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- Labit, B., et al.
(författare)
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Dependence on plasma shape and plasma fueling for small edge-localized mode regimes in TCV and ASDEX Upgrade
- 2019
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Ingår i: Nuclear Fusion. - : IOP Publishing. - 1741-4326 .- 0029-5515. ; 59:8
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Tidskriftsartikel (refereegranskat)abstract
- © 2019 Institute of Physics Publishing. All rights reserved. Within the EUROfusion MST1 work package, a series of experiments has been conducted on AUG and TCV devices to disentangle the role of plasma fueling and plasma shape for the onset of small ELM regimes. On both devices, small ELM regimes with high confinement are achieved if and only if two conditions are fulfilled at the same time. Firstly, the plasma density at the separatrix must be large enough (ne,sep/nG ∼ 0.3), leading to a pressure profile flattening at the separatrix, which stabilizes type-I ELMs. Secondly, the magnetic configuration has to be close to a double null (DN), leading to a reduction of the magnetic shear in the extreme vicinity of the separatrix. As a consequence, its stabilizing effect on ballooning modes is weakened.
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| 4. |
- Pantazis, N, et al.
(författare)
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Determining the likely place of HIV acquisition for migrants in Europe combining subject-specific information and biomarkers data
- 2019
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Ingår i: Statistical methods in medical research. - : SAGE Publications. - 1477-0334 .- 0962-2802. ; 28:7, s. 1979-1997
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Tidskriftsartikel (refereegranskat)abstract
- In most HIV-positive individuals, infection time is only known to lie between the time an individual started being at risk for HIV and diagnosis time. However, a more accurate estimate of infection time is very important in certain cases. For example, one of the objectives of the Advancing Migrant Access to Health Services in Europe (aMASE) study was to determine if HIV-positive migrants, diagnosed in Europe, were infected pre- or post-migration. We propose a method to derive subject-specific estimates of unknown infection times using information from HIV biomarkers’ measurements, demographic, clinical, and behavioral data. We assume that CD4 cell count (CD4) and HIV-RNA viral load trends after HIV infection follow a bivariate linear mixed model. Using post-diagnosis CD4 and viral load measurements and applying the Bayes’ rule, we derived the posterior distribution of the HIV infection time, whereas the prior distribution was informed by AIDS status at diagnosis and behavioral data. Parameters of the CD4–viral load and time-to-AIDS models were estimated using data from a large study of individuals with known HIV infection times (CASCADE). Simulations showed substantial predictive ability (e.g. 84% of the infections were correctly classified as pre- or post-migration). Application to the aMASE study ( n = 2009) showed that 47% of African migrants and 67% to 72% of migrants from other regions were most likely infected post-migration. Applying a Bayesian method based on bivariate modeling of CD4 and viral load, and subject-specific information, we found that the majority of HIV-positive migrants in aMASE were most likely infected after their migration to Europe.
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| 5. |
- Abudurexiti, A, et al.
(författare)
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Taxonomy of the order Bunyavirales: update 2019
- 2019
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Ingår i: Archives of virology. - : Springer Science and Business Media LLC. - 1432-8798 .- 0304-8608. ; 164:7, s. 1949-1965
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Tidskriftsartikel (refereegranskat)
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| 6. |
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| 7. |
- Stewart, Joshua D., et al.
(författare)
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Research Priorities to Support Effective Manta and Devil Ray Conservation
- 2018
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Ingår i: Frontiers in Marine Science. - : Frontiers Media S.A.. - 2296-7745. ; 5, s. 1-27
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Forskningsöversikt (refereegranskat)abstract
- Manta and devil rays are filter-feeding elasmobranchs that are found circumglobally in tropical and subtropical waters. Although relatively understudied for most of the Twentieth century, public awareness and scientific research on these species has increased dramatically in recent years. Much of this attention has been in response to targeted fisheries, international trade in mobulid products, and a growing concern over the fate of exploited populations. Despite progress in mobulid research, major knowledge gaps still exist, hindering the development of effective management and conservation strategies. We assembled 30 leaders and emerging experts in the fields of mobulid biology, ecology, and conservation to identify pressing knowledge gaps that must be filled to facilitate improved science-based management of these vulnerable species. We highlight focal research topics in the subject areas of taxonomy and diversity, life history, reproduction and nursery areas, population trends, bycatch and fisheries, spatial dynamics and movements, foraging and diving, pollution and contaminants, and sub-lethal impacts. Mobulid rays remain a poorly studied group, and therefore our list of important knowledge gaps is extensive. However, we hope that this identification of high priority knowledge gaps will stimulate and focus future mobulid research.
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| 8. |
- Thorell, Kaisa, 1983, et al.
(författare)
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In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis
- 2017
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Ingår i: Infection and Immunity. - 1098-5522 .- 0019-9567. ; 85:10
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Tidskriftsartikel (refereegranskat)abstract
- Emerging evidence shows that the human microbiota plays a larger role in disease progression and health than previously anticipated. Helicobacter pylori, the causative agent of gastric cancer and duodenal and gastric ulcers, was early associated with gastric disease, but it has also been proposed that the accompanying microbiota in Helicobacter pylori-infected individuals might affect disease progression and gastric cancer development. In this study, the composition of the transcriptionally active microbial community and H. pylori gene expression were determined using metatranscriptomic RNA sequencing of stomach biopsy specimens from individuals with different H. pylori infection statuses and premalignant tissue changes. The results show that H. pylori completely dominates the microbiota not only in infected individuals but also in most individuals classified as H. pylori uninfected using conventional methods. Furthermore, H. pylori abundance is positively correlated with the presence of Campylobacter, Deinococcus, and Sulfurospirillum. Finally, we quantified the expression of a large number of Helicobacter pylori genes and found high expression of genes involved in pH regulation and nickel transport. Our study is the first to dissect the viable microbiota of the human stomach by metatranscriptomic analysis, and it shows that metatranscriptomic analysis of the gastric microbiota is feasible and can provide new insights into how bacteria respond in vivo to variations in the stomach microenvironment and at different stages of disease progression.
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| 10. |
- Agic, Heda, et al.
(författare)
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Life through the 'Varanger ice ages' : microfossil record of late Neoproterozoic glacial-interglacial units from arctic Norway
- 2018
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Ingår i: Geological Society of America <em>Abstracts with Programs</em>. - : Geological Society of America.
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- The late Neoproterozoic strata in Finnmark (Arctic Norway) provide a good sedimentary record of Neoproterozoic glaciations on the Baltica paleocontinent. The lower Vestertana Group exposed on the Digermulen Peninsula contains two glaciogenic units, the Smalfjord and Mortensnes formations. Chemostratigraphic correlation dated the Smalfjord diamictite to the Marinoan glaciation (650-635 Ma), yet its age was also proposed to be older, per correlation to glacial units in central and southern Scandinavia. The diamictites are bracketing shales and siltstones of the interglacial Nyborg Formation. Stratigraphic, paleontological, and sedimentological data are presented from the interglacial-glacial succession, investigated by the Digermulen Early Life Research Group. Palynological analysis yielded well-preserved organic-walled microfossils (OWM) from the Nyborg Fm., and from fine-grained diamictite matrix in the Mortensnes Fm. via a modified extraction method.The interglacial Nyborg Fm. hosts a moderate diversity assemblage of prokaryotic and eukaryotic OWM, as well as acanthomorphic acritarchs such as Ceratosphaeridium, ?Cavaspina, and a novel process-bearing form. Organically preserved, enigmatic multicellular eukaryotic fossils occur in the upper Nyborg Fm. The Mortensens glacial assemblage is less diverse and contains bacterial filaments, leiosphaerids, toroidal forms, and Micrhystridium-type minute acanthomorphs.The presence of Doushantuo-Pertatataka type acritarchs in the Nyborg Fm., and small acanthomorphs in the Mortensnes diamictite corroborate an early Ediacaran age for the interglacial-glacial succession on Digermulen. In addition to the trace fossil and body-fossil record of Ediacara-biota in the overlying Stáhpogieddi Formation, the microfossil biostratigraphy suggests Marinoan and Gaskiers glaciation equivalent ages of the Varanger glaciations in Finnmark. Protistan diversity in the succession declined through and following the glaciation, until late Ediacaran.
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