| 1. |
- Crous, P. W., et al.
(author)
-
Fusarium : more than a node or a foot-shaped basal cell
- 2021
-
In: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
-
Journal article (peer-reviewed)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
|
|
| 2. |
|
|
| 3. |
- Svensson, Teresia, 1975-, et al.
(author)
-
Chlorination of soil organic matter : The role of humus type and land use
- 2022
-
In: Science of the Total Environment. - : Elsevier. - 0048-9697 .- 1879-1026. ; 806p2
-
Journal article (peer-reviewed)abstract
- The levels of natural organic chlorine (Clorg) typically exceed levels of chloride in most soils and is therefore clearly of high importance for continental chlorine cycling. The high spatial variability raises questions on soil organic matter (SOM) chlorination rates among topsoils with different types of organic matter. We measured Clorg formation rates along depth profiles in six French temperate soils with similar Cl deposition using 36Cl tracer experiments. Three forest sites with different humus types and soils from grassland and arable land were studied. The highest specific chlorination rates (fraction of chlorine pool transformed to Clorg per time unit) among the forest soils were found in the humus layers. Comparing the forest sites, specific chlorination was highest in mull-type humus, characterized by high microbial activity and fast degradation of the organic matter. Considering non-humus soil layers, grassland and forest soils had similar specific chlorination rates in the uppermost layer (0–10 cm below humus layer). Below this depth the specific chlorination rate decreased slightly in forests, and drastically in the grassland soil. The agricultural soil exhibited the lowest specific chlorination rates, similar along the depth profile. Across all sites, specific chlorination rates were correlated with soil moisture and in combination with the patterns on organic matter types, the results suggest an extensive Cl cycling where humus types and soil moisture provided best conditions for microbial activity. Clorg accumulation and theoretical residence times were not clearly linked to chlorination rates. This indicates intensive Cl cycling between organic and inorganic forms in forest humus layers, regulated by humic matter reactivity and soil moisture, while long-term Clorg accumulation seems more linked with overall deep soil organic carbon stabilization. Thus, humus types and factors affecting soil carbon storage, including vegetation land use, could be used as indicators of potential Clorg formation and accumulation in soils.
|
|
| 4. |
- Ernfors, Maria
(author)
-
Challenges of accounting nitrous oxide emissions from agricultural crop residues
- 2023
-
In: Global Change Biology. - 1354-1013 .- 1365-2486. ; 29, s. 6846-6855
-
Journal article (peer-reviewed)abstract
- Crop residues are important inputs of carbon (C) and nitrogen (N) to soils and thus directly and indirectly affect nitrous oxide (N2O) emissions. As the current inventory methodology considers N inputs by crop residues as the sole determining factor for N2O emissions, it fails to consider other underlying factors and processes. There is compelling evidence that emissions vary greatly between residues with different biochemical and physical characteristics, with the concentrations of mineralizable N and decomposable C in the residue biomass both enhancing the soil N2O production potential. High concentrations of these components are associated with immature residues (e.g., cover crops, grass, legumes, and vegetables) as opposed to mature residues (e.g., straw). A more accurate estimation of the short-term (months) effects of the crop residues on N2O could involve distinguishing mature and immature crop residues with distinctly different emission factors. The medium-term (years) and long-term (decades) effects relate to the effects of residue management on soil N fertility and soil physical and chemical properties, considering that these are affected by local climatic and soil conditions as well as land use and management. More targeted mitigation efforts for N2O emissions, after addition of crop residues to the soil, are urgently needed and require an improved methodology for emission accounting. This work needs to be underpinned by research to (1) develop and validate N2O emission factors for mature and immature crop residues, (2) assess emissions from belowground residues of terminated crops, (3) improve activity data on management of different residue types, in particular immature residues, and (4) evaluate long-term effects of residue addition on N2O emissions.
|
|
| 5. |
- Nadeau, Elisabet, et al.
(author)
-
Effects of sulphur fertilization in organically cultivated faba bean
- 2020
-
In: Agricultural and Food Science. - : Agricultural and Food Science. - 1459-6067 .- 1795-1895. ; 29, s. 471–481-
-
Journal article (peer-reviewed)abstract
- Optimal seed yield and quality requires that the sulphur (S) demand of faba bean (Vicia faba L.) is ensured. The ef-fect of S fertilization on organic cultivated faba bean was investigated under field conditions during two growing seasons (2017–2018), in Sweden. Kieserite (MgSO4) and gypsum (CaSO4) were applied at a rate of 20 and 40 kg ha-1to study the effect on faba bean growth, yield, crude protein (CP) content and amino acid (AA) composition. Gyp-sum and kieserite significantly increased S concentration of faba bean dry matter (DM) in 2017. The S concentra-tion ranged from 0.20% to 0.23% of DM compared to 0.18% in the untreated control. In 2018, kieserite application at 40 kg ha-1 significantly increased S concentration to 0.15% compared to 0.12% in the untreated control. The faba bean plants did, however, not respond neither with increased growth nor increased seed yield. The seed quality in terms of CP and S-containing AA, was not affected by S fertilization, however, significant differences were observed between the experimental sites.
|
|
| 6. |
|
|
| 7. |
- Svensson, Teresia, 1975-, et al.
(author)
-
Chlorine cycling and the fate of Cl in terrestrial environments
- 2021
-
In: Environmental Science and Pollution Research. - : Springer. - 0944-1344 .- 1614-7499. ; 28:7, s. 7691-7709
-
Journal article (peer-reviewed)abstract
- Chlorine (Cl) in the terrestrial environment is of interest from multiple perspectives, including the use of chloride as a tracer forwater flow and contaminant transport, organochlorine pollutants, Cl cycling, radioactive waste (radioecology; 36Cl is of largeconcern) and plant science (Cl as essential element for living plants).During the past decades, there has been a rapid developmenttowards improved understanding of the terrestrial Cl cycle. There is a ubiquitous and extensive natural chlorination of organicmatter in terrestrial ecosystems where naturally formed chlorinated organic compounds (Clorg) in soil frequently exceed theabundance of chloride. Chloride dominates import and export from terrestrial ecosystems while soil Clorg and biomass Cl candominate the standing stock Cl. This has important implications for Cl transport, as chloride will enter the Cl pools resulting inprolonged residence times. Clearly, these pools must be considered separately in future monitoring programs addressing Clcycling. Moreover, there are indications that (1) large amounts of Cl can accumulate in biomass, in some cases representing themain Cl pool; (2) emissions of volatile organic chlorines could be a significant export pathway of Cl and (3) that there is aproduction of Clorg in tissues of, e.g. plants and animals and that Cl can accumulate as, e.g. chlorinated fatty acids in organisms.Yet, data focusing on ecosystem perspectives and combined spatiotemporal variability regarding various Cl pools are still scarce,and the processes and ecological roles of the extensive biological Cl cycling are still poorly understood.
|
|
| 8. |
- Barrios Latorre, Sergio Alejandro, et al.
(author)
-
Exploring the benefits of intermediate crops : Is it possible to offset soil organic carbon losses caused by crop residue removal?
- 2024
-
In: Agricultural Systems. - 0308-521X .- 1873-2267. ; 215
-
Journal article (peer-reviewed)abstract
- CONTEXT: Agriculture plays a central role as a feedstock provider for the bioeconomy. However, utilization competing with food production and associated land use change have previously been a matter of debate. Nonetheless, strengthening the productivity of agroecosystems through sustainable intensification can prevent the depletion of natural resources, enhance food security, and facilitate adaptation to and mitigation of climate change. OBJECTIVE: This study explores the effects of combining crop residue removal for use as biomass feedstock with the establishment of intermediate crops to compensate for organic carbon depletion in arable land in Sweden. METHODS: The analysis relied on Swedish national agricultural statistics at the highest available spatial resolution (yield survey district). Crop residue calculations factored in crop:residue ratios, and harvestable and recoverable potentials. A model was devised to estimate land availability for cultivating intermediate crops based on generalized crop rotation sequences, and a spatial interpolation was employed to determine oilseed radish yields as a model intermediate crop. Estimates of long-term soil carbon inputs hinged on biomass carbon content and humification coefficients dependent on soil clay content. RESULTS AND CONCLUSION: The total annual residual biomass availability in the country stands at approximately 2139 kt per year. The potential harvestable biomass production from intermediate crops was estimated at 383 kt per year. However, spatial differences were evident in total biomass production and effects on soil organic carbon inputs. For the majority of districts, the inclusion of intermediate crops could offset the negative effect of a complete removal of crop residues on soil organic carbon inputs. In other cases, establishing intermediate crops could not compensate for these negative effects, but some differences were observed when comparing the harvesting and the incorporation of the intermediate crops' biomass. Spatial disparities originated from variations in soil texture, intermediate crop yield, and rotation sequences. SIGNIFICANCE: This research is an attempt to address the challenge of maintaining and increasing the soil carbon stocks under the context of a growing biomass demand in a developing biobased economy. It highlights the divergent effects of combining crop residue removal with the inclusion of intermediate crops under distinct agroecological conditions in the Northern European context. By giving estimates on biomass availability and effects on soil organic carbon inputs, we provide information that can support decision making for bioeconomy planning and sustainable resource utilization. This also has long-term implications for preservation of soil fertility, agricultural productivity and climate change mitigation.
|
|
| 9. |
- Englund, Oskar, et al.
(author)
-
Beneficial land use change: Strategic expansion of new biomass plantations can reduce environmental impacts from EU agriculture
- 2020
-
In: Global Environmental Change. - : Elsevier BV. - 0959-3780 .- 1872-9495. ; 60
-
Journal article (peer-reviewed)abstract
- Society faces the double challenge of increasing biomass production to meet the future demands for food, materials and bioenergy, while addressing negative impacts of current (and future) land use. In the discourse, land use change (LUC) has often been considered as negative, referring to impacts of deforestation and expansion of biomass plantations. However, strategic establishment of suitable perennial production systems in agricultural landscapes can mitigate environmental impacts of current crop production, while providing biomass for the bioeconomy. Here, we explore the potential for such “beneficial LUC” in EU28. First, we map and quantify the degree of accumulated soil organic carbon losses, soil loss by wind and water erosion, nitrogen emissions to water, and recurring floods, in ∼81.000 individual landscapes in EU28. We then estimate the effectiveness in mitigating these impacts through establishment of perennial plants, in each landscape. The results indicate that there is a substantial potential for effective impact mitigation. Depending on criteria selection, 10–46% of the land used for annual crop production in EU28 is located in landscapes that could be considered priority areas for beneficial LUC. These areas are scattered all over Europe, but there are notable “hot-spots” where priority areas are concentrated, e.g., large parts of Denmark, western UK, The Po valley in Italy, and the Danube basin. While some policy developments support beneficial LUC, implementation could benefit from attempts to realize synergies between different Sustainable Development Goals, e.g., “Zero hunger”, “Clean water and sanitation”, “Affordable and Clean Energy”, “Climate Action”, and “Life on Land”.
|
|
| 10. |
- Wolters, S., et al.
(author)
-
Upscaling proximal sensor N-uptake predictions in winter wheat (Triticum aestivum L.) with Sentinel-2 satellite data for use in a decision support system
- 2021
-
In: Precision Agriculture. - : Springer Science and Business Media LLC. - 1385-2256 .- 1573-1618. ; 22, s. 1263-1283
-
Journal article (peer-reviewed)abstract
- Total nitrogen (N) content in aboveground biomass (N-uptake) in winter wheat (Triticum aestivum L.) as measured in a national monitoring programme was scaled up to full spatial coverage using Sentinel-2 satellite data and implemented in a decision support system (DSS) for precision agriculture. Weekly field measurements of N-uptake had been carried out using a proximal canopy reflectance sensor (handheld Yara N-Sensor) during 2017 and 2018. Sentinel-2 satellite data from two processing levels (top-of-atmosphere reflectance, L1C, and bottom-of-atmosphere reflectance, L2A) were extracted and related to the proximal sensor data (n = 251). The utility of five vegetation indices for estimation of N-uptake was compared. A linear model based on the red-edge chlorophyll index (CI) provided the best N-uptake prediction (L1C data: r2 = 0.74, mean absolute error; MAE = 14kgha−1) when models were applied on independent sites and dates. Use of L2A data, rather than L1C, did not improve the prediction models. The CI-based prediction model was applied on all fields in an area with intensive winter wheat production. Statistics on N-uptake at the end of the stem elongation growth stage were calculated for 4169 winter wheat fields > 5ha. Within-field variation in predicted N-uptake was > 30kgNha−1 in 62% of these fields. Predicted N-uptake was compared against N-uptake maps derived from tractor-borne Yara N-Sensor measurements in 13 fields (1.7–30ha in size). The model based on satellite data generated similar information as the tractor-borne sensing data (r2 = 0.81; MAE = 7kgha−1), and can therefore be valuable in a DSS for variable-rate N application. © 2021, The Author(s).
|
|
