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VeloxChem : A Python-driven density-functional theory program for spectroscopy simulations in high-performance computing environments

Rinkevicius, Zilvinas (författare)
KTH,Teoretisk kemi och biologi
Li, Xin (författare)
KTH,Parallelldatorcentrum, PDC
Vahtras, Olav (författare)
KTH,SeRC - Swedish e-Science Research Centre
visa fler...
Ahmadzadeh, Karan (författare)
KTH,Teoretisk kemi och biologi
Brand, Manuel (författare)
KTH,Teoretisk kemi och biologi
Ringholm, Magnus (författare)
KTH,Teoretisk kemi och biologi
List, N. H. (författare)
Scheurer, M. (författare)
Scott, M. (författare)
Dreuw, A. (författare)
Norman, Patrick (författare)
KTH,Teoretisk kemi och biologi
visa färre...
 (creator_code:org_t)
2019-12-11
2019
Engelska.
Ingår i: Wiley Interdisciplinary Reviews. Computational Molecular Science. - : Blackwell Publishing Inc.. - 1759-0876 .- 1759-0884.
  • Tidskriftsartikel (refereegranskat)
Abstract Ämnesord
Stäng  
  • An open-source program named VeloxChem has been developed for the calculation of electronic real and complex linear response functions at the levels of Hartree–Fock and Kohn–Sham density functional theories. With an object-oriented program structure written in a Python/C++ layered fashion, VeloxChem enables time-efficient prototyping of novel scientific approaches without sacrificing computational efficiency, so that molecular systems involving up to and beyond 500 second-row atoms (or some 10,000 contracted and in part diffuse Gaussian basis functions) can be routinely addressed. In addition, VeloxChem is equipped with a polarizable embedding scheme for the treatment of the classical electrostatic interactions with an environment that in turn is modeled by atomic site charges and polarizabilities. The underlying hybrid message passing interface (MPI)/open multiprocessing (OpenMP) parallelization scheme makes VeloxChem suitable for execution in high-performance computing cluster environments, showing even slightly beyond linear scaling for the Fock matrix construction with use of up to 16,384 central processing unit (CPU) cores. An efficient—with respect to convergence rate and overall computational cost—multifrequency/gradient complex linear response equation solver enables calculations not only of conventional spectra, such as visible/ultraviolet/X-ray electronic absorption and circular dichroism spectra, but also time-resolved linear response signals as due to ultra-short weak laser pulses. VeloxChem distributed under the GNU Lesser General Public License version 2.1 (LGPLv2.1) license and made available for download from the homepage https://veloxchem.org. This article is categorized under: Software > Quantum Chemistry Electronic Structure Theory > Density Functional Theory Theoretical and Physical Chemistry > Spectroscopy.

Ämnesord

NATURVETENSKAP  -- Kemi -- Teoretisk kemi (hsv//swe)
NATURAL SCIENCES  -- Chemical Sciences -- Theoretical Chemistry (hsv//eng)

Nyckelord

circular dichroism
density functional theory (DFT)
ECD
high-performance computing (HPC)
MPI
OpenMP
response theory
UV/vis
Application programming interfaces (API)
Cluster computing
Computation theory
Computational efficiency
Dichroism
Electronic structure
High level languages
Message passing
Object oriented programming
Open source software
Physical chemistry
Program processors
Quantum chemistry
Circular dichroism spectra
Electronic structure theory
High performance computing
High performance computing (HPC)
High-performance computing clusters
Density functional theory

Publikations- och innehållstyp

ref (ämneskategori)
art (ämneskategori)

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