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- Gremyr, Ida, 1975, et al.
(författare)
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Småskaliga live case för att integrera livslångt lärande och arbetslivsanknytning
- 2023
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Ingår i: Proceedings Chalmers Conference on Teaching and Learning 2023. - Göteborg. - 9789188041548 ; , s. 47-50
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Konferensbidrag (refereegranskat)abstract
- I detta projekt utvecklas en live-case-modell som stödjer utbildningssamverkan och arbetsintegrerat lärande inom ramen för existerande universitetsutbildning och kurser för livslångt lärande (LLL). I denna modell får ingenjörsstudenter och LLL-studenter från vården arbeta tillsammans med ett verkligt problem från LLL-studenternas organisation. Den småskaliga live-case-modellen är resurseffektiv eftersom den är starkt avgränsad i tid (varaktighet: en vecka), dessutom är den unik då den inte bara fokuserar ingenjörsstudenternas, utan även praktikernas (LLL-studenternas), lärande.
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| 2. |
- Smeds, Magdalena, Teknisk licentiat, 1990-, et al.
(författare)
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Helping a “sister” out : Bringing engineering students and healthcare practitioners together through live-cases
- 2023
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Konferensbidrag (refereegranskat)abstract
- Universities search for ways to prepare full-time students for real worklife challenges, but also for ways to offer practitioners life-long learning (LLL) opportunities. This paper presents a live-case model integrating full-time engineering students and LLL students from healthcare in a case model focusing learnings for both groups. The small-scale live-case model offers a resource-efficient learning activity for both traditional courses and LLL courses. The unique characteristics is that the model is strongly delineate in time (duration: one week), and that it focuses not only the students' but also the practitioners’ learning.
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| 3. |
- Smeds, Patrik, et al.
(författare)
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Hydra-genetics, a modular framework for bioinformatics pipeline development
- 2024
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Ingår i: European Journal of Human Genetics. - : Nature Portfolio. - 1018-4813 .- 1476-5438. ; 32:Suppl. 1, s. 675-676
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Background: Processing information from massively parallel sequencing/next-generation sequencing (NGS) data involves several steps that transform millions of rows of input data into more accessible genetic information. The combination of bioinformatics tools that extract all requested information for a particular clinical/research application, how they are tuned and the order in which they are executed constitute a bioinformatics pipeline. Software is often reused in several pipelines and regularly updated. For clinically validated NGS pipelines it may be challenging when individual components of several pipelines needs updating or when tools are replaced with new applications.Methods: The Hydra-genetics framework takes advantage of version controlled Snakemake modules. Pipeline steps are split into modules that can be configured and tested individually. The modules can be combined to build complete bioinformatics analyses, or be added to existing pipelines. All modules are subjected to extensive testing to ensure that new releases do not unexpectedly break existing pipelines or deviate from guidelines and best practices on how to write code.Results: Bioinformaticians from five Genomics Medicine Sweden centers used Hydra-genetics to develop the bioinformatics pipeline for the comprehensive solid tumor panel, GMS560. The pipeline analyses tumor DNA and/or RNA data and generates information on genetic variation including complex biomarkers such as tumor mutation burden and microsatellite instability. It is validated and in clinical use.Conclusions: The Hydra-genetics framework provides a platform for structured bioinformatics pipeline development and facilitates joint development projects involving multiple partners. It makes clinical pipeline development easier, faster and more structured.
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