| 1. |
- Clark, Andrew G., et al.
(författare)
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Evolution of genes and genomes on the Drosophila phylogeny
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 450:7167, s. 203-218
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Tidskriftsartikel (refereegranskat)abstract
- Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
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| 2. |
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| 3. |
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| 4. |
- Alkhomashi, N., et al.
(författare)
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beta(-)-delayed spectroscopy of neutron-rich tantalum nuclei: Shape evolution in neutron-rich tungsten isotopes
- 2009
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Ingår i: Physical Review C (Nuclear Physics). - 0556-2813. ; 80:6
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Tidskriftsartikel (refereegranskat)abstract
- The low-lying structure of W-188,W-190,W-192 has been studied following beta decays of the neutron-rich mother nuclei Ta-188,Ta-190,Ta-192 produced following the projectile fragmentation of a 1-GeV-per-nucleon Pb-208 primary beam on a natural beryllium target at the GSI Fragment Separator. The beta-decay half-lives of Ta-188, Ta-190, and Ta-192 have been measured, with gamma-ray decays of low-lying states in their respective W daughter nuclei, using heavy-ion beta-gamma correlations and a position-sensitive silicon detector setup. The data provide information on the low-lying excited states in W-188, W-190, and W-192, which highlight a change in nuclear shape at W-190 compared with that of lighter W isotopes. This evolution of ground-state structure along the W isotopic chain is discussed as evidence for a possible proton subshell effect for the A similar to 190 region and is consistent with maximization of the gamma-softness of the nuclear potential around N similar to 116.
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| 5. |
- Graslund, S, et al.
(författare)
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Protein production and purification
- 2008
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Ingår i: Nature methods. - : Springer Science and Business Media LLC. - 1548-7105 .- 1548-7091. ; 5:2, s. 135-146
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Tidskriftsartikel (refereegranskat)
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| 6. |
- Abonia, J Pablo, et al.
(författare)
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Alpha-4 integrins and VCAM-1, but not MAdCAM-1, are essential for recruitment of mast cell progenitors to the inflamed lung
- 2006
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Ingår i: Blood. - : American Society of Hematology. - 0006-4971 .- 1528-0020. ; 108:5, s. 1588-1594
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Tidskriftsartikel (refereegranskat)abstract
- Normal mouse lungs lack appreciable numbers of mast cells (MCs) or MC progenitors (MCp's), yet the appearance of mature MCs in the tracheobronchial epithelial surface is a characteristic of allergic, T-cell-dependent pulmonary inflammation. We hypothesized that pulmonary inflammation would recruit MCp's to inflamed lungs and that this recruitment would be regulated by distinct adhesion pathways. Ovalbumin-sensitized and challenged mice had a greater than 28-fold increase in the number of MCp's in the lungs. In mice lacking endothelial vascular cell adhesion molecule 1 (VCAM-1) and in wild-type mice administered blocking monoclonal antibody (mAb) to VCAM-1 but not to mucosal addressin CAM-1 (MadCAM-1), recruitment of MCp's to the inflamed lung was reduced by greater than 75%. Analysis of the integrin receptors for VCAM-1 showed that in beta7 integrin-deficient mice, recruitment was reduced 73% relative to wild-type controls, and in either BALB/c or C57BL/6 mice, mAb blocking of alpha4, beta1, or beta7 integrins inhibited the recruitment of MCp's to the inflamed lung. Thus, VCAM-1 interactions with both alpha4beta1 and alpha4beta7 integrins are essential for the recruitment and expansion of the MCp populations in the lung during antigen-induced pulmonary inflammation. Furthermore, the MCp is currently unique among inflammatory cells in its partial dependence on alpha4beta7 integrins for lung recruitment.
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| 7. |
- Anderlund, Magnus F., et al.
(författare)
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Redox chemistry of a dimanganese(II,III) complex with an unsymmetric ligand : Water binding, deprotonation and accumulative light-induced oxidation
- 2006
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Ingår i: European Journal of Inorganic Chemistry. - : Wiley. - 1434-1948 .- 1099-1948 .- 1099-0682. ; :24, s. 5033-5047
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Tidskriftsartikel (refereegranskat)abstract
- A dinuclear manganese complex {[(Mn2L)-L-II,IIII(mu-OAc)(2)]-ClO4} has been synthesised, where L is the dianion of 2-{[bis-(pyrid-2-ylmethyl)amino]methyl}-6-{[(3,5-di-tert-butyl-2- hydroxybenzyl)(pyrid-2-ylmethyl)amino]methyl)-4-methylphenol, an unsymmetric binucleating ligand with two coordinating phenol groups. The two manganese ions, with a Mn-Mn distance of 3.498 angstrom, are bridged by the two bidentate acetate ligands and the 4-methylphenolate group of the ligand, resulting in a N3O3 and N2O4 donor set of Mn-II and Mn-II, respectively. Electrochemically [Mn2(II,III)L(mu-OAc)(2)](+) is reduced to [(Mn2L)-L-II,II(mu-OAc)(2)] at E-1/2(1)=-0.53 V versus Fc(+/0) and oxidised to [(Mn2L)-L-III,III(mu-OAC)(2)](2+) at E-1/2(2)=0.38 V versus Fc(+/0). All three redox states have been characterised by EPR, IR and UV/Vis spectroscopy. Subsequent oxidation of [(Mn2L)-L-II,III(mu-OAc)(2)](2+) [E-1/2(3)=0.75 V vs. Fc(+/0)] in dry acetonitrile results in an unstable primary product with a lifetime of about 100 ins. At high scan rates quasireversible voltammetric behaviour is found for all three electrode processes, with particularly slow electron transfer for the II,III/II,II [k(o)(1) = 0.002 cms(-1) and III,III/II,III [k(o)(2) = 0.005 cms(-1)] couples, which can be rationalised in terms of major distortions of the Mn-II centres. In aqueous media the bridging acetates are replaced by water-derived ligands. Deprotonation of these stabilises higher valence states, and photo-induced oxidation of the manganese complex results in a (Mn2L)-L-IlI,IV complex with oxo or hydroxo bridging ligands, which is further oxidised to an EPR-silent product. These results demonstrate that a larger number of metal-centred oxidations can be compressed in a narrow potential range if build up of charge is avoided by charge-compensating reactions.
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| 8. |
- Berman, F., et al.
(författare)
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New grid scheduling and rescheduling methods in the GrADS Project
- 2005
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Ingår i: International journal of parallel programming. - : Springer Science and Business Media LLC. - 0885-7458 .- 1573-7640. ; 33:3-Feb, s. 209-229
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Tidskriftsartikel (refereegranskat)abstract
- The goal of the Grid Application Development Software (GrADS) Project is to provide programming tools and an execution environment to ease program development for the Grid. This paper presents recent extensions to the GrADS software framework: a new approach to scheduling workflow computations, applied to a 3-D image reconstruction application; a simple stop/migrate/restart approach to rescheduling Grid applications, applied to a QR factorization benchmark; and a process-swapping approach to rescheduling, applied to an N-body simulation. Experiments validating these methods were carried out on both the GrADS MacroGrid (a small but functional Grid) and the MicroGrid (a controlled emulation of the Grid).
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| 9. |
- Brunner, Sandra, et al.
(författare)
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Overexpression of RPGR leads to male infertility in mice due to defects in flagellar assembly
- 2008
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Ingår i: Biology of Reproduction. - : Oxford University Press (OUP). - 0006-3363 .- 1529-7268. ; 79:4, s. 608-617
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Tidskriftsartikel (refereegranskat)abstract
- Male infertility is one possible consequence of a group of disorders arising from dysfunction of cilia. Ciliopathies include primary ciliary dyskinesia, polycystic kidney disease, Usher syndrome, nephronophthisis, Bardet-Biedl syndrome, Alstrom syndrome, and Meckel-Gruber syndrome as well as some forms of retinal degenerations. Mutations in the retinitis pigmentosa GTPase regulator gene (RPGR) are best known for leading to retinal degeneration but have also been associated with ciliary dysfunctions affecting other tissues. To further study the involvement of RPGR in ciliopathies, transgenic mouse lines overexpressing RPGR were generated. Animals carrying the transgene in varying copy numbers were investigated. We found that infertility due to aberrant spermatozoa correlated with increased copy numbers. In animals with moderately increased gene copies of Rpgr, structural disorganization in the flagellar midpiece, outer dense fibers, and fibrous sheath was apparent. In contrast, in animals with high copy numbers, condensed sperm heads were present, but the flagellum was absent in the vast majority of spermatozoa, although early steps of flagellar biogenesis were observed. This complexity of defects in flagellar assembly suggests a role of RPGR in intraflagellar transport processes.
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| 10. |
- Feste, S. F., et al.
(författare)
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Variability in SOI Schottky barrier MOSFETs
- 2008
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Ingår i: ULIS - Int. Conf. ULtim. Integr. Silicon. - 9781424417308 ; , s. 27-30
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Konferensbidrag (refereegranskat)abstract
- We study the variability of the electrical characteristics of silicon-on-insulator (SOI) SB-MOSFETs. A new method by extracting the variation of the threshold voltage from a large number of devices with different SOI thicknesses enables determining the main sources of variability and distinguishing between them. It is found that the device-to-device variability is mainly due to the inherent variation of the Schottky barrier (SB) height. An additional but smaller contribution stems from fluctuations of the SOI body thickness itself. However, scaling the SOI thickness down our measurements suggest that the SB inhomogeneity increases with decreasing tsi. Furthermore, employing dopant segregation during silicidation to realize low SB heights leads to an increase of the variability, too. Using the measured spread of ΦB we discuss on the base of simulations the influence of this variation on the on-current of SB-MOSFETs. The improved electrostatic gate control in multi-gate devices reduces the sensitivity of carrier injection on an inhomogeneous ΦB and thus suppresses the variability.
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