjligt avseende landskapsbild och barriäreffekt. Med hänsyn till ägardirektivet om ekonomi i balans är det även viktigt att se till total nytta relativt total kostnad vid val av åtgärd.
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| 5. |
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| 6. |
- Bansal, Sheel, et al.
(författare)
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Response of photosynthetic carbon gain to ecosystem retrogression of vascular plants and mosses in the boreal forest
- 2012
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Ingår i: Oecologia. - : Springer Science and Business Media LLC. - 0029-8549 .- 1432-1939. ; 169, s. 661-672
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Tidskriftsartikel (refereegranskat)abstract
- In the long-term absence of rejuvenating disturbances, forest succession frequently proceeds from a maximal biomass phase to a retrogressive phase characterized by reduced nutrient availability [notably nitrogen (N) and phosphorus (P)] and net primary productivity. Few studies have considered how retrogression induces changes in ecophysiological responses associated with photosynthetic carbon (C) gain, and only for trees. We tested the hypothesis that retrogression would negatively impact photosynthetic C gain of four contrasting species, and that this impact would be greater for vascular plants (i.e., trees and shrubs) than for non-vascular plants (i.e., mosses). We used a 5,000-year-old chronosequence of forested islands in Sweden, where retrogression occurs in the long-term absence of lightning-ignited wildfires. Despite fundamental differences in plant form and ecological niche among species, vascular plants and mosses showed similar ecophysiological responses to retrogression. The most common effects of retrogression were reductions in photosynthesis and respiration per unit foliar N, increases in foliar N, delta C-13 and delta N-15, and decreases in specific leaf areas. In contrast, photosynthesis per unit mass or area generally did not change along the chronosequence, but did vary many-fold between vascular plants and mosses. The consistent increases in foliar N without corresponding increases in mass- or area-based photosynthesis suggest that other factor(s), such as P co-limitation, light conditions or water availability, may co-regulate C gain in retrogressive boreal forests. Against our predictions, traits of mosses associated with C and N were generally highly responsive to retrogression, which has implications for how mosses influence ecosystem processes in boreal forests.
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| 7. |
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| 8. |
- Bansal, Sheel, et al.
(författare)
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The interactive effects of surface-burn severity and canopy cover on conifer and broadleaf tree seedling ecophysiology
- 2014
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Ingår i: Canadian Journal of Forest Research. - : Canadian Science Publishing. - 0045-5067 .- 1208-6037. ; 44, s. 1032-1041
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Tidskriftsartikel (refereegranskat)abstract
- Fire has an important role for regeneration of many boreal forest tree species, and this includes both wildfire and prescribed burning following clear-cutting. Depending on the severity, fire can have a variety of effects on above-and below-ground properties that impact tree seedling establishment. Very little is known about the impacts of ground fire severity on post-fire seedling performance, or how the effects of fire severity interact with those of canopy structure. We conducted a full-factorial experiment that manipulated surface-burn severity (no burn; light, medium, or heavy burn; or scarification) and canopy (closed forest or open clear-cut) to reveal their interactive effects on ecophysiological traits of establishing broadleaf and conifer seedlings in a Swedish boreal forest. Medium and heavy surface burns increased seedling growth, photosynthesis, respiration, and foliar N and P concentrations, and these effects were most apparent in open clear-cuts. Growth rates of all species responded similarly to surface-burn treatments, although photosynthesis, foliar P, and specific leaf area were more responsive to burning treatments for broadleaf species than for conifers. Our study demonstrates that the positive impacts of fire on tree seedling physiology are dependent on a minimum severity threshold and are more effective when combined with clear-cutting.
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| 9. |
- Bay, Guillaume, et al.
(författare)
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Boreal feather mosses secrete chemical signals to gain nitrogen
- 2013
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Ingår i: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 200:1, s. 54-60
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Tidskriftsartikel (refereegranskat)abstract
- The mechanistic basis of feather moss-cyanobacteria associations, a main driver of nitrogen (N) input into boreal forests, remains unknown. Here, we studied colonization by Nostoc sp. on two feather mosses that form these associations (Pleurozium schreberi and Hylocomium splendens) and two acrocarpous mosses that do not (Dicranum polysetum and Polytrichum commune). We also determined how N availability and moss reproductive stage affects colonization, and measured N transfer from cyanobacteria to mosses. The ability of mosses to induce differentiation of cyanobacterial hormogonia, and of hormogonia to then colonize mosses and re-establish a functional symbiosis was determined through microcosm experiments, microscopy and acetylene reduction assays. Nitrogen transfer between cyanobacteria and Pleurozium schreberi was monitored by secondary ion mass spectrometry (SIMS). All mosses induced hormogonia differentiation but only feather mosses were subsequently colonized. Colonization on Pleurozium schreberi was enhanced during the moss reproductive phase but impaired by elevated N. Transfer of N from cyanobacteria to their host moss was observed. Our results reveal that feather mosses likely secrete species-specific chemo-attractants when N-limited, which guide cyanobacteria towards them and from which they gain N. We conclude that this signalling is regulated by N demands of mosses, and serves as a control of N input into boreal forests.
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| 10. |
- Bokhorst, Stef Frederik, et al.
(författare)
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Impact of understory mosses and dwarf shrubs on soil micro-arthropods in a boreal forest chronosequence
- 2014
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Ingår i: Plant and Soil. - : Springer Science and Business Media LLC. - 0032-079X .- 1573-5036. ; 379, s. 121-133
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Tidskriftsartikel (refereegranskat)abstract
- Plant species and functional groups are known to drive the community of belowground invertebrates but whether their effects are consistent across environmental gradients is less well understood. We aimed to determine if plant effects on belowground communities are consistent across a successional gradient in boreal forests of northern Sweden.We performed two plant removal experiments across ten stands that form a 364-year post-fire boreal forest chronosequence. Through the removal of plant functional groups (mosses or dwarf shrubs) and of individual species of dwarf shrubs, we aimed to determine if the effects of functional groups and species on the soil micro-arthropod community composition varied across this chronosequence.Removal of mosses had a strong negative impact on the abundance and diversity of Collembola and Acari and this effect was consistent across the chronosequence. Only specific Oribatid families declined following dwarf-shrub species removals, with some of these responses being limited to old forest stands.Our results show that the impacts of plants on micro-arthropods is consistent across sites that vary considerably in their stage of post-fire ecosystem development, despite these stages differing greatly in plant productivity, fertility, humus accumulation and moss development. In addition, mosses are a much stronger driver of the micro-arthropod community than vascular plants.
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