| 1. |
- Pantazis, N, et al.
(författare)
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Determining the likely place of HIV acquisition for migrants in Europe combining subject-specific information and biomarkers data
- 2019
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Ingår i: Statistical methods in medical research. - : SAGE Publications. - 1477-0334 .- 0962-2802. ; 28:7, s. 1979-1997
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Tidskriftsartikel (refereegranskat)abstract
- In most HIV-positive individuals, infection time is only known to lie between the time an individual started being at risk for HIV and diagnosis time. However, a more accurate estimate of infection time is very important in certain cases. For example, one of the objectives of the Advancing Migrant Access to Health Services in Europe (aMASE) study was to determine if HIV-positive migrants, diagnosed in Europe, were infected pre- or post-migration. We propose a method to derive subject-specific estimates of unknown infection times using information from HIV biomarkers’ measurements, demographic, clinical, and behavioral data. We assume that CD4 cell count (CD4) and HIV-RNA viral load trends after HIV infection follow a bivariate linear mixed model. Using post-diagnosis CD4 and viral load measurements and applying the Bayes’ rule, we derived the posterior distribution of the HIV infection time, whereas the prior distribution was informed by AIDS status at diagnosis and behavioral data. Parameters of the CD4–viral load and time-to-AIDS models were estimated using data from a large study of individuals with known HIV infection times (CASCADE). Simulations showed substantial predictive ability (e.g. 84% of the infections were correctly classified as pre- or post-migration). Application to the aMASE study ( n = 2009) showed that 47% of African migrants and 67% to 72% of migrants from other regions were most likely infected post-migration. Applying a Bayesian method based on bivariate modeling of CD4 and viral load, and subject-specific information, we found that the majority of HIV-positive migrants in aMASE were most likely infected after their migration to Europe.
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| 2. |
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| 3. |
- Fang, Jun, et al.
(författare)
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Functional characterization of a multi-cancer risk locus on chr5p15.33 reveals regulation of TERT by ZNF148
- 2017
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 8
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Tidskriftsartikel (refereegranskat)abstract
- Genome wide association studies (GWAS) have mapped multiple independent cancer susceptibility loci to chr5p15.33. Here, we show that fine-mapping of pancreatic and testicular cancer GWAS within one of these loci (Region 2 in CLPTM1L) focuses the signal to nine highly correlated SNPs. Of these, rs36115365-C associated with increased pancreatic and testicular but decreased lung cancer and melanoma risk, and exhibited preferred protein-binding and enhanced regulatory activity. Transcriptional gene silencing of this regulatory element repressed TERT expression in an allele-specific manner. Proteomic analysis identifies allele-preferred binding of Zinc finger protein 148 (ZNF148) to rs36115365-C, further supported by binding of purified recombinant ZNF148. Knockdown of ZNF148 results in reduced TERT expression, telomerase activity and telomere length. Our results indicate that the association with chr5p15.33-Region 2 may be explained by rs36115365, a variant influencing TERT expression via ZNF148 in a manner consistent with elevated TERT in carriers of the C allele.
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| 4. |
- Wieland, D. C. F., et al.
(författare)
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Complex solutions under shear and pressure : A rheometer setup for X-ray scattering experiments
- 2017
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Ingår i: Journal of Synchrotron Radiation. - : International Union of Crystallography. - 0909-0495 .- 1600-5775. ; 24, s. 646-652
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Tidskriftsartikel (refereegranskat)abstract
- A newly developed high-pressure rheometer for in situ X-ray scattering experiments is described. A commercial rheometer was modified in such a way that X-ray scattering experiments can be performed under different pressures and shear. First experiments were carried out on hyaluronan, a ubiquitous biopolymer that is important for different functions in the body such as articular joint lubrication. The data hint at a decreased electrostatic interaction at higher pressure, presumably due to the increase of the dielectric constant of water by 3% and the decrease of the free volume at 300 bar.
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| 5. |
- Wieland, D. C. Florian, et al.
(författare)
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Studying solutions at high shear rates : A dedicated microfluidics setup
- 2016
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Ingår i: Journal of Synchrotron Radiation. - : International Union of Crystallography. - 0909-0495 .- 1600-5775. ; 23:2, s. 480-486
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Tidskriftsartikel (refereegranskat)abstract
- The development of a dedicated small-angle X-ray scattering setup for the investigation of complex fluids at different controlled shear conditions is reported. The setup utilizes a microfluidics chip with a narrowing channel. As a consequence, a shear gradient is generated within the channel and the effect of shear rate on structure and interactions is mapped spatially. In a first experiment small-angle X-ray scattering is utilized to investigate highly concentrated protein solutions up to a shear rate of 300000 s-1. These data demonstrate that equilibrium clusters of lysozyme are destabilized at high shear rates.
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| 6. |
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| 7. |
- Han, S. -W, et al.
(författare)
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Cooperative multiple access in cognitive radios to enhance QoS for cell edge primary users : asynchronous algorithm and convergence
- 2016
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Ingår i: Telecommunications Systems. - : Springer-Verlag New York. - 1018-4864 .- 1572-9451. ; 61:4, s. 631-643
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Tidskriftsartikel (refereegranskat)abstract
- Cognitive radio (CR) systems have been proposed for efficient usage of spare spectrum licensed to primary systems. This leads to the issue of providing as much spectrum to CR users as possible while not degrading the quality of service (QoS) of primary users of the spectrum. This paper proposes a novel cooperation scheme between primary and CR users to guarantee QoS of primary users up to the cell edge while making the licensed spectrum available for opportunistic access by the CR users. We suggest that the primary users at the cell edge, who have poor QoS, should allow secondary users to access their spectrum, while at the same time, the secondary users would help to enhance the primary users QoS using superposition coding on the primary users transmissions. Thus the proposed method can provide a so called “win-win strategy” by benefiting both primary and CR users. The proposed cooperative access scheme in cognitive radios solves efficiently the sum-rate maximization problem on cognitive Gaussian Multiple Access Channels (GMACs) for power allocation of primary systems that cooperates with CR systems in a distributed fashion. We solved the problem using iterative Jacobian method in a distributed manner. A totally asynchronous distributed power allocation for sum-rate maximization on cognitive GMACs is suggested. Numerical results show that the QoS of primary users at the cell edge is improved by the proposed cooperative access scheme.
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| 8. |
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| 9. |
- Raj, Akanksha, et al.
(författare)
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Lubrication synergy : Mixture of hyaluronan and dipalmitoylphosphatidylcholine (DPPC) vesicles
- 2017
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Ingår i: Journal of Colloid and Interface Science. - : Elsevier BV. - 0021-9797 .- 1095-7103. ; 488, s. 225-233
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Tidskriftsartikel (refereegranskat)abstract
- Phospholipids and hyaluronan have been implied to fulfil important roles in synovial joint lubrication. Since both components are present in synovial fluid, self-assembly structures formed by them should also be present. We demonstrate by small angle X-ray scattering that hyaluronan associates with the outer shell of dipalmitoylphophatidylcholine (DPPC) vesicles in bulk solution. Further, we follow adsorption to silica from mixed hyaluronan/DPPC vesicle solution by Quartz Crystal Microbalance with Dissipation measurements. Atomic Force Microscope imaging visualises the adsorbed layer structure consisting of non-homogeneous phospholipid bilayer with hyaluronan/DPPC aggregates on top. The presence of these aggregates generates a long-range repulsive surface force as two such surfaces are brought together. However, the aggregates are easily deformed, partly rearranged into multilayer structures and partly removed from between the surfaces under high loads. These layers offer very low friction coefficient (<0.01), high load bearing capacity (≈23 MPa), and self-healing ability. Surface bound DPPC/hyaluronan aggregates provide a means for accumulation of lubricating DPPC molecules on sliding surfaces.
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| 10. |
- Tillmann, J., et al.
(författare)
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Evaluating Sex and Age Differences in ADI-R and ADOS Scores in a Large European Multi-site Sample of Individuals with Autism Spectrum Disorder
- 2018
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Ingår i: Journal of Autism and Developmental Disorders. - : Springer Science and Business Media LLC. - 0162-3257 .- 1573-3432. ; 48:7, s. 2490-2505
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Tidskriftsartikel (refereegranskat)abstract
- Research on sex-related differences in Autism Spectrum Disorder (ASD) has been impeded by small samples. We pooled 28 datasets from 18 sites across nine European countries to examine sex differences in the ASD phenotype on the ADI-R (376 females, 1763 males) and ADOS (233 females, 1187 males). On the ADI-R, early childhood restricted and repetitive behaviours were lower in females than males, alongside comparable levels of social interaction and communication difficulties in females and males. Current ADI-R and ADOS scores showed no sex differences for ASD severity. There were lower socio-communicative symptoms in older compared to younger individuals. This large European ASD sample adds to the literature on sex and age variations of ASD symptomatology.
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